View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5215-Insertion-2 (Length: 943)

Name: NF5215-Insertion-2
Description: NF5215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5215-Insertion-2
NF5215-Insertion-2
[»] chr4 (19 HSPs)
chr4 (7-943)||(49106503-49107439)
chr4 (701-943)||(49108607-49108848)
chr4 (717-923)||(50077192-50077397)
chr4 (776-923)||(11652385-11652532)
chr4 (404-555)||(50077860-50078011)
chr4 (776-923)||(3461135-3461282)
chr4 (328-506)||(50112050-50112228)
chr4 (810-921)||(26998735-26998846)
chr4 (694-909)||(49533638-49533846)
chr4 (810-915)||(26984668-26984773)
chr4 (810-921)||(48205832-48205943)
chr4 (837-934)||(21503706-21503802)
chr4 (811-914)||(41013548-41013651)
chr4 (845-918)||(35806165-35806238)
chr4 (7-55)||(50112003-50112051)
chr4 (836-915)||(51578274-51578352)
chr4 (873-916)||(54677590-54677633)
chr4 (816-916)||(26982549-26982646)
chr4 (816-869)||(6431957-6432010)
[»] chr6 (8 HSPs)
chr6 (404-731)||(10796110-10796421)
chr6 (717-923)||(10795883-10796088)
chr6 (717-923)||(10791645-10791850)
chr6 (811-921)||(8875691-8875803)
chr6 (809-923)||(30521242-30521356)
chr6 (852-943)||(11333273-11333363)
chr6 (816-915)||(21216032-21216131)
chr6 (862-919)||(13136607-13136664)
[»] chr1 (21 HSPs)
chr1 (700-923)||(38175523-38175746)
chr1 (775-923)||(14669702-14669850)
chr1 (775-943)||(14674447-14674614)
chr1 (775-943)||(14679825-14679992)
chr1 (775-923)||(14706054-14706202)
chr1 (801-923)||(14654333-14654455)
chr1 (801-923)||(14664124-14664246)
chr1 (801-923)||(14708570-14708692)
chr1 (802-943)||(14681592-14681732)
chr1 (802-923)||(14683743-14683864)
chr1 (801-923)||(14716283-14716405)
chr1 (809-943)||(14652525-14652658)
chr1 (809-943)||(14662316-14662449)
chr1 (777-923)||(28366191-28366338)
chr1 (801-923)||(33988062-33988184)
chr1 (802-904)||(14676625-14676727)
chr1 (806-915)||(14667112-14667221)
chr1 (812-927)||(11872470-11872585)
chr1 (815-894)||(37422175-37422254)
chr1 (805-881)||(28698549-28698625)
chr1 (857-918)||(7448425-7448486)
[»] chr5 (7 HSPs)
chr5 (715-923)||(7524875-7525082)
chr5 (801-932)||(1716436-1716567)
chr5 (776-923)||(3643607-3643754)
chr5 (813-921)||(4103249-4103357)
chr5 (811-918)||(16037861-16037966)
chr5 (842-922)||(5350672-5350752)
chr5 (816-880)||(19261152-19261216)
[»] chr8 (14 HSPs)
chr8 (709-923)||(40054212-40054426)
chr8 (776-923)||(41841145-41841292)
chr8 (776-934)||(44878950-44879107)
chr8 (776-934)||(44880814-44880971)
chr8 (806-943)||(10944373-10944509)
chr8 (809-908)||(37682057-37682156)
chr8 (811-923)||(37679757-37679869)
chr8 (801-909)||(42555090-42555198)
chr8 (826-934)||(44582870-44582977)
chr8 (776-882)||(42220880-42220985)
chr8 (801-883)||(42092013-42092094)
chr8 (802-852)||(42872514-42872564)
chr8 (869-941)||(42554638-42554709)
chr8 (862-915)||(44583110-44583162)
[»] chr2 (25 HSPs)
chr2 (709-923)||(43849952-43850163)
chr2 (775-924)||(30731974-30732123)
chr2 (808-923)||(2841010-2841125)
chr2 (803-923)||(32918074-32918194)
chr2 (806-943)||(30733985-30734121)
chr2 (801-923)||(8973304-8973427)
chr2 (801-919)||(9026778-9026897)
chr2 (806-923)||(9008018-9008136)
chr2 (801-921)||(9020839-9020960)
chr2 (801-882)||(9032045-9032126)
chr2 (811-923)||(19232393-19232504)
chr2 (801-923)||(9030390-9030512)
chr2 (801-890)||(9023439-9023528)
chr2 (801-876)||(8979314-8979389)
chr2 (816-916)||(10763878-10763978)
chr2 (802-876)||(8984686-8984760)
chr2 (801-922)||(8992140-8992262)
chr2 (811-916)||(6471709-6471813)
chr2 (801-923)||(9016485-9016611)
chr2 (801-921)||(8988447-8988568)
chr2 (837-920)||(17225659-17225743)
chr2 (840-923)||(17275862-17275945)
chr2 (813-923)||(35701893-35702003)
chr2 (858-923)||(8912983-8913050)
chr2 (812-847)||(39814115-39814150)
[»] chr7 (2 HSPs)
chr7 (809-923)||(27134511-27134625)
chr7 (815-923)||(8128149-8128256)
[»] chr3 (1 HSPs)
chr3 (811-857)||(15758562-15758608)
[»] scaffold0549 (1 HSPs)
scaffold0549 (860-920)||(5447-5507)


Alignment Details
Target: chr4 (Bit Score: 902; Significance: 0; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 902; E-Value: 0
Query Start/End: Original strand, 7 - 943
Target Start/End: Complemental strand, 49107439 - 49106503
Alignment:
Q  7 aagcaagagatacaagatggatcaattccaccacacaaaaaggaaaaataataacgtaacgggact-gagtattgagtcattaaatatgtgtgtgcacca 105  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  49107439 aagcaagagatacaagatgtatcaattccaccacacaaaaaggaaaaataataacgtaacgggactagagtattgagtcattaaatatgtgtgtgcacca 49107340  T
Q  106 atggaagaagataacttgtcaaaatctacagtagcacttaaaatggcatttccttcttagacatttagctctgtagactcatcaaacatctttaaagagg 205  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49107339 atggaagaagataacttgtcaaaatctacagtagcacttacaatggcatttccttcttagacatttagctctgtagactcatcaaacatctttaaagagg 49107240  T
Q  206 gatgacatctcttagattcatcaatgtattatggaacttcactttcctgtacacgtgccaaccaatgcagtccaaataaggtacctacaaggaaagttgt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49107239 gatgacatctcttagattcatcaatgtattatggaacttcactttcctgtacacgtgccaaccaatgcagtccaaataaggtacctacaaggaaagttgt 49107140  T
Q  306 gaagcctaaacaacttcaagatatgatagaaagggcaatgtttgtagcttagagtaataaatattgtttggattaataaccatggaaattccctcaattg 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49107139 gaagcctaaacaacttcaagatatgatagaaagggcaatgtttgtagcttagagtaataaatattgtttggattaataaccatggaaattccctcaattg 49107040  T
Q  406 attgtgatgataatgtcaagtaacggagaattttgtagcataaaagtattacaagttatgaagtaaattccctaattgtgaaagtagccttacacttttc 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49107039 attgtgatgataatgtcaagtaacggagaattttgtagcataaaagtattacaagttatgaagtaaattccctaattgtgaaagtagccttacacttttc 49106940  T
Q  506 aaactcaaaactcatagttagtataattgcagactattttaatttgagatatgatacttatctcccattttgattttgattgatactggaggcattgttt 605  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  49106939 aaactcaaaactcatagttagtataattgcagactattttaatttgagatatgatacttatctcccattttgattttgattgatactggaggaattgttt 49106840  T
Q  606 caatgttgtattcaacaatctctcatcacatttaatatttataatgaaagtttgcagcagaaaataagtgttgagtcacgcacgggagtggtgtgtaaga 705  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49106839 caatgttgtattcaacaatctctcatcacatttaatatttataatgaaagtttgcagcagaaaataagtgttgagtcacgcacgggagtggtgtgtaaga 49106740  T
Q  706 gccagtcacaaggtggtactgcatataagtcccacatcgggtaatgaagaaaggaactgattagacagttgatataaaagcagaagccagccaccctttc 805  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49106739 gtcagtcacaaggtggtactgcatataagtcccacatcgggtaatgaagaaaggaactgattagacagttgatataaaagcagaagccagccaccctttc 49106640  T
Q  806 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaa 905  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49106639 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaa 49106540  T
Q  906 attacttttttgaggggggagaagtcatcttagtagct 943  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  49106539 attacttttttgag-ggggagaagtcaccttagtagct 49106503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 701 - 943
Target Start/End: Complemental strand, 49108848 - 49108607
Alignment:
Q  701 taagagccagtcacaaggtggtactgcatataagtcccacatcgggtaatgaagaaaggaactgattagacagttgatataaaagcagaagccagccacc 800  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||| ||||||||||||       
T  49108848 taagagtcagtcacaaggtggtactgcatataagtcccacatcgggtaataaggaaaggaactgaatagacagttgatataaaatcagaagccagcctat 49108749  T
