View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5215-Insertion-6 (Length: 296)
Name: NF5215-Insertion-6
Description: NF5215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5215-Insertion-6 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 8 - 296
Target Start/End: Complemental strand, 13856095 - 13855807
Alignment:
| Q |
8 |
agaattgccctaacacaataccatccttcgtcaccaagtgagccaagagcatcaagatccggcttcacacggatgttattctcgagaaaatcaggatcag |
107 |
Q |
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| T |
13856095 |
agaattgccctaacacaataccatccttcgtcaccaagtgagccaagagcatcaagatccggcttcacacggatgttattctcgagaaaatcaggatcag |
13855996 |
T |
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| Q |
108 |
caccaaatgtaaaacaggtatgaatctgttaaatgccaaataaaaccatttatcagtgcagaacatgtatgcaaaagatataacatttctaacacagcat |
207 |
Q |
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| T |
13855995 |
caccaaatgtaaaacaggtgtgaatctgttcaatgccaaataaaaccatttatcagtgcagaacatgtatgcaaaagatataacatttctaacacagcat |
13855896 |
T |
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| Q |
208 |
aaccattagaacataattcagaatcataactggtgcttgaaaacttgatgtctaaacttgtgattgaaatatacacacatatttacaac |
296 |
Q |
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| T |
13855895 |
aatcattagaacataattcagaatcataactggtgcttgaaaacttgatgtctaaacttgtgattgaaatatacacacatatatacaac |
13855807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 8 - 296
Target Start/End: Complemental strand, 13852216 - 13851944
Alignment:
| Q |
8 |
agaattgccctaacacaataccatccttcgtcaccaagtgagccaagagcatcaagatccggcttcacacggatgttattctcgagaaaatcaggatcag |
107 |
Q |
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| T |
13852216 |
agaattgccctaacacaataccatccttcgtcaccaagagagccgagagcgtcgagatccggcttcacgcggatgtcattctcaagaaagtcaggatcag |
13852117 |
T |
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| Q |
108 |
caccaaatgtaaaacaggtatgaatctgttaaatgccaaataaaaccatttatcagtgcagaacatgtatgcaaaagatataacatttctaacacagcat |
207 |
Q |
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| T |
13852116 |
caccaaatgtaaaacaggtgtgaatctgtgcaatgtcaaataaaaccatatatcagtgcagaacatgtatgcaaaagatataac---------------- |
13852033 |
T |
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| Q |
208 |
aaccattagaacataattcagaatcataactggtgcttgaaaacttgatgtctaaacttgtgattgaaatatacacacatatttacaac |
296 |
Q |
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| T |
13852032 |
aatcattagaacataattcagaatcataactggtgcttgaaaacttgatgtctaagcttgtgattgaaatatacacacatatatacaac |
13851944 |
T |
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