View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5214_high_3 (Length: 352)
Name: NF5214_high_3
Description: NF5214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5214_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 106 - 337
Target Start/End: Complemental strand, 32883798 - 32883564
Alignment:
| Q |
106 |
gtgttgttgaaagttgaaacccaacaacaatctatcaaagtcagatatgtcacatggatgccattctcttcttttctcatttgatagccaaccacaccac |
205 |
Q |
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| T |
32883798 |
gtgttgttgaaagttgaaacccaacaacaatctatcaaagtcagatatgtcacatggataccattctcttcctttctcatttgatagccaaccacaccac |
32883699 |
T |
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| Q |
206 |
atggtgggtatcaaactatcaattattatatacatttgtttcctacctttctcataatttgtgccgtaacattcgtttgatttttgactatgtggaccaa |
305 |
Q |
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| T |
32883698 |
atggtgggtatcaaactatcaattattatatacatttgtttcctacctttctcataatttgtgccgtaacattcgtttgatttttgactatgtggaccaa |
32883599 |
T |
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| Q |
306 |
ata---taatcttcttttcattctcaaatttatat |
337 |
Q |
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| T |
32883598 |
atataataatcttcttctcattctcaaatttatat |
32883564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 289
Target Start/End: Complemental strand, 16386581 - 16386448
Alignment:
| Q |
153 |
tgtcacatggatgccattctcttcttttctcatttgatagccaaccacaccacatg--gtgggtatcaaactatcaattattatatacatttgtttccta |
250 |
Q |
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| T |
16386581 |
tgtcacattgataacattctcttccttt-tcctttgatagccagccacaccacatggtgtggttatcaaactgtcaattattat----atttgttcccaa |
16386487 |
T |
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| Q |
251 |
cctttctcataatttgtgccgtaacattcgtttgatttt |
289 |
Q |
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| T |
16386486 |
cctttctaataatttgtaccacaacgttcgtctgatttt |
16386448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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