Q  801 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgat 900  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||| |||||||||    
T  49108748 atttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgactcaatgggtcacacgat 49108649  T
Q  901 attaaattacttttttgaggggggagaagtcatcttagtagct 943  Q
    ||||||||||||||||||| ||||||||||||||  |||||||    
T  49108648 attaaattacttttttgag-ggggagaagtcatcacagtagct 49108607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 155; E-Value: 9e-82
Query Start/End: Original strand, 717 - 923
Target Start/End: Complemental strand, 50077397 - 50077192
Alignment:
Q  717 ggtggtactgcatataagtcccacatcgggtaatgaagaaaggaactgattagacagttgatataaaagcagaagccagccaccctttcaactcatacct 816  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||| | | ||||||||||||||||||||||||||||    ||||||||||||||||    
T  50077397 ggtggtactgcatataagtcccatatcgggtaatgaagaaagaaactaagt-gacagttgatataaaagcagaagccagctcttctttcaactcatacct 50077299  T
Q  817 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaattactttttt 916  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||    
T  50077298 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatggttcacatgatattaaattactttttt 50077199  T
Q  917 gaggggg 923  Q
    |||||||    
T  50077198 gaggggg 50077192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 776 - 923
Target Start/End: Complemental strand, 11652532 - 11652385
Alignment:
Q  776 gatataaaagcagaagccagccaccctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 875  Q
    ||||||||| ||||||||| ||   |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11652532 gatataaaaccagaagccaacccatcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 11652433  T
Q  876 tatgtggtccaatggatcacacgatattaaattacttttttgaggggg 923  Q
    ||||||| ||||||| |||||||||||||||||| |||||||||||||    
T  11652432 tatgtggcccaatgggtcacacgatattaaattatttttttgaggggg 11652385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 404 - 555
Target Start/End: Complemental strand, 50078011 - 50077860
Alignment:
Q  404 tgattgtgatgataatgtcaagtaacggagaattttgtagcataaaagtattacaagttatgaagtaaattccctaattgtgaaagtagccttacacttt 503  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||| || ||||||| |||||| |||||||| ||| |||| ||||||||| |||||    
T  50078011 tgattgtgatgataatgtcaagtaatagagaattttgtagcataaaagaatcacaagttctgaagtgaattccctgattatgaacgtagccttaaacttt 50077912  T
Q  504 tcaaactcaaaactcatagttagtataattgcagactattttaatttgagat 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50077911 tcaaactcaaaactcatagttagtataattgcagactattttaatttgagat 50077860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 776 - 923
Target Start/End: Complemental strand, 3461282 - 3461135
Alignment:
Q  776 gatataaaagcagaagccagccaccctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 875  Q
    ||||||||| || |||| |||  | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3461282 gatataaaaccataagcgagcatctctttcaattcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 3461183  T
Q  876 tatgtggtccaatggatcacacgatattaaattacttttttgaggggg 923  Q
    ||||||   |||||| ||||||||||||||||||||||||| ||||||    
T  3461182 tatgtgactcaatgggtcacacgatattaaattacttttttaaggggg 3461135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 328 - 506
Target Start/End: Original strand, 50112050 - 50112228
Alignment:
Q  328 atgatagaaagggcaatgtttgtagcttagagtaataaatattgtttggattaataaccatggaaattccctcaattgattgtgatgataatgtcaagta 427  Q
    ||||||||||| ||||||||| ||||||| |||||||| ||||||||| ||||||||| | |||||||  ||||  ||||||||||||||||||||||||    
T  50112050 atgatagaaagcgcaatgtttatagcttaaagtaataagtattgtttgaattaataacaagggaaattaactcagatgattgtgatgataatgtcaagta 50112149  T
Q  428 acggagaattttgtagcataaaagtattacaagttatgaagtaaattccctaattgtgaaagtagccttacacttttca 506  Q
    |  ||||||||||||||||||||| || |||||||||||||| ||||||| ||||||||| ||||||||| ||| ||||    
T  50112150 aaagagaattttgtagcataaaagaatcacaagttatgaagtgaattcccaaattgtgaacgtagccttaaactcttca 50112228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 810 - 921
Target Start/End: Complemental strand, 26998846 - 26998735
Alignment:
Q  810 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaatta 909  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||    
T  26998846 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatta 26998747  T
Q  910 cttttttgaggg 921  Q
    ||||||| ||||    
T  26998746 ctttttttaggg 26998735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 694 - 909
Target Start/End: Complemental strand, 49533846 - 49533638
Alignment:
Q  694 tggtgtgtaagagccagtcacaaggtggtactgcatataagtcccacatcgggtaatgaagaaaggaactgattagacagttgatataaaagcagaagcc 793  Q
    ||||||||||||| |||||||||  |||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||    
T  49533846 tggtgtgtaagagtcagtcacaaaatggtactgcataaaagtcccacatcggctaatgaagaaagaaactgattagacagttgatataaaaccagaagcc 49533747  T
Q  794 agccaccctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatc 893  Q
    ||||    || |||| ||||||||||||||||  ||||||||||||||||| | ||||||||||||     ||||||||||||||||    |||| | ||    
T  49533746 agcccttattccaacccatacctttctcggcc-cttggctaagatcaagtgca-tatctgttctta-----ttaatatctgatatgttactcaataggtc 49533654  T
Q  894 acacgatattaaatta 909  Q
    ||||||||||||||||    
T  49533653 acacgatattaaatta 49533638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 810 - 915
Target Start/End: Complemental strand, 26984773 - 26984668
Alignment:
Q  810 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaatta 909  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||    
T  26984773 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatta 26984674  T
Q  910 cttttt 915  Q
    ||||||    
T  26984673 cttttt 26984668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 810 - 921
Target Start/End: Original strand, 48205832 - 48205943
Alignment:
Q  810 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaatta 909  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||| | |||||||||| |||||||| ||| ||| | ||| ||||||||||||    
T  48205832 catacctttctcggccttttagctaagattaagtgtagtatctgttcttattaatttaatatcttatatgtggaccattggtttacatgatattaaatta 48205931  T
Q  910 cttttttgaggg 921  Q
    ||||||||||||    
T  48205932 cttttttgaggg 48205943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 837 - 934
Target Start/End: Original strand, 21503706 - 21503802
Alignment:
Q  837 atcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaattacttttttgaggggggagaagtcatc 934  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||| | |||||||||||||||||| |||||||| |||||||||||||||    
T  21503706 atcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaataggtcacacgatattaaattatttttttga-gggggagaagtcatc 21503802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 811 - 914
Target Start/End: Complemental strand, 41013651 - 41013548
Alignment:
Q  811 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaattac 910  Q
    |||| |||||||||||||||| |||||| |||| || ||| |||||||||| |||||||||||||||||||| |||| || ||||| | ||||||||||     
T  41013651 atacttttctcggccttttggttaagattaagtataatatatgttcttatccgtttaatatctgatatgtggaccaagggttcacatggtattaaattat 41013552  T
Q  911 tttt 914  Q
    ||||    
T  41013551 tttt 41013548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 845 - 918
