View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5215_high_10 (Length: 250)

Name: NF5215_high_10
Description: NF5215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5215_high_10
NF5215_high_10
[»] scaffold0393 (1 HSPs)
scaffold0393 (1-237)||(12320-12556)
[»] chr3 (16 HSPs)
chr3 (1-154)||(2410026-2410179)
chr3 (53-180)||(52925681-52925807)
chr3 (56-164)||(3845198-3845305)
chr3 (116-193)||(35132330-35132406)
chr3 (115-191)||(41115422-41115497)
chr3 (55-181)||(39256566-39256691)
chr3 (115-184)||(33548193-33548262)
chr3 (115-191)||(43987611-43987687)
chr3 (122-190)||(48411007-48411075)
chr3 (145-232)||(4194008-4194094)
chr3 (119-170)||(54596772-54596823)
chr3 (113-179)||(38626642-38626707)
chr3 (140-184)||(7717388-7717431)
chr3 (115-183)||(35284254-35284322)
chr3 (115-154)||(21513425-21513464)
chr3 (124-181)||(1114654-1114711)
[»] chr6 (16 HSPs)
chr6 (55-191)||(29240511-29240646)
chr6 (53-184)||(6544565-6544695)
chr6 (115-191)||(33141766-33141842)
chr6 (119-184)||(5724697-5724761)
chr6 (71-173)||(34620793-34620894)
chr6 (71-173)||(34748230-34748331)
chr6 (116-181)||(2234283-2234348)
chr6 (118-182)||(26550631-26550695)
chr6 (115-182)||(33997148-33997215)
chr6 (115-169)||(26550469-26550523)
chr6 (54-163)||(33136570-33136677)
chr6 (121-173)||(2008579-2008631)
chr6 (121-181)||(13687547-13687607)
chr6 (142-182)||(24974192-24974232)
chr6 (115-191)||(26280555-26280630)
chr6 (137-181)||(32943723-32943767)
[»] chr7 (12 HSPs)
chr7 (115-216)||(45369112-45369213)
chr7 (60-158)||(48290287-48290384)
chr7 (115-190)||(21436060-21436135)
chr7 (115-194)||(45004970-45005048)
chr7 (135-181)||(40422762-40422808)
chr7 (115-158)||(12306684-12306727)
chr7 (115-161)||(29829445-29829491)
chr7 (52-83)||(33504568-33504599)
chr7 (117-191)||(7087351-7087425)
chr7 (115-161)||(12306927-12306973)
chr7 (176-217)||(3141112-3141153)
chr7 (140-217)||(5489880-5489956)
[»] chr5 (19 HSPs)
chr5 (61-181)||(10898619-10898738)
chr5 (53-184)||(29922783-29922913)
chr5 (114-182)||(29922575-29922643)
chr5 (115-160)||(38045399-38045444)
chr5 (115-194)||(33608452-33608532)
chr5 (142-195)||(7667586-7667639)
chr5 (118-190)||(10161779-10161851)
chr5 (115-203)||(13224666-13224753)
chr5 (115-217)||(1105389-1105492)
chr5 (117-187)||(11132849-11132919)
chr5 (142-184)||(42439684-42439726)
chr5 (115-191)||(12208901-12208978)
chr5 (113-175)||(9952693-9952755)
chr5 (119-173)||(27374368-27374422)
chr5 (134-191)||(7668083-7668139)
chr5 (117-161)||(11134290-11134334)
chr5 (115-191)||(35439065-35439141)
chr5 (145-177)||(37121565-37121597)
chr5 (161-237)||(38822278-38822354)
[»] chr8 (14 HSPs)
chr8 (115-195)||(40881049-40881129)
chr8 (115-212)||(11038132-11038229)
chr8 (55-163)||(41614735-41614842)
chr8 (115-190)||(5997343-5997418)
chr8 (58-195)||(32056259-32056394)
chr8 (55-186)||(35495151-35495280)
chr8 (115-161)||(29979506-29979552)
chr8 (115-195)||(8252747-8252827)
chr8 (115-191)||(13929765-13929842)
chr8 (117-158)||(36447962-36448003)
chr8 (116-163)||(38386309-38386356)
chr8 (115-164)||(34469252-34469301)
chr8 (115-156)||(38524107-38524147)
chr8 (115-184)||(39648406-39648475)
[»] chr4 (27 HSPs)
chr4 (115-181)||(25318997-25319063)
chr4 (52-184)||(29468698-29468829)
chr4 (116-192)||(2171738-2171814)
chr4 (55-170)||(2635054-2635168)
chr4 (63-217)||(8330013-8330167)
chr4 (135-191)||(18597009-18597065)
chr4 (115-175)||(33560646-33560706)
chr4 (119-194)||(9082879-9082953)
chr4 (121-195)||(2206399-2206473)
chr4 (55-105)||(47596440-47596490)
chr4 (147-184)||(11271604-11271641)
chr4 (140-217)||(26617443-26617519)
chr4 (120-184)||(54705457-54705521)
chr4 (116-179)||(471938-472001)
chr4 (123-182)||(1455633-1455692)
chr4 (140-191)||(32818430-32818480)
chr4 (145-184)||(52063117-52063156)
chr4 (145-191)||(44845726-44845772)
chr4 (115-217)||(51093208-51093309)
chr4 (119-156)||(22250180-22250217)
chr4 (115-184)||(22683813-22683882)
chr4 (55-130)||(50375572-50375644)
chr4 (122-178)||(4451413-4451469)
chr4 (115-191)||(9134560-9134635)
chr4 (150-190)||(26617193-26617233)
chr4 (115-183)||(35995178-35995246)
chr4 (121-161)||(49138851-49138891)
[»] chr2 (21 HSPs)
chr2 (116-194)||(11510904-11510982)
chr2 (88-190)||(33502909-33503010)
chr2 (56-191)||(37561599-37561732)
chr2 (115-191)||(4908739-4908815)
chr2 (115-190)||(36987172-36987247)
chr2 (115-176)||(7630366-7630427)
chr2 (125-245)||(38129472-38129591)
chr2 (151-237)||(5977166-5977253)
chr2 (126-180)||(14110638-14110692)
chr2 (86-195)||(44439172-44439283)
chr2 (135-184)||(3476496-3476545)
chr2 (108-192)||(1101946-1102030)
chr2 (113-184)||(680344-680414)
chr2 (115-154)||(39702528-39702567)
chr2 (59-152)||(9943318-9943410)
chr2 (53-130)||(42982443-42982519)
chr2 (140-184)||(2002762-2002805)
chr2 (140-184)||(7629845-7629889)
chr2 (141-173)||(33502223-33502255)
chr2 (140-184)||(36979122-36979166)
chr2 (129-217)||(40959682-40959770)
[»] chr1 (14 HSPs)
chr1 (119-217)||(48635225-48635322)
chr1 (115-184)||(32088640-32088708)
chr1 (113-195)||(51158469-51158551)
chr1 (57-184)||(6021695-6021822)
chr1 (115-189)||(15452436-15452510)
chr1 (60-194)||(41516883-41517016)
chr1 (119-170)||(646134-646185)
chr1 (115-154)||(18325187-18325226)
chr1 (56-107)||(20721057-20721108)
chr1 (117-183)||(404121-404187)
chr1 (141-191)||(5268194-5268244)
chr1 (142-184)||(5407777-5407819)
chr1 (134-184)||(52013545-52013594)
chr1 (115-199)||(12655194-12655278)
[»] scaffold0168 (1 HSPs)
scaffold0168 (56-184)||(31718-31844)


Alignment Details
Target: scaffold0393 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 12556 - 12320
Alignment:
Q  1 aacaggacactaacatgtaaacgcagacacaaatttgagaaaatgaaagtgattagtgtatgtttgatttcacttttggaggaatcaaaattgtttctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||    
T  12556 aacaggacactaacatgtaaacgcagacacaaatttgagaaaatgaaagtgattactttatgtttgatttcacttttggaggagtcaaaattgtttctaa 12457  T
Q  101 aggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagcattta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12456 aggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagcattta 12357  T
Q  201 cctatataattgattttccgcctctaatttattgttc 237  Q
    |||||||||||||  ||||||||||||||||||||||    
T  12356 cctatataattgacgttccgcctctaatttattgttc 12320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 2410179 - 2410026
Alignment:
Q  1 aacaggacactaacatgtaaacgcagacacaaatttgagaaaatgaaagtgattagtgtatgtttgatttcacttttggaggaatcaaaattgtttctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  2410179 aacaggacactaacatgtaaacgcagacacaaatttgagaaaatgaaagtgattagtgtatgtttgatttcacttttggtggagtcaaaattgtttctaa 2410080  T
Q  101 aggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgatttt 154  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2410079 aggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatttt 2410026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 52925807 - 52925681
Alignment:
Q  53 ttagtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgatt 152  Q
    |||||||||||| | || ||||||||||||| ||||||||| ||||| ||||||| ||  | |||||||||||||||| || ||||| |||||||  |||    
