View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5214_low_6 (Length: 237)
Name: NF5214_low_6
Description: NF5214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5214_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 118; Significance: 2e-60; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 11 - 211
Target Start/End: Original strand, 4860747 - 4860943
Alignment:
| Q |
11 |
cataggagcagcaaggaataacactaataaggataagaaaaaggatttagccattttaagaagtgatattattattagtgttgtgttcgtgcataataca |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
4860747 |
cataagagcagcaaggaataacactaataaggataagaaaaaggatttagccattttaagaagtgatataattattagtgttg-----gtgcataataca |
4860841 |
T |
|
| Q |
111 |
tagagagtt-aactggttttatactagtttgagactcaatgtgagtctatggtcattcaagctcaaaattttatatgaattgaatcattcaacaatgtta |
209 |
Q |
| |
|
||| ||||| ||||||||||||||||||| |||||||||||||||||||| |||| |||| | |||||| | | ||||||||| |||||||||||||| |
|
|
| T |
4860842 |
tagggagttaaactggttttatactagttagagactcaatgtgagtctatcgtcaatcaaagttaaaattgtgcacgaattgaattattcaacaatgtta |
4860941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 11 - 211
Target Start/End: Original strand, 4880754 - 4880950
Alignment:
| Q |
11 |
cataggagcagcaaggaataacactaataaggataagaaaaaggatttagccattttaagaagtgatattattattagtgttgtgttcgtgcataataca |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
4880754 |
cataagagcagcaaggaataacactaataaggataagaaaaaggatttagccattttaagaagtgatataattattagtgttg-----gtgcataataca |
4880848 |
T |
|
| Q |
111 |
tagagagtt-aactggttttatactagtttgagactcaatgtgagtctatggtcattcaagctcaaaattttatatgaattgaatcattcaacaatgtta |
209 |
Q |
| |
|
||| ||||| ||||||||||||||||||| |||||||||||||||||||| |||| |||| | |||||| | | ||||||||| |||||||||||||| |
|
|
| T |
4880849 |
tagggagttaaactggttttatactagttagagactcaatgtgagtctatcgtcaatcaaagttaaaattgtgcacgaattgaattattcaacaatgtta |
4880948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 9 - 164
Target Start/End: Original strand, 4826400 - 4826550
Alignment:
| Q |
9 |
agcataggagcagcaaggaataacactaataaggataagaaaaaggatttagccattttaagaagtgatattattattagtgttgtgttcgtgcataata |
108 |
Q |
| |
|
|||||| ||||||||||||||| ||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4826400 |
agcataagagcagcaaggaataccactagcaaggataagaaaaaggaattagccactttaagaagtgatattattattagtgttg-----gtgcataata |
4826494 |
T |
|
| Q |
109 |
catagagagttaactggttttatactagtttgagactcaatgtgagtctatggtca |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
4826495 |
catagagagttaactggttttatactagttagagactcaatgtgagtttatggtca |
4826550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 11 - 164
Target Start/End: Original strand, 4841830 - 4841977
Alignment:
| Q |
11 |
cataggagcagcaaggaataacactaataaggataagaaaaaggatttagccattttaagaagtgatattattattagtgttgtgttcgtgcataataca |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
4841830 |
cataagagcagcaaggaataacactaataaggataagaaaaaggatttagccattttaagaagtgatattattatt------gtgttggtgcataataca |
4841923 |
T |
|
| Q |
111 |
tagagagttaactggttttatactagtttgagactcaatgtgagtctatggtca |
164 |
Q |
| |
|
|| || |||||||||||||||||| || |||||||||||||||| |||||||| |
|
|
| T |
4841924 |
tatggaattaactggttttatactaattagagactcaatgtgagtttatggtca |
4841977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 4871536 - 4871677
Alignment:
| Q |
17 |
agcagcaaggaataacactaataaggataagaaaaaggatttagccattttaagaagtgatattattattagtgttgtgttcgtgcataatacatagaga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||| || |
|
|
| T |
4871536 |
agcagcaaggaataacactaataaggataagaaaaaggaattagccattttaagaagtgatattattatt------gtgttggtgcataatacatatgga |
4871629 |
T |
|
| Q |
117 |
gttaactggttttatactagtttgagactcaatgtgagtctatggtca |
164 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
4871630 |
gttaactggctttatactagttagagactcaatgtgagtttatggtca |
4871677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 11 - 169
Target Start/End: Original strand, 4835144 - 4835297
Alignment:
| Q |
11 |