Target Start/End: Original strand, 35806165 - 35806238
Alignment:
Q  845 tagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaattacttttttga 918  Q
    |||||| |||||||||||||||||||| ||||||||  || ||||  || ||||||||||||||||||||||||    
T  35806165 tagtatttgttcttatcagtttaatatatgatatgtaatctaatgagtcgcacgatattaaattacttttttga 35806238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 50112003 - 50112051
Alignment:
Q  7 aagcaagagatacaagatggatcaattccaccacacaaaaaggaaaaat 55  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  50112003 aagcaacagatacaagatggataaattccaccacacaaaaaggaaaaat 50112051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 836 - 915
Target Start/End: Original strand, 51578274 - 51578352
Alignment:
Q  836 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaattacttttt 915  Q
    ||||||||||| ||| ||||||||| |||| | ||||| |||| |||| |||| ||||||||||||||||||||||||||    
T  51578274 gatcaagtgtaatatatgttcttattagttca-tatctaatatatggttcaatagatcacacgatattaaattacttttt 51578352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 873 - 916
Target Start/End: Original strand, 54677590 - 54677633
Alignment:
Q  873 tgatatgtggtccaatggatcacacgatattaaattactttttt 916  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  54677590 tgatatgtggtctaatggatcacacgatattaaattactttttt 54677633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 816 - 916
Target Start/End: Original strand, 26982549 - 26982646
Alignment:
Q  816 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaattacttttt 915  Q
    ||||||||||| |||||||||||||||||||| |||||   |||| |||||| ||||| ||||||||  |||||  | ||| |||||||||| | |||||    
T  26982549 tttctcggcctcttggctaagatcaagtgtagcatctg---ttattagtttagtatctaatatgtggatcaatgatttacatgatattaaatcatttttt 26982645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 816 - 869
Target Start/End: Complemental strand, 6432010 - 6431957
Alignment:
Q  816 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaat 869  Q
    ||||||||||| ||||||||||||| || |||||||| ||||||| ||||||||    
T  6432010 tttctcggcctattggctaagatcaggtttagtatctcttcttattagtttaat 6431957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 180; Significance: 1e-96; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 404 - 731
Target Start/End: Complemental strand, 10796421 - 10796110
Alignment:
Q  404 tgattgtgatgataatgtcaagtaacggagaattttgtagcataaaagtattacaagttatgaagtaaattccctaattgtgaaagtagccttacacttt 503  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||| || ||||||| |||||| |||||||| ||| |||| ||||||||| |||||    
T  10796421 tgattgtgatgataatgtcaagtaatagagaattttgtagcataaaagaatcacaagttctgaagtgaattccctgattatgaacgtagccttaaacttt 10796322  T
Q  504 tcaaactcaaaactcatagttagtataattgcagactattttaatttgagatatgatacttatctcccattttgattttgattgatactggaggcattgt 603  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||             |||||||||    ||||||||||| |||||||    
T  10796321 tcaaactcaaaactcatagttagtataattgcagactattttaatttgagatgtg-------------attttgatt----ttgatactggatgcattgt 10796239  T
Q  604 ttcaa-tgttgtattcaacaatctctcatcacatttaatatttataatgaaagtttgcagcagaaaataagtgttgagtcacgcacgggagtggtgtgta 702  Q
    ||||| ||||||||||||||||||||| |||||||||| | | ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  10796238 ttcaattgttgtattcaacaatctctcgtcacatttaaaactgataatgaaaatttgcagcagaaaataagtggtgagtcacgcacgggagtggtgtgta 10796139  T
Q  703 agagccagtcacaaggtggtactgcatat 731  Q
    |||| ||||||||||||| ||||||||||    
T  10796138 agagtcagtcacaaggtgctactgcatat 10796110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 717 - 923
Target Start/End: Complemental strand, 10796088 - 10795883
Alignment:
Q  717 ggtggtactgcatataagtcccacatcgggtaatgaagaaaggaactgattagacagttgatataaaagcagaagccagccaccctttcaactcatacct 816  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||    ||||||||||||||||    
T  10796088 ggtggtactgcatataagtcccacatcgggtaatgaagaaagaaactgagt-gacagttgatataaaagcagaagccagctcttctttcaactcatacct 10795990  T
Q  817 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaattactttttt 916  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||    
T  10795989 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgacccaatgggtcacacgatattaaattactttttt 10795890  T
Q  917 gaggggg 923  Q
    |||||||    
T  10795889 gaggggg 10795883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 717 - 923
Target Start/End: Complemental strand, 10791850 - 10791645
Alignment:
Q  717 ggtggtactgcatataagtcccacatcgggtaatgaagaaaggaactgattagacagttgatataaaagcagaagccagccaccctttcaactcatacct 816  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||| | | |||||||||||||||||||||||||| |    ||||||||||||||||    
T  10791850 ggtggtactgcatataagtcccatatcgggtaatgaagaaagaaactaagt-gacagttgatataaaagcagaagccaactcttctttcaactcatacct 10791752  T
Q  817 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaattactttttt 916  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||    
T  10791751 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatgggtcacatgatattaaattactttttt 10791652  T
Q  917 gaggggg 923  Q
    |||||||    
T  10791651 gaggggg 10791645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 811 - 921
Target Start/End: Original strand, 8875691 - 8875803
Alignment:
Q  811 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaat--t 908  Q
    |||| |||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||  |    
T  8875691 atacatttcccggccttttggctaagatcaagtgtaatatctgttcttatcaatttaatatctgatatgtggtccaatagattacacgatattaaattat 8875790  T
Q  909 acttttttgaggg 921  Q
    |||||||||||||    
T  8875791 acttttttgaggg 8875803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 809 - 923
Target Start/End: Original strand, 30521242 - 30521356
Alignment:
Q  809 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaatt 908  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||  |  |||||||||||| ||||    
T  30521242 tcatacctttctcgaccttttggctgagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccatcgcctcacacgatattcaatt 30521341  T
Q  909 acttttttgaggggg 923  Q
      |||||||||||||    
T  30521342 tattttttgaggggg 30521356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 852 - 943
Target Start/End: Original strand, 11333273 - 11333363
Alignment:
Q  852 tgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaattacttttttgaggggggagaagtcatcttagtagct 943  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| || |||||||    
T  11333273 tgttcttatcagtttaatatctgatatgtggtccaacggatcacacgatattaaattacttttttga-gggggagaagtcacctcagtagct 11333363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 816 - 915
Target Start/End: Original strand, 21216032 - 21216131
Alignment:
Q  816 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaattacttttt 915  Q
    ||||| || |||||| ||||||||| || ||| |||| |||||||||||||||||||| ||||||||  ||||| ||||||  |||||||||||||||||    
T  21216032 tttcttggtcttttgactaagatcatgtatagcatctattcttatcagtttaatatcttatatgtggctcaatgaatcacaaaatattaaattacttttt 21216131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 862 - 919
Target Start/End: Original strand, 13136607 - 13136664
Alignment:
Q  862 agtttaatatctgatatgtggtccaatggatcacacgatattaaattacttttttgag 919  Q
    ||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||    
