View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5214_low_7 (Length: 227)
Name: NF5214_low_7
Description: NF5214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5214_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 703060 - 702841
Alignment:
| Q |
7 |
cttgtgcatttgcctttgatcccagccctttacaggacttttgtgtggatatcaatgacaccaggaatggtggtatgtatacttttttaacacttcttta |
106 |
Q |
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| T |
703060 |
cttgtgcctttgcctttgatcccagccctttacaggacttttgtgtggctatcaatgacaccaagaatggtggtatgtatacttttttaacacttcttta |
702961 |
T |
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| Q |
107 |
tttatttttactcgtttggttgaatctgttgaaccaattaaactatgatacaaaagtttcacgggctcgatctcatgtttgacaacaatgatatatacat |
206 |
Q |
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| T |
702960 |
tttatttttactcgtttggttgaatctgttgaaccaattaaactatgatacaaaagtttcacgggttcgatctcatgtttgacaacattgatatatacat |
702861 |
T |
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| Q |
207 |
atataagtacaacatattat |
226 |
Q |
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||||||| | |||||||||| |
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| T |
702860 |
atataagcagaacatattat |
702841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 712378 - 712598
Alignment:
| Q |
7 |
cttgtgcatttgcctttgatcccagccctttacaggacttttgtgtggatatcaatgacaccaggaatggtggtatgtatacttttttaacacttcttta |
106 |
Q |
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| T |
712378 |
cttgtgcctttgcctttgatcccagccctttacaggacttttgtgtggctatcaatgacaccaagaatggtggtatgtatacttttttaacacttcttta |
712477 |
T |
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| Q |
107 |
tttatttttactcgtttggttgaatctgttgaaccaattaaactatgatacaaaagtttcacgggctcgatctcatgtttgacaacaatgatatatacat |
206 |
Q |
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| T |
712478 |
tttatttttactcgtttggttgaatctgttgaaccaattaaactatgatacaaaagtttcacgggtttgatctcatgtatgacaactttgatatatacat |
712577 |
T |
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| Q |
207 |
atataagtacaacatattatt |
227 |
Q |
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| T |
712578 |
atataagtagaacatattatt |
712598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 718351 - 718264
Alignment:
| Q |
9 |
tgtgcatttgcctttgatcccagccctttacaggacttttgtgtggatatcaatgacaccaggaatggtggtatgtatacttttttaa |
96 |
Q |
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| T |
718351 |
tgtgcctttgcctttgatcccagccctctacaagacttttgtgtggctatcaatgacaccaagaatggtggtatgtatgctcttttaa |
718264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 7 - 209
Target Start/End: Complemental strand, 711320 - 711117
Alignment:
| Q |
7 |
cttgtgcatttgcctttgatcccagccctttacaggacttttgtgtggatatcaatgacaccaggaatggtggtatgtatacttttttaacac----ttc |
102 |
Q |
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| T |
711320 |
cttgtgcctttgcatttgatcctagccctctacaagacttttgtgtggctatcaatgacaccaaaacgggtggtatgtatact-ttttaatactttttta |
711222 |
T |
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| Q |
103 |
tttatttatttttactcgtttggttgaatctgttgaaccaattaaactatgatacaaaagtttcacgggctcgatctcatgtttgacaacaatgatatat |
202 |
Q |
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| T |
711221 |
tttatttattttgactcggttggtttaacctgataaaccgattgaactatgatacaataacttcacggg--tgatctcatgtctaacaacattcatatat |
711124 |
T |
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| Q |
203 |
acatata |
209 |
Q |
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|||||| |
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| T |
711123 |
ccatata |
711117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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