T  52925807 ttagtgtatgttcggttccacttttggaggagtcaaaattgattctagaggtgtataat-tgattttgacatgtttggttgctctcacgtagaatcaatt 52925709  T
Q  153 ttgcctccagaaatgattctaacttgaa 180  Q
    ||||||||| || |||||||||||||||    
T  52925708 ttgcctccataactgattctaacttgaa 52925681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 56 - 164
Target Start/End: Complemental strand, 3845305 - 3845198
Alignment:
Q  56 gtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgattttg 155  Q
    ||||||||||| || ||||||||||| || |||||||| ||||| ||||||| ||  | |||||||||||||||  || |||||||||||||||||| ||    
T  3845305 gtgtatgtttggttccacttttggagtaaccaaaattgattctagaggtgtagaat-tgattttgacatgtttgtttgatctcaagtagaattgattctg 3845207  T
Q  156 cctccagaa 164  Q
    |||| ||||    
T  3845206 cctctagaa 3845198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 193
Target Start/End: Complemental strand, 35132406 - 35132330
Alignment:
Q  116 ttttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttgga 193  Q
    |||||||||||||||||||| |||| |||||||||||||  ||| ||||| ||||||  |||||||||||||||||||    
T  35132406 ttttgacatgtttggatgttatcaattagaattgattttttctcgagaaa-gattcttgcttgaagctacaatttgga 35132330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 41115497 - 41115422
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttg 191  Q
    ||||||||||||||||||||| | |||||||||||||||||| |  |||| ||||||| ||||||||||| ||||||    
T  41115497 attttgacatgtttggatgttttaaagtagaattgattttgcttgtagaattgattct-acttgaagctagaatttg 41115422  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 181
Target Start/End: Original strand, 39256566 - 39256691
Alignment:
Q  55 agtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgatttt 154  Q
    ||||| |||||| || ||||||||||| ||||||||||  ||||| ||||||| ||  | |||||||||||||||  |  |||||||||||||||| |||    
T  39256566 agtgtgtgtttggttccacttttggagaaatcaaaattagttctagaggtgtagaat-tgattttgacatgtttgattactctcaagtagaattgacttt 39256664  T
Q  155 gcctccagaaatgattctaacttgaag 181  Q
    | ||||| || || |||| ||||||||    
T  39256665 gactccaaaattgtttctgacttgaag 39256691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 33548193 - 33548262
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagcta 184  Q
    ||||||||||||||||||| | | |||||||||||||||| ||| || ||  ||||||||||||||||||    
T  33548193 attttgacatgtttggatgctattaagtagaattgatttttccttcaaaatggattctaacttgaagcta 33548262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 43987687 - 43987611
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttg 191  Q
    |||||||||||||||||||||||  |||| ||||||||||| || |||||   ||||||||| ||||||| ||||||    
T  43987687 attttgacatgtttggatgttcttgagtacaattgattttgtctacagaatcaattctaactggaagctagaatttg 43987611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 48411007 - 48411075
Alignment:
Q  122 catgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaattt 190  Q
    |||||||| |||||||| |||||| || |||||||||| |||| |||||||||||||||| || |||||    
T  48411007 catgtttgaatgttctcgagtagatttaattttgcctctagaattgattctaacttgaagttaaaattt 48411075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 4194094 - 4194008
Alignment:
Q  145 aattgattttgcctccagaaatgattctaacttgaagctacaatttggagcatttacctatataattgattttccgcctctaatttat 232  Q
    ||||||||| |||||||||| |||||||||||| |||||| |||||| ||  ||| ||| || ||||||||||  |||||||||||||    
T  4194094 aattgatttggcctccagaattgattctaactt-aagctagaatttgaagtgtttgcctctacaattgatttttagcctctaatttat 4194008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 54596772 - 54596823
Alignment:
Q  119 tgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgatt 170  Q
    |||||||||||| |||| |||||||||||||||| |||||||| ||||||||    
T  54596772 tgacatgtttggttgttttcaagtagaattgattctgcctccaaaaatgatt 54596823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 179
Target Start/End: Original strand, 38626642 - 38626707
Alignment:
Q  113 ttattttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttga 179  Q
    ||||||||||||||||||||||| || |||| |||||||||||||||  ||| ||||| ||||||||    
T  38626642 ttattttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataacttga 38626707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 7717431 - 7717388
Alignment:
Q  140 agtagaattgattttgcctccagaaatgattctaacttgaagcta 184  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  7717431 agtagaattgattttgcctccagaattgattct-acttgaagcta 7717388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 35284254 - 35284322
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagct 183  Q
    |||||||||| |||| |||||||  | || ||||| ||||||||||| ||| |||||||||||||||||    
T  35284254 attttgacatatttgtatgttcttgattataattgcttttgcctccaaaaaagattctaacttgaagct 35284322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 154
Target Start/End: Complemental strand, 21513464 - 21513425
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgatttt 154  Q
    ||||| ||||| ||||||||||||||||||||||||||||    
T  21513464 attttaacatgcttggatgttctcaagtagaattgatttt 21513425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 1114654 - 1114711
Alignment:
Q  124 tgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaag 181  Q
    |||||||||||| || || |||||||||||||||| |  || ||||||||||||||||    
T  1114654 tgtttggatgttttctagcagaattgattttgccttcgaaattgattctaacttgaag 1114711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 55 - 191
Target Start/End: Complemental strand, 29240646 - 29240511
Alignment:
Q  55 agtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgatttt 154  Q
    |||||||||||| || ||||||||| ||||||||||||| ||||| ||||||||||  | ||||||||||||| |||| || ||||||||||||||||||    
T  29240646 agtgtatgtttggttccacttttgggggaatcaaaattgattctagaggtgtaaaat-tgattttgacatgttaggatattttcaagtagaattgatttt 29240548  T
Q  155 gcctccagaaatgattctaacttgaagctacaatttg 191  Q
     ||||||||  ||||||||||||||||||| ||||||    
T  29240547 acctccagagttgattctaacttgaagctaaaatttg 29240511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 53 - 184
Target Start/End: Complemental strand, 6544695 - 6544565
Alignment:
Q  53 ttagtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgatt 152  Q
    |||||| ||||||| |||||| |||||||||   ||||||| ||||| ||||||||||  ||||||||||| | ||  ||||| ||||||| ||||||||    
T  6544695 ttagtgaatgtttggtttcacatttggaggaggaaaaattgattctataggtgtaaaat-ttattttgacaagctttaatgttttcaagtaaaattgatt 6544597  T
Q  153 ttgcctccagaaatgattctaacttgaagcta 184  Q
    |||||| ||||| |||||||||||||||||||    
T  6544596 ttgccttcagaattgattctaacttgaagcta 6544565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 33141842 - 33141766
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttg 191  Q
    ||||||| |||||||| || ||||||||| |||||||||| ||||||||| ||||||||||| ||| ||| ||||||    
T  33141842 attttgatatgtttggttgctctcaagtataattgattttacctccagaattgattctaactagaacctagaatttg 33141766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 5724761 - 5724697
Alignment:
Q  119 tgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagcta 184  Q
    ||||||||||||||| | ||| ||||||||||||||||||||| || ||||||| |||||||||||    