T  13136607 agtttaatatctgatatgtggaccaatggtccacacgatattaaattacttttttgag 13136664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 164; Significance: 4e-87; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 700 - 923
Target Start/End: Complemental strand, 38175746 - 38175523
Alignment:
Q  700 gtaagagccagtcacaaggtggtactgcatataagtcccacatcgggtaatgaagaaaggaactgattagacagttgatataaaagcagaagccagccac 799  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||| | || |||||| ||||||||||||| || || |      
T  38175746 gtaagagtcggtcacaaggtggtactgcatataagtcccacatcgggtaatgaagaaagaaactaagtatacagttcatataaaagcagatgcgaggctt 38175647  T
Q  800 cctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacga 899  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  38175646 catttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatgggtcacacga 38175547  T
Q  900 tattaaattacttttttgaggggg 923  Q
    ||||||||||||||||||||||||    
T  38175546 tattaaattacttttttgaggggg 38175523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 775 - 923
Target Start/End: Complemental strand, 14669850 - 14669702
Alignment:
Q  775 tgatataaaagcagaagccagccaccctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctg 874  Q
    |||||||||||||| | | ||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14669850 tgatataaaagcagcaacgagcccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctg 14669751  T
Q  875 atatgtggtccaatggatcacacgatattaaattacttttttgaggggg 923  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  14669750 atatgtggaccaatggttcacacgatattaaattacttttttgaggggg 14669702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 775 - 943
Target Start/End: Original strand, 14674447 - 14674614
Alignment:
Q  775 tgatataaaagcagaagccagccaccctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctg 874  Q
    |||||||||||||| | | |||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14674447 tgatataaaagcagcacctagccaatcttccaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctg 14674546  T
Q  875 atatgtggtccaatggatcacacgatattaaattacttttttgaggggggagaagtcatcttagtagct 943  Q
    |||||||| ||||||| ||||| ||||||||||||||||||||| |||||||||| ||| |||||||||    
T  14674547 atatgtggaccaatggttcacatgatattaaattacttttttga-gggggagaagccattttagtagct 14674614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 775 - 943
Target Start/End: Original strand, 14679825 - 14679992
Alignment:
Q  775 tgatataaaagcagaagccagccaccctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctg 874  Q
    |||||||||||||| | | |||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14679825 tgatataaaagcagcacctagccaatcttccaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctg 14679924  T
Q  875 atatgtggtccaatggatcacacgatattaaattacttttttgaggggggagaagtcatcttagtagct 943  Q
    |||||||| ||||||| ||||| ||||||||||||||||||||| |||||||||| ||| |||||||||    
T  14679925 atatgtggaccaatggttcacatgatattaaattacttttttga-gggggagaagccatattagtagct 14679992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 775 - 923
Target Start/End: Original strand, 14706054 - 14706202
Alignment:
Q  775 tgatataaaagcagaagccagccaccctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctg 874  Q
    |||||||||||||| | | ||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14706054 tgatataaaagcagcaccgagcccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctg 14706153  T
Q  875 atatgtggtccaatggatcacacgatattaaattacttttttgaggggg 923  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  14706154 atatgtggaccaatggttcacacgatattaaattacttttttgaggggg 14706202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 801 - 923
Target Start/End: Complemental strand, 14654455 - 14654333
Alignment:
Q  801 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgat 900  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  14654455 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgat 14654356  T
Q  901 attaaattacttttttgaggggg 923  Q
    |||||||||||||||||||||||    
T  14654355 attaaattacttttttgaggggg 14654333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 801 - 923
Target Start/End: Complemental strand, 14664246 - 14664124
Alignment:
Q  801 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgat 900  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  14664246 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgat 14664147  T
Q  901 attaaattacttttttgaggggg 923  Q
    |||||||||||||||||||||||    
T  14664146 attaaattacttttttgaggggg 14664124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 801 - 923
Target Start/End: Original strand, 14708570 - 14708692
Alignment:
Q  801 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgat 900  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  14708570 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgat 14708669  T
Q  901 attaaattacttttttgaggggg 923  Q
    |||||||||||||||||||||||    
T  14708670 attaaattacttttttgaggggg 14708692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 802 - 943
Target Start/End: Original strand, 14681592 - 14681732
Alignment:
Q  802 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgata 901  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  14681592 tttcaacttatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgata 14681691  T
Q  902 ttaaattacttttttgaggggggagaagtcatcttagtagct 943  Q
    ||||||||||||||||| |||||||||| ||| |||||||||    
T  14681692 ttaaattacttttttga-gggggagaagccattttagtagct 14681732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 802 - 923
Target Start/End: Original strand, 14683743 - 14683864
Alignment:
Q  802 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgata 901  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  14683743 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgata 14683842  T
Q  902 ttaaattacttttttgaggggg 923  Q
    ||||||||||||||||||||||    
T  14683843 ttaaattacttttttgaggggg 14683864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 801 - 923
Target Start/End: Original strand, 14716283 - 14716405
Alignment:
Q  801 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgat 900  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||    
T  14716283 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcacacgat 14716382  T
Q  901 attaaattacttttttgaggggg 923  Q
    |||||||||||||||||||||||    
T  14716383 attaaattacttttttgaggggg 14716405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 809 - 943
Target Start/End: Original strand, 14652525 - 14652658
Alignment:
Q  809 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaatt 908  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||    
T  14652525 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatt 14652624  T
Q  909 acttttttgaggggggagaagtcatcttagtagct 943  Q
    |||||||||| |||||||||| ||| |||||||||    
T  14652625 acttttttga-gggggagaagccattttagtagct 14652658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 809 - 943
Target Start/End: Original strand, 14662316 - 14662449
Alignment:
Q  809 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaatt 908  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||    
T  14662316 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatt 14662415  T
Q  909 acttttttgaggggggagaagtcatcttagtagct 943  Q
    |||||||||| |||||||||| ||| |||||||||    
T  14662416 acttttttga-gggggagaagccattttagtagct 14662449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 777 - 923
