View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5215_high_1 (Length: 649)

Name: NF5215_high_1
Description: NF5215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5215_high_1
NF5215_high_1
[»] chr5 (7 HSPs)
chr5 (48-230)||(7497998-7498176)
chr5 (370-629)||(7497556-7497816)
chr5 (284-338)||(7497851-7497905)
chr5 (194-262)||(28056382-28056450)
chr5 (553-600)||(7497500-7497547)
chr5 (194-242)||(4800521-4800570)
chr5 (194-242)||(32379949-32379997)
[»] chr2 (1 HSPs)
chr2 (195-242)||(43621968-43622015)
[»] scaffold0252 (1 HSPs)
scaffold0252 (194-236)||(8001-8043)
[»] chr4 (2 HSPs)
chr4 (239-277)||(24088521-24088559)
chr4 (194-242)||(24088584-24088632)
[»] chr8 (3 HSPs)
chr8 (194-235)||(40614217-40614258)
chr8 (194-242)||(12697733-12697781)
chr8 (194-242)||(42012610-42012658)
[»] chr7 (2 HSPs)
chr7 (194-235)||(47530318-47530359)
chr7 (182-242)||(37385253-37385313)
[»] chr3 (3 HSPs)
chr3 (177-229)||(12094422-12094475)
chr3 (194-242)||(28300668-28300716)
chr3 (194-242)||(50280107-50280155)
[»] chr1 (2 HSPs)
chr1 (181-242)||(34395939-34396000)
chr1 (194-242)||(39380839-39380887)
[»] scaffold0002 (1 HSPs)
scaffold0002 (194-242)||(440721-440769)


Alignment Details
Target: chr5 (Bit Score: 154; Significance: 2e-81; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 48 - 230
Target Start/End: Complemental strand, 7498176 - 7497998
Alignment:
Q  48 agtaccgtcttcatttgcccaactcaattttccactgcctgaaaccccgctaagttgtatgagtataaaaattaatttgcttttgagataaagtgcaaaa 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7498176 agtaccgtcttcatttgcccaactcaattttccactgcctgaaaccccgctaagttgtatgagtataaaaattaatttgcttttgagataaagtgcaaaa 7498077  T
Q  148 aggatttcaataataaatggcagcataaattttatttataaaatacaaatgatatttatacaactactctatgacaacttttg 230  Q
    ||||||||||||||||||||| |||||||||    |||||||||| |||| ||||||||||||||||||||||||||||||||    
T  7498076 aggatttcaataataaatggccgcataaatt----ttataaaatagaaattatatttatacaactactctatgacaacttttg 7497998  T

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Target: chr5; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 370 - 629
Target Start/End: Complemental strand, 7497816 - 7497556
Alignment:
Q  370 gttgagatttttggttgaaaagctgtttaatatagtaga--taataaggagtggtcccttatcttaaggattttagtcctccannnnnnngttgtcttac 467  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||  |||||||||||||||||||       ||||||||||    
T  7497816 gttgagatttttggttgaaaagctgtttaatatagtagagataataagaagtggtcccttattataaggattttagtcctccatttttt-gttgtcttac 7497718  T
Q  468 atgaagtggtaaagactatatgaannnnnnnnnnnnnnnnnnnnnnattgcacaactgtaaggtccttaattcgaattcaggtgaaggtgtctagcctca 567  Q
    ||||||||||||||||||||||||                      |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7497717 atgaagtggtaaagactatatgaaacacacacaactcacacacacaattgcacaactgtaaggtccttaattcgaactcaggtgaaggtgtctagcctca 7497618  T
Q  568 aaatagtgatcttagactttaaggactagtcctcataaggtcctgaattcgaactcatgtga 629  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||    
T  7497617 aaatagtgatcttagactttaaggactggtccttataagatcctgaattcgaactcatgtga 7497556  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 284 - 338
Target Start/End: Complemental strand, 7497905 - 7497851
Alignment:
Q  284 actaaatggttgtacaaacatcattactttttaatttttataaaaacaatgtata 338  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  7497905 actaaattgttgtacaaatatcattactttttaatttttataaaaacaatgtata 7497851  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 194 - 262
Target Start/End: Complemental strand, 28056450 - 28056382
Alignment:
Q  194 aaatgatatttatacaactactctatgacaacttttgaacaactatctcgtactcacatcatgtgttta 262  Q
    ||||||||||  || ||||| | ||||| |||||||||||| || ||||||||||||||||||| ||||    
T  28056450 aaatgatattcgtaaaactattttatgataacttttgaacatctctctcgtactcacatcatgttttta 28056382  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 553 - 600
Target Start/End: Complemental strand, 7497547 - 7497500
Alignment:
Q  553 aggtgtctagcctcaaaatagtgatcttagactttaaggactagtcct 600  Q
    ||||||||||||| | ||||||||||| || |||||||||||||||||    
T  7497547 aggtgtctagcctaagaatagtgatctcaggctttaaggactagtcct 7497500  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 4800570 - 4800521
Alignment:
Q  194 aaatgatatttatacaactactctatgacaactttt-gaacaactatctc 242  Q
    |||||||||||||||||||||| | ||||||||||| |||||||| ||||    
T  4800570 aaatgatatttatacaactactttttgacaacttttggaacaactctctc 4800521  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 32379997 - 32379949
Alignment:
Q  194 aaatgatatttatacaactactctatgacaacttttgaacaactatctc 242  Q
    ||||| ||||| |||||||| | ||||||||||||||||||||| ||||    
T  32379997 aaatggtatttgtacaactagtttatgacaacttttgaacaactttctc 32379949  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 43622015 - 43621968
Alignment:
Q  195 aatgatatttatacaactactctatgacaacttttgaacaactatctc 242  Q
    |||||||||| |||||||| | ||||||||||||||||||||| ||||    
T  43622015 aatgatatttgtacaactattttatgacaacttttgaacaactttctc 43621968  T