cataggagcagcaaggaataacactaataaggataagaaaaaggatttagccattttaagaagtgatattattattagtgttgtgttcgtgcataataca |
110 |
Q |
| |
|
|||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4835144 |
cataagagcagcaaggaataccactagcaaggataagaaaaaggatttagccattttaagaagtgatattattattagtgttg-----gtgcataataca |
4835238 |
T |
|
| Q |
111 |
tagagagttaactggttttatactagtttgagactcaatgtgagtctatggtcattcaa |
169 |
Q |
| |
|
|| ||||||||||||||||||||| || ||||||||| |||||| |||||||| |||| |
|
|
| T |
4835239 |
tatggagttaactggttttatactaattagagactcaaagtgagtttatggtcaatcaa |
4835297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 4856455 - 4856597
Alignment:
| Q |
17 |
agcagcaaggaataacactaataaggataagaaaaaggatttagccattttaagaagtgatattattattagtgttgtgttcgtgcataatacatagaga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||| |||||||||||||| || |
|
|
| T |
4856455 |
agcagcaaggaataacactaataaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttg-----gtgcataatacatatgga |
4856549 |
T |
|
| Q |
117 |
gttaactggttttatactagtttgagactcaatgtgagtctatggtca |
164 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
4856550 |
gtatactggttttatactagttagagactcaatgtgagtttatggtca |
4856597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 4878190 - 4878332
Alignment:
| Q |
17 |
agcagcaaggaataacactaataaggataagaaaaaggatttagccattttaagaagtgatattattattagtgttgtgttcgtgcataatacatagaga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||| |||||||||||||| || |
|
|
| T |
4878190 |
agcagcaaggaataacactaataaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttg-----gtgcataatacatatgga |
4878284 |
T |
|
| Q |
117 |
gttaactggttttatactagtttgagactcaatgtgagtctatggtca |
164 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
4878285 |
gtatactggttttatactagttagagactcaatgtgagtttatggtca |
4878332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 163
Target Start/End: Original strand, 4852484 - 4852625
Alignment:
| Q |
17 |
agcagcaaggaataacactaataaggataagaaaaaggatttagccattttaagaagtgatattattattagtgttgtgttcgtgcataatacatagaga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||| |||||||||||||| || |
|
|
| T |
4852484 |
agcagcaaggaataacactaataaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttg-----gtgcataatacatatgga |
4852578 |
T |
|
| Q |
117 |
gttaactggttttatactagtttgagactcaatgtgagtctatggtc |
163 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
4852579 |
gtatactggttttatactagttagagactcaatgtgagtttatggtc |
4852625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 4845777 - 4845907
Alignment:
| Q |
17 |
agcagcaaggaataacactaataaggataagaaaaaggatttagccattttaagaagtgatattattattagtgttgtgttcgtgcataatacatagaga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||| | |
|
|
| T |
4845777 |
agcagcaaggaataacactaataaggataagaaaaaggaattagccattttaagaagtgatattattatt------gtgttggtgcataatacataggta |
4845870 |
T |
|
| Q |
117 |
gttaactggttttatactagtttgagactcaatgtga |
153 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
4845871 |
gttaactggctttatactagttagagactcaatgtga |
4845907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 21703890 - 21703687
Alignment:
| Q |
9 |
agcataggagcagcaaggaataacactaataaggataagaaaaaggatttagccattttaagaagtgatattattattagtgttgtgttcgtgcataata |
108 |
Q |
| |
|
|||||| ||||||| |||||| ||||| |||||| |||||||| || ||||||||||||||||||||||||| ||||||||||| |||||||| | |
|
|
| T |
21703890 |
agcataagagcagcgtggaataccactagtaaggacaagaaaaaagaattagccattttaagaagtgatattaatattagtgttg-----gtgcataaga |
21703796 |
T |
|
| Q |
109 |
catagagagttaactggttttatactagtttgagactcaatgtgagt----ctatggtcattcaagctcaaaattttatatgaattgaatcattcaacaa |
204 |
Q |
| |
|
||||| ||||||| ||||||||||||||| ||||||||||| |||| |||||||| |||| ||| ||||||| |||||||| ||||||||| |
|
|
| T |
21703795 |
cataggaagttaaccggttttatactagttagagactcaatgggagtgtgcgtatggtcaatcaaactccaaattttgtatgaatt-----attcaacaa |
21703701 |
T |
|
| Q |
205 |
tgttacacacatag |
218 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
21703700 |
tgttacactcatag |
21703687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University