Target Start/End: Complemental strand, 28366338 - 28366191
Alignment:
Q  777 atataaaagcagaagccagccaccctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 876  Q
    ||||||||||||| || | || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28366338 atataaaagcagatgcgaacccctctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 28366239  T
Q  877 atgtg-gtccaatggatcacacgatattaaattacttttttgaggggg 923  Q
    |||||   ||||||| ||||||||||||||||||||||||| ||||||    
T  28366238 atgtgaccccaatgggtcacacgatattaaattacttttttaaggggg 28366191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 801 - 923
Target Start/End: Original strand, 33988062 - 33988184
Alignment:
Q  801 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgat 900  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||  |||||||||    
T  33988062 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgagtcacacgat 33988161  T
Q  901 attaaattacttttttgaggggg 923  Q
    |||||||||||||||| ||||||    
T  33988162 attaaattacttttttaaggggg 33988184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 802 - 904
Target Start/End: Original strand, 14676625 - 14676727
Alignment:
Q  802 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgata 901  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  14676625 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgata 14676724  T
Q  902 tta 904  Q
    |||    
T  14676725 tta 14676727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 806 - 915
Target Start/End: Complemental strand, 14667221 - 14667112
Alignment:
Q  806 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaa 905  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||| ||||| ||||||||    
T  14667221 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgatacgtggaccaatggttcacatgatattaa 14667122  T
Q  906 attacttttt 915  Q
    ||||||||||    
T  14667121 attacttttt 14667112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 812 - 927
Target Start/End: Complemental strand, 11872585 - 11872470
Alignment:
Q  812 tacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaattact 911  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||    
T  11872585 tacctttctcggccttttgactaagatcaagtgtactatctgttcttatcagtttaatatatgatatgtggttcaatgggtcacacgatattaaattact 11872486  T
Q  912 tttttgaggggggaga 927  Q
    ||||| | ||||||||    
T  11872485 ttttttaagggggaga 11872470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 815 - 894
Target Start/End: Original strand, 37422175 - 37422254
Alignment:
Q  815 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatca 894  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||    
T  37422175 ctttctcggccttttggctaagatcaagtgtagcatatgttcttatcagtttaatatctgatatgtggtccaacggatca 37422254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 805 - 881
Target Start/End: Original strand, 28698549 - 28698625
Alignment:
Q  805 caactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtg 881  Q
    |||||||||| |||||||| ||||||||||||||||| |||||||| | || |||||| |||||||| |||||||||    
T  28698549 caactcatacatttctcggtcttttggctaagatcaaatgtagtatatatttttatcaatttaatatttgatatgtg 28698625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 857 - 918
Target Start/End: Complemental strand, 7448486 - 7448425
Alignment:
Q  857 ttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaattacttttttga 918  Q
    |||| ||||||||||||||||||||||| |||| || | |||||||| ||||||||||||||    
T  7448486 ttattagtttaatatctgatatgtggtcaaatgaattatacgatattgaattacttttttga 7448425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 141; Significance: 2e-73; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 715 - 923
Target Start/End: Original strand, 7524875 - 7525082
Alignment:
Q  715 aaggtggtactgcatataagtcccacatcgggtaatgaagaaaggaactgattagacagttgatataaaagcagaagccagccaccctttcaactcatac 814  Q
    |||||||| ||||||| |||||||||||||||||||||||||| ||||||| |||||||| |||||||||||| | || ||      |||||| ||||||    
T  7524875 aaggtggtgctgcataaaagtcccacatcgggtaatgaagaaaagaactgagtagacagtggatataaaagca-atgcaaggtgttgtttcaagtcatac 7524973  T
Q  815 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaattactttt 914  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7524974 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatggatcacacgatattaaattactttt 7525073  T
Q  915 ttgaggggg 923  Q
    |||||||||    
T  7525074 ttgaggggg 7525082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 801 - 932
Target Start/End: Complemental strand, 1716567 - 1716436
Alignment:
Q  801 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtcc-aatggatcacacga 899  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  1716567 cttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaaatgggtcacacga 1716468  T
Q  900 tattaaattacttttttgaggggggagaagtca 932  Q
    ||||||||||||||||| | |||||||||||||    
T  1716467 tattaaattactttttt-aagggggagaagtca 1716436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 776 - 923
Target Start/End: Original strand, 3643607 - 3643754
Alignment:
Q  776 gatataaaagcagaagccagccaccctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 875  Q
    ||||||||| ||||||| || |   |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3643607 gatataaaaacagaagcgagacttactttaaattcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 3643706  T
Q  876 tatgtggtccaatggatcacacgatattaaattacttttttgaggggg 923  Q
    ||||||| ||| ||| ||||||||||||||||||||||||| ||||||    
T  3643707 tatgtggcccattgggtcacacgatattaaattacttttttaaggggg 3643754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 813 - 921
Target Start/End: Original strand, 4103249 - 4103357
Alignment:
Q  813 acctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaattactt 912  Q
    ||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |  |||||||||||||||| |||    
T  4103249 acctttctcagcattttggttaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatagtccacacgatattaaattgctt 4103348  T
Q  913 ttttgaggg 921  Q
    |||| ||||    
T  4103349 tttttaggg 4103357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 811 - 918
Target Start/End: Original strand, 16037861 - 16037966
Alignment:
Q  811 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaattac 910  Q
    |||| |||||||||| |||  ||||||||||||||||||| ||||||||| |  ||||||| ||||| |||||| ||||| ||| |||||||||||||||    
T  16037861 atacttttctcggccgtttt-ctaagatcaagtgtagtatttgttcttattatcttaatatttgata-gtggtctaatgggtcaaacgatattaaattac 16037958  T
Q  911 ttttttga 918  Q
    ||||||||    
T  16037959 ttttttga 16037966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 842 - 922
Target Start/End: Original strand, 5350672 - 5350752
Alignment:
Q  842 gtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaattacttttttgagggg 922  Q
    ||||||||||| || ||||||||||||||||||||||||||  ||||||  ||||||||||||||||  ||| ||||||||    
T  5350672 gtgtagtatctattgttatcagtttaatatctgatatgtgggacaatggtccacacgatattaaatttatttcttgagggg 5350752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 816 - 880
Target Start/End: Complemental strand, 19261216 - 19261152
Alignment:
Q  816 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgt 880  Q
    |||||| ||||||||  |||||||||||||| ||| |||||||||| ||| ||||||||||||||    