T  5724761 tgacatgtttggatgctttcaggtagaattgattttgcctccaaaattgattct-acttgaagcta 5724697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 34620793 - 34620894
Alignment:
Q  71 cacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgatt 170  Q
    |||||||||||||  |||||||| |||||||||||| | || | |||||||||||||||| |  | | || ||||||| ||||||||||| ||| |||||    
T  34620793 cacttttggaggacccaaaattgattctaaaggtgt-agaattgattttgacatgtttggttcctataaactagaattaattttgcctccggaattgatt 34620891  T
Q  171 cta 173  Q
    |||    
T  34620892 cta 34620894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 34748230 - 34748331
Alignment:
Q  71 cacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgatt 170  Q
    |||||||||||||  |||||||| |||||||||||| | || | |||||||||||||||| |  | | || ||||||| ||||||||||| ||| |||||    
T  34748230 cacttttggaggacccaaaattgattctaaaggtgt-agaattgattttgacatgtttggttcctataaactagaattaattttgcctccggaattgatt 34748328  T
Q  171 cta 173  Q
    |||    
T  34748329 cta 34748331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 2234348 - 2234283
Alignment:
Q  116 ttttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaag 181  Q
    |||||| |||||||| || |||  ||||||||||||||||||||| ||| |||||||||| |||||    
T  2234348 ttttgatatgtttggttgctcttgagtagaattgattttgcctcctgaattgattctaacatgaag 2234283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 182
Target Start/End: Original strand, 26550631 - 26550695
Alignment:
Q  118 ttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagc 182  Q
    ||||||||||||| ||| ||||| |||||||||||||| ||| |||| ||||| || ||||||||    
T  26550631 ttgacatgtttggttgtactcaactagaattgattttgtctctagaattgattttatcttgaagc 26550695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 182
Target Start/End: Original strand, 33997148 - 33997215
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagc 182  Q
    |||||||||||||||| |  ||||||| |  ||||||||||||| || || |||||||||||||||||    
T  33997148 attttgacatgtttggtttctctcaagcattattgattttgccttcacaattgattctaacttgaagc 33997215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 26550469 - 26550523
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgat 169  Q
    |||||||||||||||| ||| ||||| |||||||||||||| ||| |||| ||||    
T  26550469 attttgacatgtttggttgtactcaactagaattgattttgtctctagaattgat 26550523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 163
Target Start/End: Complemental strand, 33136677 - 33136570
Alignment:
Q  54 tagtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgattt 153  Q
    |||||||| |||| |||||||||||||  |  |||||||  ||||| ||||||| ||  | |||||||||||||||| || |||| |||| |||||||||    
T  33136677 tagtgtatatttggtttcacttttggaa-agccaaaattaattctagaggtgtataat-tgattttgacatgtttggttgctctcgagtataattgattt 33136580  T
Q  154 tgcctccaga 163  Q
    | ||||||||    
T  33136579 tacctccaga 33136570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 2008631 - 2008579
Alignment:
Q  121 acatgtttggatgttctcaagtagaattgattttgcctccagaaatgattcta 173  Q
    |||||||||| || | || ||||||||||||||||||||||||| | ||||||    
T  2008631 acatgtttggttgctttctagtagaattgattttgcctccagaattaattcta 2008579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 13687547 - 13687607
Alignment:
Q  121 acatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaag 181  Q
    |||||||| ||||||||| |||||||| || ||||||| ||  | ||||||||||||||||    
T  13687547 acatgtttagatgttctcgagtagaatagaatttgccttcatgattgattctaacttgaag 13687607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 24974192 - 24974232
Alignment:
Q  142 tagaattgattttgcctccagaaatgattctaacttgaagc 182  Q
    |||||||||||||||||||| || |||||||||| ||||||    
T  24974192 tagaattgattttgcctccaaaattgattctaacatgaagc 24974232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 26280555 - 26280630
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttg 191  Q
    |||||||||||||||  |||| |   ||||||||||||||||||| |||| ||||||  ||||||||||| ||||||    
T  26280555 attttgacatgtttgattgttttttggtagaattgattttgcctcaagaattgattc-cacttgaagctagaatttg 26280630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 32943767 - 32943723
Alignment:
Q  137 tcaagtagaattgattttgcctccagaaatgattctaacttgaag 181  Q
    ||||||||||||| ||||||||| ||||  |||||||||||||||    
T  32943767 tcaagtagaattgcttttgcctctagaatcgattctaacttgaag 32943723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 115 - 216
Target Start/End: Original strand, 45369112 - 45369213
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagcatttacctatataattgat 214  Q
    ||||||| |||||||||||||||||||||||||||||||||| || |||| ||||| ||||||||||||| |||| ||||| ||| ||| || |||||||    
T  45369112 attttgagatgtttggatgttctcaagtagaattgattttgcttctagaattgattttaacttgaagctagaattcggagcttttgcctctaaaattgat 45369211  T
Q  215 tt 216  Q
    ||    
T  45369212 tt 45369213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 158
Target Start/End: Original strand, 48290287 - 48290384
Alignment:
Q  60 atgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgattttgcct 158  Q
    ||||||||||||||||||||||||  |||||||| ||  | |||| |  ||| | ||||||||||||||||||||| ||||| ||||||||||||||||    
T  48290287 atgtttgatttcacttttggaggatacaaaattgatttcataggt-tggaaattgattttgacatgtttggatgttttcaagcagaattgattttgcct 48290384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 21436135 - 21436060
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaattt 190  Q
    ||||||||||||||  |||||||| ||||||||| ||||| |||| |||| ||||| ||||||||||||| |||||    
T  21436135 attttgacatgttttaatgttctcgagtagaatttattttacctcgagaattgattttaacttgaagctagaattt 21436060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 45004970 - 45005048
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggag 194  Q
    |||||||||||||||| || |||| | ||||||||||||||||| ||||| ||||||| ||||||||||| || ||||||    
T  45004970 attttgacatgtttggttgctctcgaatagaattgattttgccttcagaattgattct-acttgaagctaaaaattggag 45005048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 40422762 - 40422808
Alignment:
Q  135 tctcaagtagaattgattttgcctccagaaatgattctaacttgaag 181  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||    
T  40422762 tctcaagtagaattgattttgcctcaagaattgattctaacttgaag 40422808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 158
Target Start/End: Original strand, 12306684 - 12306727
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcct 158  Q
    |||||||||||||||| || ||||||||||||||||||||||||    
T  12306684 attttgacatgtttggttgctctcaagtagaattgattttgcct 12306727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 29829491 - 29829445
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctcca 161  Q
    |||||| |||| ||||||| |||||||||||||||||||||||||||    
T  29829491 attttgtcatgcttggatgctctcaagtagaattgattttgcctcca 29829445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 83
Target Start/End: Complemental strand, 33504599 - 33504568
Alignment:
Q  52 attagtgtatgtttgatttcacttttggagga 83  Q
    ||||||||||||||||||||||||||||||||    
T  33504599 attagtgtatgtttgatttcacttttggagga 33504568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 7087425 - 7087351
Alignment:
Q  117 tttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttg 191  Q