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Target: scaffold0252 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 8043 - 8001
Alignment:
Q  194 aaatgatatttatacaactactctatgacaacttttgaacaac 236  Q
    |||||||||||||||||| | | ||||||||||||||||||||    
T  8043 aaatgatatttatacaaccattttatgacaacttttgaacaac 8001  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 24088559 - 24088521
Alignment:
Q  239 tctcgtactcacatcatgtgtttactctcttccttcctt 277  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  24088559 tctcatactcacatcatgtgtttactctctttcttcctt 24088521  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 24088632 - 24088584
Alignment:
Q  194 aaatgatatttatacaactactctatgacaacttttgaacaactatctc 242  Q
    ||||||||||| |||||| | | ||||||||||||||||||||| ||||    
T  24088632 aaatgatatttgtacaaccattttatgacaacttttgaacaactctctc 24088584  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 40614258 - 40614217
Alignment:
Q  194 aaatgatatttatacaactactctatgacaacttttgaacaa 235  Q
    |||||||||||||||||||||| ||||| || ||||||||||    
T  40614258 aaatgatatttatacaactactttatgataatttttgaacaa 40614217  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 12697781 - 12697733
Alignment:
Q  194 aaatgatatttatacaactactctatgacaacttttgaacaactatctc 242  Q
    |||||||||||||||||||| | ||||| || |||||||||||| ||||    
T  12697781 aaatgatatttatacaactattttatgataatttttgaacaactttctc 12697733  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 42012658 - 42012610
Alignment:
Q  194 aaatgatatttatacaactactctatgacaacttttgaacaactatctc 242  Q
    |||||||||||||||||||||| ||||| |||||||  |||||| ||||    
T  42012658 aaatgatatttatacaactactttatgataactttttgacaactttctc 42012610  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 47530359 - 47530318
Alignment:
Q  194 aaatgatatttatacaactactctatgacaacttttgaacaa 235  Q
    |||||||||||||||||| | | |||||||||||||||||||    
T  47530359 aaatgatatttatacaaccattttatgacaacttttgaacaa 47530318  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 37385313 - 37385253
Alignment:
Q  182 tttataaaatacaaatgatatttatacaactactctatgacaacttttgaacaactatctc 242  Q
    ||||||||| | ||||||||||| |||||||| | | |||||||||||| |||||| ||||    
T  37385313 tttataaaagataaatgatatttgtacaactattttttgacaacttttgtacaactttctc 37385253  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 12094475 - 12094422
Alignment:
Q  177 ttttatttataaaat-acaaatgatatttatacaactactctatgacaactttt 229  Q
    ||||||||||||||| | |||||||||||||||||||| | |||||||| ||||    
T  12094475 ttttatttataaaatgagaaatgatatttatacaactattttatgacaattttt 12094422  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 28300716 - 28300668
Alignment:
Q  194 aaatgatatttatacaactactctatgacaacttttgaacaactatctc 242  Q
    ||||||||||| |||||| ||| ||||||||||||| ||||||| ||||    
T  28300716 aaatgatatttgtacaaccactttatgacaactttttaacaactttctc 28300668  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 50280155 - 50280107
Alignment:
Q  194 aaatgatatttatacaactactctatgacaacttttgaacaactatctc 242  Q
    ||||||||||| |||||| | |||||||||||||||| |||||| ||||    
T  50280155 aaatgatatttgtacaaccattctatgacaacttttgtacaactttctc 50280107  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 34396000 - 34395939
Alignment:
Q  181 atttataaaatacaaatgatatttatacaactactctatgacaacttttgaacaactatctc 242  Q
    |||||||||  | ||||||||||| |||| ||| | ||||||||||||||||||||| ||||    
T  34396000 atttataaaggataaatgatatttgtacatctattttatgacaacttttgaacaactttctc 34395939  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 39380887 - 39380839
Alignment:
Q  194 aaatgatatttatacaactactctatgacaacttttgaacaactatctc 242  Q
    |||||||||||||||||| | | |||||||||||||  |||||||||||    
T  39380887 aaatgatatttatacaaccattttatgacaacttttttacaactatctc 39380839  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 440721 - 440769
Alignment:
Q  194 aaatgatatttatacaactactctatgacaacttttgaacaactatctc 242  Q
    ||||||||||| |||||||||| |||||||||||||  |||||| ||||    
T  440721 aaatgatatttgtacaactactttatgacaacttttagacaactttctc 440769  T

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