T  19261216 tttctcagccttttgattaagatcaagtgtaatatatgttcttatccgttaaatatctgatatgt 19261152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 2e-67; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 709 - 923
Target Start/End: Original strand, 40054212 - 40054426
Alignment:
Q  709 agtcacaaggtggtactgcatataagtcccacatcgggtaatgaagaaaggaactgattagacagttgatataaaagcagaagccagccaccctttcaac 808  Q
    |||| ||||||  ||||||||| |||||||||||||  ||||||||||||||||||| |||||| | |||||||||| ||| || || |  | ||| ||     
T  40054212 agtcccaaggtactactgcataaaagtcccacatcgaataatgaagaaaggaactgagtagacactggatataaaagaagatgcgaggcctcattttaat 40054311  T
Q  809 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaatt 908  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  40054312 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtcatacgatattaaatt 40054411  T
Q  909 acttttttgaggggg 923  Q
    |||||||||||||||    
T  40054412 acttttttgaggggg 40054426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 776 - 923
Target Start/End: Complemental strand, 41841292 - 41841145
Alignment:
Q  776 gatataaaagcagaagccagccaccctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 875  Q
    ||||||||||||||||||| ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41841292 gatataaaagcagaagccaacccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 41841193  T
Q  876 tatgtggtccaatggatcacacgatattaaattacttttttgaggggg 923  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  41841192 tatgtggtccaatgggtcacacgatattaaattacttttttgatgggg 41841145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 776 - 934
Target Start/End: Original strand, 44878950 - 44879107
Alignment:
Q  776 gatataaaagcagaagccagccaccctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 875  Q
    |||||||||||||| || ||||   | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44878950 gatataaaagcagaggcgagcccaacattcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 44879049  T
Q  876 tatgtggtccaatggatcacacgatattaaattacttttttgaggggggagaagtcatc 934  Q
    |||||||  |||||| ||||| ||||||||||||||||||||| |||||||||||||||    
T  44879050 tatgtggctcaatgggtcacatgatattaaattacttttttga-gggggagaagtcatc 44879107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 776 - 934
Target Start/End: Complemental strand, 44880971 - 44880814
Alignment:
Q  776 gatataaaagcagaagccagccaccctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 875  Q
    |||||||||||||| || ||||   | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44880971 gatataaaagcagaggcgagcccaacattcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 44880872  T
Q  876 tatgtggtccaatggatcacacgatattaaattacttttttgaggggggagaagtcatc 934  Q
    |||||||  |||||| ||||| |||||||||||||||||||||| ||||||||||||||    
T  44880871 tatgtggctcaatgggtcacatgatattaaattacttttttgag-ggggagaagtcatc 44880814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 806 - 943
Target Start/End: Complemental strand, 10944509 - 10944373
Alignment:
Q  806 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaa 905  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||| ||||||||||||||    
T  10944509 aactcatacctttctcgaccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatcttatatgtggacaaatggttcacacgatattaa 10944410  T
Q  906 attacttttttgaggggggagaagtcatcttagtagct 943  Q
    |||||||||||||  ||||||||| ||| |||||||||    
T  10944409 attacttttttga-tggggagaagccattttagtagct 10944373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 809 - 908
Target Start/End: Original strand, 37682057 - 37682156
Alignment:
Q  809 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaatt 908  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||    
T  37682057 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 37682156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 811 - 923
Target Start/End: Original strand, 37679757 - 37679869
Alignment:
Q  811 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaattac 910  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||  |||||||||||      
T  37679757 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacttgatattaaattta 37679856  T
Q  911 ttttttgaggggg 923  Q
    ||| |||||||||    
T  37679857 tttattgaggggg 37679869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 801 - 909
Target Start/End: Complemental strand, 42555198 - 42555090
Alignment:
Q  801 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgat 900  Q
    |||||||||||||||||||| |  |||||||||||||||||||| || ||||||| ||||||||||||||| ||||||||||| ||||| ||||||||||    
T  42555198 ctttcaactcatacctttcttgatcttttggctaagatcaagtgcagaatctgtttttatcagtttaatatttgatatgtggttcaatgaatcacacgat 42555099  T
Q  901 attaaatta 909  Q
    |||||||||    
T  42555098 attaaatta 42555090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 826 - 934
Target Start/End: Original strand, 44582870 - 44582977
Alignment:
Q  826 ttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaattacttttttgagggggga 925  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||   | ||||||||||||||||||||| ||| ||    
T  44582870 ttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtagctcaatggattctatgatattaaattacttttttga-gggaga 44582968  T
Q  926 gaagtcatc 934  Q
    |||||||||    
T  44582969 gaagtcatc 44582977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 776 - 882
Target Start/End: Complemental strand, 42220985 - 42220880
Alignment:
Q  776 gatataaaagcagaagccagccaccctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 875  Q
    |||||||||||||| || |||    |||||||||||||| ||| |||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  42220985 gatataaaagcagaggcgagcatagctttcaactcatacatttttcggtcttttggctaagatcaagtgtagtatct-ttcttattagtttaatatctga 42220887  T
Q  876 tatgtgg 882  Q
    |||||||    
T  42220886 tatgtgg 42220880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 801 - 883
Target Start/End: Original strand, 42092013 - 42092094
Alignment:
Q  801 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggt 883  Q
    |||| |||||||||||||||  |||||||| |||| || ||||||| ||| ||||||||||||||||||||||||||||||||    
T  42092013 ctttaaactcatacctttctttgccttttg-ctaaaattaagtgtaatatttgttcttatcagtttaatatctgatatgtggt 42092094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 802 - 852
Target Start/End: Complemental strand, 42872564 - 42872514
Alignment:
Q  802 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatct 852  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42872564 tttcaactcatacctttctcggccttttggctaagattaagtgtagtatct 42872514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 869 - 941
Target Start/End: Complemental strand, 42554709 - 42554638
Alignment:
Q  869 tatctgatatgtggtccaatggatcacacgatattaaattacttttttgaggggggagaagtcatcttagtag 941  Q
    ||||||||||||||  ||||| || |||||||||||||||| ||||||||| ||||||||| ||||| |||||    
T  42554709 tatctgatatgtgggtcaatgaattacacgatattaaattatttttttgag-ggggagaagccatctcagtag 42554638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 862 - 915
Target Start/End: Original strand, 44583110 - 44583162
Alignment:
Q  862 agtttaatatctgatatgtggtccaatggatcacacgatattaaattacttttt 915  Q
    ||||||||||||||||||||  | |||||  |||||||||||||||||||||||    
T  44583110 agtttaatatctgatatgtgaac-aatggtacacacgatattaaattacttttt 44583162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 1e-59; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 709 - 923