    ||||||||||||| ||||| || ||||||||||||||||  |  |||| || || ||||||||||||| ||||||    
T  7087425 tttgacatgtttgaatgttttcgagtagaattgattttgtttttagaattggttttaacttgaagctagaatttg 7087351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 12306927 - 12306973
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctcca 161  Q
    |||||||||||||||| || |||  ||||||||||||||||||||||    
T  12306927 attttgacatgtttggttgctcttgagtagaattgattttgcctcca 12306973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 3141153 - 3141112
Alignment:
Q  176 ttgaagctacaatttggagcatttacctatataattgatttt 217  Q
    ||||||||| |||||||||| ||||||| |||||||||||||    
T  3141153 ttgaagctaaaatttggagcttttacctgtataattgatttt 3141112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 5489956 - 5489880
Alignment:
Q  140 agtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagcatttacctatataattgatttt 217  Q
    ||||||||| |||||||||||| || ||||||| |||||| |||| || ||||||| |||   |||||||||||||||    
T  5489956 agtagaattaattttgcctccaaaattgattct-acttgatgctagaaattggagcttttgattatataattgatttt 5489880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 61 - 181
Target Start/End: Original strand, 10898619 - 10898738
Alignment:
Q  61 tgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgattttgcctcc 160  Q
    |||| |||||||||||||||||||||||||||| ||||| || |||  ||  | |||||||||||||||| || |||| |||| |||||||||||||||     
T  10898619 tgttcgatttcacttttggaggaatcaaaattgattctagagctgtcgaat-taattttgacatgtttggttgctctcgagtaaaattgattttgcctct 10898717  T
Q  161 agaaatgattctaacttgaag 181  Q
    |||| ||||||||||||||||    
T  10898718 agaattgattctaacttgaag 10898738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 184
Target Start/End: Original strand, 29922783 - 29922913
Alignment:
Q  53 ttagtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgatt 152  Q
    |||||||||||||  || ||||||| ||||| ||||||||| |||||   ||||| ||  | |||||||||||||||| ||||||| || ||||||||||    
T  29922783 ttagtgtatgtttacttccactttttgaggagtcaaaattgattctagtagtgtagaat-tgattttgacatgtttggttgttctcgagcagaattgatt 29922881  T
Q  153 ttgcctccagaaatgattctaacttgaagcta 184  Q
    ||| ||| |||| ||||| |||||||||||||    
T  29922882 ttgtctcaagaattgattttaacttgaagcta 29922913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 29922575 - 29922643
Alignment:
Q  114 tattttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagc 182  Q
    ||||||||||||||||  ||||||| |||||||||||||||||||| |||| ||||| |||||||||||    
T  29922575 tattttgacatgtttgattgttctctagtagaattgattttgcctcaagaattgattttaacttgaagc 29922643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 38045399 - 38045444
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctcc 160  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  38045399 attttgacatgtttgaatgttctcaagtagaattgattttgcctcc 38045444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 33608452 - 33608532
Alignment:
Q  115 attttgacatgtttggatgttctcaa-gtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggag 194  Q
    |||||||||||||||| || |||||| ||||||||| ||||||||  |||| ||||||||||||||||||| || ||||||    
T  33608452 attttgacatgtttggttggtctcaaagtagaattggttttgccttgagaattgattctaacttgaagctagaagttggag 33608532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 7667586 - 7667639
Alignment:
Q  142 tagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagc 195  Q
    ||||||||| ||||||| ||||| ||||||||||||||||||| ||||||||||    
T  7667586 tagaattgactttgccttcagaattgattctaacttgaagctagaatttggagc 7667639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 10161779 - 10161851
Alignment:
Q  118 ttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaattt 190  Q
    ||||||||||||  ||||||| | ||||||||| |||||||| |||| |||||||||| || |||||||||||    
T  10161779 ttgacatgtttgattgttctcgaatagaattgactttgcctctagaattgattctaacatgcagctacaattt 10161851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 13224753 - 13224666
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagcatttacct 203  Q
    |||||||||||||||||||||| | |||| |||||||||||  || | || | |||| |||||||||||| |||||||||| |||||||    
T  13224753 attttgacatgtttggatgttc-cgagtataattgattttgtttctataattcattcaaacttgaagctagaatttggagcttttacct 13224666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 1105389 - 1105492
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagcattt-acctatataattga 213  Q
    |||||||||| ||||| ||||||||||||||||||||||||| | || || ||||| ||||| |||| ||  ||||| ||| ||| || | |||||||||    
T  1105389 attttgacatttttggctgttctcaagtagaattgattttgctttcaaaattgattttaactcgaagttatgatttgtagcttttgacttctataattga 1105488  T
Q  214 tttt 217  Q
    ||||    
T  1105489 tttt 1105492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 11132919 - 11132849
Alignment:
Q  117 tttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaa 187  Q
    |||||||||||||| || |||| ||||||||| |||||| |  || || ||||||||||||||||||||||    
T  11132919 tttgacatgtttggttgctctctagtagaatttattttggcgtcaaaattgattctaacttgaagctacaa 11132849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 42439726 - 42439684
Alignment:
Q  142 tagaattgattttgcctccagaaatgattctaacttgaagcta 184  Q
    ||||||||||||| ||||||||| |||||||||||||||||||    
T  42439726 tagaattgatttttcctccagaattgattctaacttgaagcta 42439684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 12208978 - 12208901
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcc-tccagaaatgattctaacttgaagctacaatttg 191  Q
    |||||||||||||||||||||||| ||||||||||  |||||| | | ||| ||| |||||| |||||||| ||||||    
T  12208978 attttgacatgtttggatgttctcgagtagaattgtctttgccttacggaattgactctaacgtgaagctagaatttg 12208901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 9952755 - 9952693
Alignment:
Q  113 ttattttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaac 175  Q
    ||||||||||||||||| ||||||||    ||||| ||||||||||| |||| ||||||||||    
T  9952755 ttattttgacatgtttgaatgttctctgacagaatagattttgcctctagaattgattctaac 9952693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 27374422 - 27374368
Alignment:
Q  119 tgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattcta 173  Q
    |||||||||||| |||| |||||||||||| |||||||||  |||| ||||||||    
T  27374422 tgacatgtttggttgttttcaagtagaattaattttgccttaagaattgattcta 27374368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 7668083 - 7668139
Alignment:
Q  134 ttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttg 191  Q
    ||||| ||||||||||| ||||||||||| |||||||| |||||| ||||| ||||||    
T  7668083 ttctcgagtagaattgaatttgcctccag-aatgattccaacttgtagctagaatttg 7668139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 11134290 - 11134334
Alignment:
Q  117 tttgacatgtttggatgttctcaagtagaattgattttgcctcca 161  Q
    |||||||||||||||| ||||| ||||||||| ||| ||||||||    
T  11134290 tttgacatgtttggattttctcgagtagaattaattatgcctcca 11134334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 35439065 - 35439141
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttg 191  Q
    ||||| |||||||||||||| ||||||| ||||| |||| | ||| |||  | ||||||| ||||||||| ||||||    