Target Start/End: Original strand, 43849952 - 43850163
Alignment:
Q  709 agtcacaaggtggtactgcatataagtcccacatcgggtaatgaagaaaggaactgattagacagttgatataaaagcagaagcc-agccaccctttcaa 807  Q
    |||| ||||||| |||||||||   ||||||||||||||||| ||||||||| |||| |||||||  |||||||||||||| ||  ||||    ||||||    
T  43849952 agtcccaaggtgctactgcata---gtcccacatcgggtaatcaagaaaggatctgagtagacagaggatataaaagcagatgcgtagcctta-tttcaa 43850047  T
Q  808 ctcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaat 907  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||| ||||||||||    
T  43850048 ctcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgagtcacatgatattaaat 43850147  T
Q  908 tacttttttgaggggg 923  Q
     |||||||||||||||    
T  43850148 cacttttttgaggggg 43850163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 775 - 924
Target Start/End: Original strand, 30731974 - 30732123
Alignment:
Q  775 tgatataaaagcagaagccagccaccctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctg 874  Q
    |||||||||||||| | | ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  30731974 tgatataaaagcagcaacgagcccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatcta 30732073  T
Q  875 atatgtggtccaatggatcacacgatattaaattacttttttgagggggg 924  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  30732074 atatgtggaccaatggttcacacgatattaaattacttttttgagggggg 30732123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 808 - 923
Target Start/End: Complemental strand, 2841125 - 2841010
Alignment:
Q  808 ctcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaat 907  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2841125 ctcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggttcaatggatcacacgatattaaat 2841026  T
Q  908 tacttttttgaggggg 923  Q
    ||||||||||||||||    
T  2841025 tacttttttgaggggg 2841010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 803 - 923
Target Start/End: Original strand, 32918074 - 32918194
Alignment:
Q  803 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatat 902  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||    
T  32918074 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatat 32918173  T
Q  903 taaattacttttttgaggggg 923  Q
    |||||||||||||||||||||    
T  32918174 taaattacttttttgaggggg 32918194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 806 - 943
Target Start/End: Original strand, 30733985 - 30734121
Alignment:
Q  806 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaa 905  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||    
T  30733985 aacttatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaa 30734084  T
Q  906 attacttttttgaggggggagaagtcatcttagtagct 943  Q
    ||||||||||| | |||||||||| ||| |||||||||    
T  30734085 attacttttttta-gggggagaagccattttagtagct 30734121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 801 - 923
Target Start/End: Original strand, 8973304 - 8973427
Alignment:
Q  801 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcac-acga 899  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||| ||||||| |||| || |    
T  8973304 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgattagtggcccaatgggtcacaacaa 8973403  T
Q  900 tattaaattacttttttgaggggg 923  Q
    ||||||||||||||||| ||||||    
T  8973404 tattaaattacttttttaaggggg 8973427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 801 - 919
Target Start/End: Original strand, 9026778 - 9026897
Alignment:
Q  801 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcac-acga 899  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||| |||| ||      
T  9026778 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgattagtggcccaatgggtcacaacag 9026877  T
Q  900 tattaaattacttttttgag 919  Q
    ||||||||||||||||||||    
T  9026878 tattaaattacttttttgag 9026897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 806 - 923
Target Start/End: Original strand, 9008018 - 9008136
Alignment:
Q  806 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatca-cacgatatta 904  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||| |||  ||  |||||    
T  9008018 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgattagtggcccaatgggtcataacagtatta 9008117  T
Q  905 aattacttttttgaggggg 923  Q
    |||||||||||||||||||    
T  9008118 aattacttttttgaggggg 9008136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 801 - 921
Target Start/End: Original strand, 9020839 - 9020960
Alignment:
Q  801 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcac-acga 899  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||| |||| ||      
T  9020839 ctttcaattcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcaatttaatatctgagatgtggcccaatgggtcactacag 9020938  T
Q  900 tattaaattacttttttgaggg 921  Q
    ||||||||||||||||||||||    
T  9020939 tattaaattacttttttgaggg 9020960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 801 - 882
Target Start/End: Original strand, 9032045 - 9032126
Alignment:
Q  801 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 882  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9032045 ctttcaactcatacctttctcggccttttggttaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 9032126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 811 - 923
Target Start/End: Complemental strand, 19232504 - 19232393
Alignment:
Q  811 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaattac 910  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||  ||| ||| |||||| ||||||||||||    
T  19232504 atacctttctcggccttttggctaagatcaagtgtaatatctgttcttatcagtttaata-ctgatatgtgacccattgggtcacacaatattaaattac 19232406  T
Q  911 ttttttgaggggg 923  Q
     ||||||||||||    
T  19232405 ctttttgaggggg 19232393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 801 - 923
Target Start/End: Original strand, 9030390 - 9030512
Alignment:
Q  801 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgat 900  Q
    |||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||| | ||||  |||||| ||||||  |    
T  9030390 ctttcaactcatatttttcttggccttttggctaagatcaagtgtagtatctgttcttatcaatttaatatttgagaagtggctcaatgggtcacacagt 9030489  T
Q  901 attaaattacttttttgaggggg 923  Q
    |||||||||||||||||||||||    
T  9030490 attaaattacttttttgaggggg 9030512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 801 - 890
Target Start/End: Original strand, 9023439 - 9023528
Alignment:
Q  801 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatgg 890  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||| |||||||    
T  9023439 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgattagtggcccaatgg 9023528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 801 - 876
Target Start/End: Original strand, 8979314 - 8979389
Alignment:
Q  801 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 876  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8979314 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 8979389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 816 - 916
Target Start/End: Complemental strand, 10763978 - 10763878
Alignment:
Q  816 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaattacttttt 915  Q
    |||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||  || || |||||||||||||||||    
T  10763978 tttctcggtcttttgactaagatcaagtgtagtatatgttcttatcagtttaatatctgatatgtggatcaatggtccatacaatattaaattacttttt 10763879  T