T  35439065 attttaacatgtttggatgtcctcaagtggaatttatttcgactctagatttcattctaaattgaagctagaatttg 35439141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 37121565 - 37121597
Alignment:
Q  145 aattgattttgcctccagaaatgattctaactt 177  Q
    ||||||||||| |||||||||||||||||||||    
T  37121565 aattgattttgactccagaaatgattctaactt 37121597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 38822354 - 38822278
Alignment:
Q  161 agaaatgattctaacttgaagctacaatttggagcatttacctatataattgattttccgcctctaatttattgttc 237  Q
    |||| |||||||| |||||| ||| |||||||||  ||||||| || ||||||||||   |||| ||||||||||||    
T  38822354 agaattgattctagcttgaatctagaatttggagtttttacctttacaattgatttttaacctcaaatttattgttc 38822278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 195
Target Start/End: Original strand, 40881049 - 40881129
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagc 195  Q
    ||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||| ||| ||||| ||| |||||||    
T  40881049 attttgacatgtttgcaagttctaaagtagaattgattttgcctccagaaatgattctatcttcaagctgcaacttggagc 40881129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 115 - 212
Target Start/End: Original strand, 11038132 - 11038229
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagcatttacctatataattg 212  Q
    |||||||||||||||||||||||| | | || |||||||| ||||||||  ||||||||||||||||||| |||||||||  |||||||  |||||||    
T  11038132 attttgacatgtttggatgttctcgaatggagttgatttttcctccagagttgattctaacttgaagctaaaatttggaggttttacctccataattg 11038229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 163
Target Start/End: Original strand, 41614735 - 41614842
Alignment:
Q  55 agtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgatttt 154  Q
    |||||||||||| || || || || ||||  |||||||| ||||| |||| |||||  | |||||||| |||||||||| | ||||||||||||||||||    
T  41614735 agtgtatgtttggttccatttgtgtaggagccaaaattgattctagaggtataaaat-tgattttgacttgtttggatggtttcaagtagaattgatttt 41614833  T
Q  155 gcctccaga 163  Q
    |||||||||    
T  41614834 gcctccaga 41614842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 5997418 - 5997343
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaattt 190  Q
    ||||||||||||||||||||| |  |||| ||||||||||||||| | || |||||||||||||||| || |||||    
T  5997418 attttgacatgtttggatgtttttgagtaaaattgattttgcctctaaaagtgattctaacttgaagttagaattt 5997343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 195
Target Start/End: Original strand, 32056259 - 32056394
Alignment:
Q  58 gtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgattttgcc 157  Q
    ||||||||| ||||||||||| ||||| |||||||| ||||| | ||||| || |    ||||||| |||||| || |||  |||| |||||||||| ||    
T  32056259 gtatgtttggtttcacttttgaaggaaccaaaattgattctagatgtgtagaacaga--tttgacaagtttggttgctctatagtaaaattgattttacc 32056356  T
Q  158 tccagaaatgattctaacttgaagctacaatttggagc 195  Q
    |||| || |||||||||||| |||||| || |||||||    
T  32056357 tccataattgattctaactttaagctagaaattggagc 32056394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 186
Target Start/End: Original strand, 35495151 - 35495280
Alignment:
Q  55 agtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgatttt 154  Q
    |||||||||||| || ||||||||||| |  |||||||| ||||| | ||||| ||  | |||||||||||||| | |  ||| || ||||||| |||||    
T  35495151 agtgtatgtttggttccacttttggagcacccaaaattgattctacaagtgtagaat-tgattttgacatgttttgtttctctaaattagaattaatttt 35495249  T
Q  155 gcctccagaaatgattctaacttgaagctaca 186  Q
    ||||| |||| ||||||| |||||||||||||    
T  35495250 gcctctagaattgattct-acttgaagctaca 35495280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 29979552 - 29979506
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctcca 161  Q
    |||||||||||||||| || ||||||||||||||| |||||||||||    
T  29979552 attttgacatgtttggttggtctcaagtagaattggttttgcctcca 29979506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 195
Target Start/End: Original strand, 8252747 - 8252827
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaa-cttgaagctacaatttggagc 195  Q
    |||||||||||||||| |||| | |||||||||||||||||| || |||  | ||||||| ||| |||||||||||||||||    
T  8252747 attttgacatgtttggctgtttt-aagtagaattgattttgcttcgagagtttattctaaactttaagctacaatttggagc 8252827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 13929842 - 13929765
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcc-tccagaaatgattctaacttgaagctacaatttg 191  Q
    |||||||||||||||||||||||| ||||||||||  |||||| | | ||| ||| |||||| |||||||| ||||||    
T  13929842 attttgacatgtttggatgttctcgagtagaattgtctttgccttacggaattgactctaacgtgaagctagaatttg 13929765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 36448003 - 36447962
Alignment:
Q  117 tttgacatgtttggatgttctcaagtagaattgattttgcct 158  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  36448003 tttgacatgtttggatgttctcgggtagaattgattttgcct 36447962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 38386309 - 38386356
Alignment:
Q  116 ttttgacatgtttggatgttctcaagtagaattgattttgcctccaga 163  Q
    |||||||||||||| |||||||| | || |||||||||||||||||||    
T  38386309 ttttgacatgtttgaatgttctcgaataaaattgattttgcctccaga 38386356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 34469252 - 34469301
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaa 164  Q
    |||||||||||||| |||||||||||||| |||| |||||| || |||||    
T  34469252 attttgacatgttttgatgttctcaagtataattaattttgacttcagaa 34469301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 156
Target Start/End: Complemental strand, 38524147 - 38524107
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgc 156  Q
    ||||||||||||||||| ||||||||||| ||||||||||||    
T  38524147 attttgacatgtttgga-gttctcaagtaaaattgattttgc 38524107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 184
Target Start/End: Complemental strand, 39648475 - 39648406
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagcta 184  Q
    ||||||||| |||||||||  |||||  ||||||||||||  ||| |||| |||||||||||| ||||||    
T  39648475 attttgacaagtttggatgccctcaatcagaattgattttctctctagaactgattctaactttaagcta 39648406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 115 - 181
Target Start/End: Original strand, 25318997 - 25319063
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaag 181  Q
    |||||||||||||||| || |||| |||||||||||||||| |||||||| ||||||||||||||||    
T  25318997 attttgacatgtttggttgctctcgagtagaattgattttgtctccagaattgattctaacttgaag 25319063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 184
Target Start/End: Complemental strand, 29468829 - 29468698
Alignment:
Q  52 attagtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattatt-ttgacatgtttggatgttctcaagtagaattga 150  Q
    |||||||||||||| |||  ||| |||||||||  ||||||| || || ||||||| ||  ||| | |||||||||||||||||||||||||||||  ||    
T  29468829 attagtgtatgtttaattcgactcttggaggaagaaaaattgattttacaggtgtagaa--ttagtattgacatgtttggatgttctcaagtagaaccga 29468732  T
Q  151 ttttgcctccagaaatgattctaacttgaagcta 184  Q
    |||||| |||| || |||||||| ||||||||||    
T  29468731 ttttgcatccataattgattctatcttgaagcta 29468698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 2171738 - 2171814
Alignment:
Q  116 ttttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttgg 192  Q
    ||||||||||||||||||||||| |||| |||||| |||||| || ||| |||||| |||||||||||| |||||||    
T  2171738 ttttgacatgtttggatgttctcgagtaaaattgactttgcccccggaattgattcgaacttgaagctagaatttgg 2171814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 170
Target Start/End: Original strand, 2635054 - 2635168
Alignment:
Q  55 agtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgatttt 154  Q
    |||||||||||| |||||||||| |||| | |||||||| ||||| | |||| |||| | |||||||||||||||  || | | |||||||| |||||||    
T  2635054 agtgtatgtttggtttcacttttagagggaccaaaattgattctagaagtgt-aaaattgattttgacatgtttgattgcttttaagtagaactgatttt 2635152  T
Q  155 gcctccagaaatgatt 170  Q
    |||||||||| |||||    
T  2635153 gcctccagaattgatt 2635168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 217
Target Start/End: Original strand, 8330013 - 8330167
Alignment:
Q  63 tttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaatta--ttttgacatgtttggatgttctcaagtagaattgattttgcctcc 160  Q
    |||| |||||||| |||||||  || ||||| ||||| |||||  || |||||  |||| |||||||||| || ||||||||| |||||||| |||||||    
T  8330013 tttggtttcacttctggaggagccagaattgattctagaggtg--aataattaattttttacatgtttggttgctctcaagtaaaattgattctgcctcc 8330110  T
Q  161 agaaatgattctaacttgaagctacaatttggagcatttacctatataattgatttt 217  Q
    | ||  |||||||||||||||||| || ||||||| |||   | |||||||||||||    
T  8330111 ataatggattctaacttgaagctagaaattggagcttttgattctataattgatttt 8330167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 18597009 - 18597065
Alignment:
Q  135 tctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttg 191  Q
    ||||||||| |||||||||| ||||||||| ||||||||||||||||||| ||||||    
T  18597009 tctcaagtaaaattgattttacctccagaattgattctaacttgaagctataatttg 18597065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 33560706 - 33560646
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaac 175  Q
    |||||||||||||||| || |||| |||||||||||||||||||| |||| ||||||||||    
T  33560706 attttgacatgtttggttgctctcgagtagaattgattttgcctctagaattgattctaac 33560646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 194
Target Start/End: Complemental strand, 9082953 - 9082879
Alignment:
Q  119 tgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggag 194  Q
    ||||||||||||||||||| || |||||||||||||||| || ||| |||||||||||||||  || |||||||||    
T  9082953 tgacatgtttggatgttctgaaatagaattgattttgcc-cctgaattgattctaacttgaacttagaatttggag 9082879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 195
Target Start/End: Complemental strand, 2206473 - 2206399
Alignment:
Q  121 acatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagc 195  Q
    ||||||||| |||||||  || |||||||||||| |||||| || |||||||| |||||||||| || |||||||    
T  2206473 acatgtttgaatgttctagagcagaattgatttttcctccaaaattgattctagcttgaagctaaaaattggagc 2206399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 47596490 - 47596440
Alignment:
Q  55 agtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtg 105  Q
    ||||||||| || |||||||||||||||||||||||||| || ||||||||    
T  47596490 agtgtatgtatggtttcacttttggaggaatcaaaattgattttaaaggtg 47596440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 11271641 - 11271604
Alignment:
Q  147 ttgattttgcctccagaaatgattctaacttgaagcta 184  Q
    |||||||||||||||||| |||||||||||||||||||    
T  11271641 ttgattttgcctccagaattgattctaacttgaagcta 11271604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 26617443 - 26617519
Alignment:
Q  140 agtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagcatttacctatataattgatttt 217  Q
    |||||||||||||||||||||| |||||||||| ||||||||||| ||| || ||| |||   |||| ||||||||||    
T  26617443 agtagaattgattttgcctccaaaaatgattct-acttgaagctagaatctgtagcttttgattataaaattgatttt 26617519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 54705521 - 54705457
Alignment:
Q  120 gacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagcta 184  Q
    ||||||||||| || || |||||| ||||||||||||||| | || |||| ||||||||||||||    
T  54705521 gacatgtttggttgctcacaagtataattgattttgcctcaataattgatactaacttgaagcta 54705457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 472001 - 471938
Alignment:
Q  116 ttttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttga 179  Q
    |||||||||||||| ||||| || ||||||||||||||| ||||   || ||||||||||||||    
T  472001 ttttgacatgtttgaatgttgtcgagtagaattgattttacctctgcaactgattctaacttga 471938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 1455692 - 1455633
Alignment:
Q  123 atgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagc 182  Q
    ||||||||||||| |||||||||| |||||||||||||| || ||||   ||||||||||    
T  1455692 atgtttggatgttttcaagtagaactgattttgcctccaaaattgatataaacttgaagc 1455633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 32818480 - 32818430
Alignment:
Q  140 agtagaattgattttgcctccagaaatgattctaacttgaagctacaatttg 191  Q
    ||||||||||||||||||||||||| ||||||| | ||||||||| ||||||    
T  32818480 agtagaattgattttgcctccagaattgattct-atttgaagctagaatttg 32818430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 184
Target Start/End: Complemental strand, 52063156 - 52063117
Alignment:
Q  145 aattgattttgcctccagaaatgattctaacttgaagcta 184  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  52063156 aattgattttgcctatagaaatgattctaacttgaagcta 52063117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 44845726 - 44845772
Alignment:
Q  145 aattgattttgcctccagaaatgattctaacttgaagctacaatttg 191  Q
    |||||||||| ||||||||| ||||||||||||||||| | ||||||    
T  44845726 aattgatttttcctccagaattgattctaacttgaagcaataatttg 44845772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 51093208 - 51093309
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagcatttacctatataattgat 214  Q
    |||||||||||||| || |||||    || |||| |||||||||| | || |||||||||| |||||||| |||||||||| ||| ||| || |||||||    
T  51093208 attttgacatgttttgacgttcttgcataaaatttattttgcctctataattgattctaac-tgaagctagaatttggagcttttgcctctacaattgat 51093306  T
Q  215 ttt 217  Q
    |||    
T  51093307 ttt 51093309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 22250180 - 22250217
Alignment:
Q  119 tgacatgtttggatgttctcaagtagaattgattttgc 156  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  22250180 tgacatgtttggttgttctcaattagaattgattttgc 22250217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 22683813 - 22683882
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagcta 184  Q
    ||||||||||||| |  |||| |  |||| |||||||||||||||||||| | ||| |||||||||||||    
T  22683813 attttgacatgttggtttgtttttgagtaaaattgattttgcctccagaattaattataacttgaagcta 22683882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 130
Target Start/End: Complemental strand, 50375644 - 50375572
Alignment:
Q  55 agtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttgg 130  Q
    |||||||||||||||  ||||||||| || ||||||||| || || ||||||| ||   |||||||||||||||||    
T  50375644 agtgtatgtttgattctacttttggatgagtcaaaattgattttagaggtgtataa---tattttgacatgtttgg 50375572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 4451413 - 4451469
Alignment:
Q  122 catgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttg 178  Q