Q  916 t 916  Q
    |    
T  10763878 t 10763878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 802 - 876
Target Start/End: Original strand, 8984686 - 8984760
Alignment:
Q  802 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 876  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||    
T  8984686 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatttgttcttattagtttaatatttgat 8984760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 801 - 922
Target Start/End: Original strand, 8992140 - 8992262
Alignment:
Q  801 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcac-acga 899  Q
    |||| ||||||| |||||||| | |||||||||||||||||||||||||| ||||||||| |||| ||||||||||  |||| ||||||| |||| |  |    
T  8992140 cttttaactcatgcctttctcagtcttttggctaagatcaagtgtagtatatgttcttatgagttcaatatctgattagtggcccaatgggtcacaataa 8992239  T
Q  900 tattaaattacttttttgagggg 922  Q
    |||||||||||||||||||||||    
T  8992240 tattaaattacttttttgagggg 8992262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 811 - 916
Target Start/End: Complemental strand, 6471813 - 6471709
Alignment:
Q  811 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaattac 910  Q
    |||||||| ||| ||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||  |||| ||||||||||| |||||||| ||||    
T  6471813 atacctttttcgaccttttggctaagat-aagtgtagtatatgttcttattagtttaatatctgatatacggtctaatggatcacatgatattaagttac 6471715  T
Q  911 tttttt 916  Q
    ||||||    
T  6471714 tttttt 6471709  T

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Target: chr2; HSP #19
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 801 - 923
Target Start/End: Original strand, 9016485 - 9016611
Alignment:
Q  801 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatc---agtttaatatctgatatgtggtccaatggatcac-a 896  Q
    |||| ||||||||||||  ||| |||||||||||||||||| |||||||||||||||||||   |||||||||||||||  |||| ||||||| |||| |    
T  9016485 cttttaactcataccttattcgaccttttggctaagatcaaatgtagtatctgttcttatcagtagtttaatatctgattagtggcccaatgggtcacaa 9016584  T
Q  897 cgatattaaattacttttttgaggggg 923  Q
    |  ||||||||||||||||||||||||    
T  9016585 cagtattaaattacttttttgaggggg 9016611  T

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Target: chr2; HSP #20
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 801 - 921
Target Start/End: Original strand, 8988447 - 8988568
Alignment:
Q  801 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcac-acga 899  Q
    ||||||||| ||||| |||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||  |||   |||||| || | || |    
T  8988447 ctttcaacttataccattcttggccttttggcgaagatcaagtgtagtatttgttcttatcagtttaatatttgatcagtgactcaatggttctcaacaa 8988546  T
Q  900 tattaaattacttttttgaggg 921  Q
    ||||||||||||||||||||||    
T  8988547 tattaaattacttttttgaggg 8988568  T

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Target: chr2; HSP #21
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 837 - 920
Target Start/End: Complemental strand, 17225743 - 17225659
Alignment:
Q  837 atcaagtgtagtatctgttctt-atcagtttaatatctgatatgtggtccaatggatcacacgatattaaattacttttttgagg 920  Q
    ||||||||||||||||||| || ||| |||||||| ||||||| |||||||||| |||| |||||||||||||||||||||||||    
T  17225743 atcaagtgtagtatctgttttttatcggtttaataactgatatctggtccaatgaatcatacgatattaaattacttttttgagg 17225659  T

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Target: chr2; HSP #22
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 840 - 923
Target Start/End: Original strand, 17275862 - 17275945
Alignment:
Q  840 aagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaattacttttttgaggggg 923  Q
    |||||||||||  ||||||||||||| ||| | | ||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  17275862 aagtgtagtatacgttcttatcagttcaatctttaatatgtggtccaatggatcacacgatattgaattacatttttgaggggg 17275945  T

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Target: chr2; HSP #23
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 813 - 923
Target Start/End: Original strand, 35701893 - 35702003
Alignment:
Q  813 acctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaattactt 912  Q
    |||||||||  | |||||||||||||||||||| |||| |||| |||| |||||||||| |||||||||| ||||    |||||||||||||  ||||||    
T  35701893 acctttctcaactttttggctaagatcaagtgtggtatttgtttttattagtttaatatttgatatgtgggccaacaagtcacacgatattagtttactt 35701992  T
Q  913 ttttgaggggg 923  Q
    |||||||||||    
T  35701993 ttttgaggggg 35702003  T

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Target: chr2; HSP #24
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 858 - 923
Target Start/End: Original strand, 8912983 - 8913050
Alignment:
Q  858 tatcagtttaatatctgatatgtggtccaatggatcacac--gatattaaattacttttttgaggggg 923  Q
    ||||| |||||||| | ||||||||||||||| |||||||  ||||||||||||||||||||||||||    
T  8912983 tatcattttaatatataatatgtggtccaatgaatcacacatgatattaaattacttttttgaggggg 8913050  T

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Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 812 - 847
Target Start/End: Original strand, 39814115 - 39814150
Alignment:
Q  812 tacctttctcggccttttggctaagatcaagtgtag 847  Q
    ||||||||||||||||||||||| ||||||||||||    
T  39814115 tacctttctcggccttttggctatgatcaagtgtag 39814150  T

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Target: chr7 (Bit Score: 71; Significance: 1e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 809 - 923
Target Start/End: Original strand, 27134511 - 27134625
Alignment:
Q  809 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaatt 908  Q
    |||||||||| ||||||||||  |||||||||| | ||||||||||||||||  |||||||||||||||||||||| ||||  ||| |||||||||||||    
T  27134511 tcatacctttttcggccttttcactaagatcaaatctagtatctgttcttattggtttaatatctgatatgtggtctaatgagtcaaacgatattaaatt 27134610  T
Q  909 acttttttgaggggg 923  Q
    |||||||||||||||    
T  27134611 acttttttgaggggg 27134625  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 815 - 923
Target Start/End: Original strand, 8128149 - 8128256
Alignment:
Q  815 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaattactttt 914  Q
    ||||||||  ||||||| |||||| ||||||||||| ||||||| | |||||||||| |||||||||| ||||||| |||||| ||||||||||  |||     
T  8128149 ctttctcgttcttttggttaagattaagtgtagtatatgttctttttagtttaatatatgatatgtgggccaatgg-tcacacaatattaaatttatttc 8128247  T
Q  915 ttgaggggg 923  Q
    |||||||||    
T  8128248 ttgaggggg 8128256  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 811 - 857
Target Start/End: Complemental strand, 15758608 - 15758562
Alignment:
Q  811 atacctttctcggccttttggctaagatcaagtgtagtatctgttct 857  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  15758608 atacctttctcagccttttggctaagatcaagtgtaatatctgttct 15758562  T

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Target: scaffold0549 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 860 - 920
Target Start/End: Original strand, 5447 - 5507
Alignment:
Q  860 tcagtttaatatctgatatgtggtccaatggatcacacgatattaaattacttttttgagg 920  Q
    ||||||||||||||||||| ||| ||||| | |||||||||||||||||  ||||||||||    
T  5447 tcagtttaatatctgatatatgggccaattgttcacacgatattaaatttattttttgagg 5507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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