    ||||||||||| ||||| |||||| ||| ||||| |||| ||||| |||||||||||    
T  4451413 catgtttggatattctcgagtagacttgcttttgactccggaaataattctaacttg 4451469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 9134560 - 9134635
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttg 191  Q
    |||||||||||||| | |||| || ||| ||||||||||| | ||||||| |||| || ||||||||||| ||||||    
T  9134560 attttgacatgtttagttgttatcgagtggaattgattttacttccagaattgatcct-acttgaagctaaaatttg 9134635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 26617193 - 26617233
Alignment:
Q  150 attttgcctccagaaatgattctaacttgaagctacaattt 190  Q
    |||||||||||| || ||||||||||||||| |||||||||    
T  26617193 attttgcctccaaaattgattctaacttgaaactacaattt 26617233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 35995178 - 35995246
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagct 183  Q
    |||||||||| |  ||||| | || |||| |||||||||| ||| ||||| ||||||||||||||||||    
T  35995178 attttgacatatgaggatgatttctagtataattgattttaccttcagaactgattctaacttgaagct 35995246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 49138891 - 49138851
Alignment:
Q  121 acatgtttggatgttctcaagtagaattgattttgcctcca 161  Q
    |||||||||| |||| ||||||| |||||||||||||||||    
T  49138891 acatgtttggttgttttcaagtaaaattgattttgcctcca 49138851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 11510904 - 11510982
Alignment:
Q  116 ttttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggag 194  Q
    |||||| ||||||||||||| || |||||||||||||||||||||| |  |||||||| |||||||||| |||||||||    
T  11510904 ttttgatatgtttggatgttttcgagtagaattgattttgcctccatatttgattctatcttgaagctagaatttggag 11510982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 88 - 190
Target Start/End: Complemental strand, 33503010 - 33502909
Alignment:
Q  88 aaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaa 187  Q
    |||||| |||| |||||||||||  | |||||||||||||||| || |||| |||| || ||||||||| ||||||| ||||||||||||||||||| ||    
T  33503010 aaattgattctgaaggtgtaaaat-tgattttgacatgtttggttgctctcgagtaaaactgattttgcatccagaattgattctaacttgaagctagaa 33502912  T
Q  188 ttt 190  Q
    |||    
T  33502911 ttt 33502909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 191
Target Start/End: Original strand, 37561599 - 37561732
Alignment:
Q  56 gtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgattttg 155  Q
    ||||||||||| ||||| ||||||| ||  |  ||||| ||||| ||||||||||  | ||||||||||||||| || | |||||||||| |||||||||    
T  37561599 gtgtatgtttggtttcaattttggatgaggcggaattgattctagaggtgtaaaat-tgattttgacatgtttgaat-tcctcaagtagatttgattttg 37561696  T
Q  156 cctccagaaatgattctaacttgaagctacaatttg 191  Q
    |||| | || ||||||||||||||| |||| |||||    
T  37561697 cctctataattgattctaacttgaaactacgatttg 37561732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 4908739 - 4908815
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttg 191  Q
    ||||||||||||||| ||||| || ||||||||||||||||||| | ||| | |||||||||| |||||| ||||||    
T  4908739 attttgacatgtttgtatgttttcgagtagaattgattttgccttccgaatttattctaacttaaagctaaaatttg 4908815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 36987247 - 36987172
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaattt 190  Q
    ||||||||||||||||||  | |  |||| |||||||||||| |||||||||||||||||||||||| || |||||    
T  36987247 attttgacatgtttggattcttttgagtataattgattttgcttccagaaatgattctaacttgaagttagaattt 36987172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 7630366 - 7630427
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaact 176  Q
    |||||||||||||||| || | |||||||||||||||||||||||||| |  ||||||||||    
T  7630366 attttgacatgtttggttgctttcaagtagaattgattttgcctccaggatagattctaact 7630427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 245
Target Start/End: Complemental strand, 38129591 - 38129472
Alignment:
Q  125 gtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagcatttacctatataattgattttccgcctc 224  Q
    |||||||  ||||| ||||||||| ||||||| |  |||| |||||||||||  |||||||||||| |||| ||| || ||  ||||||||||  |||||    
T  38129591 gtttggactttctcgagtagaattcattttgcttttagaattgattctaactcaaagctacaatttcgagcttttgcc-atgcaattgatttttagcctc 38129493  T
Q  225 taatttattgttcttctcact 245  Q
     |||||||||||| |||||||    
T  38129492 aaatttattgttcatctcact 38129472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 237
Target Start/End: Original strand, 5977166 - 5977253
Alignment:
Q  151 ttttgcctccagaaatgattctaacttgaagctacaatttggagc-atttacctatataattgattttccgcctctaatttattgttc 237  Q
    ||||||||||| || ||||||||||||||||||| ||||||||||  ||| ||| |||| ||||||||   |||| ||||||||||||    
T  5977166 ttttgcctccataattgattctaacttgaagctaaaatttggagctttttgcctctatatttgatttttaacctcaaatttattgttc 5977253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 14110638 - 14110692
Alignment:
Q  126 tttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaa 180  Q
    ||||||||||||||||| ||||||| |||||||  |||| |||||||||||||||    
T  14110638 tttggatgttctcaagttgaattgaatttgcctttagaattgattctaacttgaa 14110692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 195
Target Start/End: Original strand, 44439172 - 44439283
Alignment:
Q  86 caaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgattttgcctccagaaa---tgattctaacttgaagc 182  Q
    |||||||| ||||||||||||  ||  | |||||||||||||||| ||  ||| || | ||||||||||||||| ||||    |||||||||||||||||    
T  44439172 caaaattgattctaaaggtgttgaat-taattttgacatgtttggttgccctccaggaaaattgattttgcctctagaagaattgattctaacttgaagc 44439270  T
Q  183 tacaatttggagc 195  Q
    || ||||||||||    
T  44439271 taaaatttggagc 44439283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 3476545 - 3476496
Alignment:
Q  135 tctcaagtagaattgattttgcctccagaaatgattctaacttgaagcta 184  Q
    |||| |||| |||||||||||||||||||| |||||||||||| ||||||    
T  3476545 tctcgagtaaaattgattttgcctccagaattgattctaacttaaagcta 3476496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 1101946 - 1102030
Alignment:
Q  108 aaaaattattttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttgg 192  Q
    |||| ||||||||| || ||||| ||  ||| ||||||||||||||||||||| ||  |||||||||||| || ||| |||||||    
T  1101946 aaaatttattttgaaatttttggttgcactcgagtagaattgattttgcctcctgatttgattctaacttaaaactagaatttgg 1102030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 680414 - 680344
Alignment:
Q  113 ttattttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagcta 184  Q
    |||||||||||||||| | || | || | ||||| ||||||||||||||||| ||||||| |||||||||||    
T  680414 ttattttgacatgtttagttgctttcgaatagaactgattttgcctccagaattgattct-acttgaagcta 680344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 154
Target Start/End: Complemental strand, 39702567 - 39702528
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgatttt 154  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  39702567 attttgacatgtttgtatgttctcgagtagaattgatttt 39702528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 152
Target Start/End: Original strand, 9943318 - 9943410
Alignment:
Q  59 tatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgatt 152  Q
    |||||||| || ||| ||||||| || |||||||| |||| ||||||| |||| | ||||| |||||||||| || |||||  |||||||||||    
T  9943318 tatgtttggttccacatttggagcaaccaaaattgattctgaaggtgt-aaaattgattttaacatgtttggttgctctcacttagaattgatt 9943410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 42982443 - 42982519
Alignment:
Q  53 ttagtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttgg 130  Q
    |||||||||||||| || |||||||||||||||| |||||  |||||||  ||| | || | ||||||||||||||||    
T  42982443 ttagtgtatgtttggttccacttttggaggaatccaaattaattctaaacatgt-agaactgattttgacatgtttgg 42982519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 2002805 - 2002762
Alignment:
Q  140 agtagaattgattttgcctccagaaatgattctaacttgaagcta 184  Q
    ||||||||||||||||||||||||  ||||||| |||||||||||    
T  2002805 agtagaattgattttgcctccagacctgattct-acttgaagcta 2002762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 7629845 - 7629889
Alignment:
Q  140 agtagaattgattttgcctccagaaatgattctaacttgaagcta 184  Q
    ||||||||| | ||| ||||||||| |||||||||||||||||||    
T  7629845 agtagaattcacttttcctccagaattgattctaacttgaagcta 7629889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 33502223 - 33502255
Alignment:
Q  141 gtagaattgattttgcctccagaaatgattcta 173  Q
    |||||||||||||||||||||||| ||||||||    
T  33502223 gtagaattgattttgcctccagaattgattcta 33502255  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 36979122 - 36979166
Alignment:
Q  140 agtagaattgattttgcctccagaaatgattctaacttgaagcta 184  Q
    ||||||||| ||||||||| ||||| |||| ||||||||||||||    
T  36979122 agtagaatttattttgccttcagaattgatactaacttgaagcta 36979166  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 217
Target Start/End: Complemental strand, 40959770 - 40959682
Alignment:
Q  129 ggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagcatttacctatataattgatttt 217  Q
    ||||||||||  ||||||||||| | | ||| | || | |||||||||||| |||||| |||||||| |||  || |||||||||||||    
T  40959770 ggatgttctcttgtagaattgatgtagtctctaaaattaattctaacttgatgctacagtttggagcttttgtctctataattgatttt 40959682  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 217
Target Start/End: Complemental strand, 48635322 - 48635225
Alignment:
Q  119 tgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagcatttacctatataattgatttt 217  Q
    ||||||||||||||||||||||||||||||| |||||||| || || |||||||||||| |  ||| |||||| ||| |||  || |||||||||||||    
T  48635322 tgacatgtttggatgttctcaagtagaattggttttgcct-cataattgattctaacttcagcctagaatttgaagcttttgtctctataattgatttt 48635225  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 115 - 184
Target Start/End: Complemental strand, 32088708 - 32088640
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagcta 184  Q
    |||||||||||||||| || |||||||||||||||||||| ||| || || |||||||||||||||||||    
T  32088708 attttgacatgtttggttgctctcaagtagaattgatttt-cctacaaaattgattctaacttgaagcta 32088640  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 195
Target Start/End: Complemental strand, 51158551 - 51158469
Alignment:
Q  113 ttattttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagc 195  Q
    |||||||| |||||||||||||||||   ||||||||||||||||||||| | | ||| ||||||||||  | ||||||||||    
T  51158551 ttattttggcatgtttggatgttctcggatagaattgattttgcctccaggatttattttaacttgaagaaagaatttggagc 51158469  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 184
Target Start/End: Original strand, 6021695 - 6021822
Alignment:
Q  57 tgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaa-aatt-attttgacatgtttggatgttctcaagtagaattgatttt 154  Q
    |||||||||| || ||||||||||||| | ||| ||| ||||| ||||||| || |||| ||||||||| |||||  || | ||||||||||||||||||    
T  6021695 tgtatgtttggttccacttttggaggagttaaa-ttgattctagaggtgtagaataattgattttgacaagtttgattgatttcaagtagaattgatttt 6021793  T
Q  155 gcctccagaaatgattctaacttgaagcta 184  Q
    ||||| ||||  |||||| |||||||||||    
T  6021794 gcctctagaatcgattct-acttgaagcta 6021822  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 15452436 - 15452510
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatt 189  Q
    |||||||||| ||||||||||||| ||||||||||||||||  || |||| || |||||| ||||| ||| ||||    
T  15452436 attttgacatctttggatgttctcgagtagaattgattttgtatcaagaattgcttctaatttgaaactagaatt 15452510  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 194
Target Start/End: Original strand, 41516883 - 41517016
Alignment:
Q  60 atgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgattttgcctc 159  Q
    ||||||| || ||||||||||||| |||||||   ||||| ||||||| ||  | ||| |||||| || | ||||| || ||||||||||||||||| |     
T  41516883 atgtttggttccacttttggaggagtcaaaatccattctagaggtgtagaat-tgattatgacatcttggaatgttttcgagtagaattgattttgcgtt 41516981  T
Q  160 cagaaatgattctaacttgaagctacaatttggag 194  Q
     | || |||||||||||||||| || |||||||||    
T  41516982 taaaattgattctaacttgaagttagaatttggag 41517016  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 646134 - 646185
Alignment:
Q  119 tgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgatt 170  Q
    |||||||||||| |||| |  ||||||||||||||||||||||||| |||||    
T  646134 tgacatgtttggttgtttttgagtagaattgattttgcctccagaattgatt 646185  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 154
Target Start/End: Complemental strand, 18325226 - 18325187
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgatttt 154  Q
    |||||||||||||||||| ||||| |||||||||||||||    
T  18325226 attttgacatgtttggattttctcgagtagaattgatttt 18325187  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 20721108 - 20721057
Alignment:
Q  56 gtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgta 107  Q
    ||||||||||  || ||||||||||||||||||||||| ||||| |||||||    
T  20721108 gtgtatgttttgttccacttttggaggaatcaaaattgattctagaggtgta 20721057  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 404187 - 404121
Alignment:
Q  117 tttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagct 183  Q
    |||||||||||| |||||| |  ||| ||||||||||| |||| |||| ||||| ||||||||||||    
T  404187 tttgacatgtttagatgttttttagttgaattgattttacctcaagaattgattttaacttgaagct 404121  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 191
Target Start/End: Original strand, 5268194 - 5268244
Alignment:
Q  141 gtagaattgattttgcctccagaaatgattctaacttgaagctacaatttg 191  Q
    |||||||| |||||||||||| || ||||||||||| ||||||| ||||||    
T  5268194 gtagaattaattttgcctccaaaattgattctaactcgaagctagaatttg 5268244  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 5407777 - 5407819
Alignment:
Q  142 tagaattgattttgcctccagaaatgattctaacttgaagcta 184  Q
    ||||||||||||||||| |||| || |||||||||||||||||    
T  5407777 tagaattgattttgcctgcagagataattctaacttgaagcta 5407819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 52013594 - 52013545
Alignment:
Q  134 ttctcaagtagaattgattttgcctccagaaatgattctaacttgaagcta 184  Q
    ||||| |||| ||||||||||||||||| || |||||||||||||||||||    
T  52013594 ttctccagtaaaattgattttgcctcca-aattgattctaacttgaagcta 52013545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 12655194 - 12655278
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagcattt 199  Q
    |||||||||||||| | || | |  |||||| | || |||||||| |||| | ||||||||||||||||| |||||| |||||||    
T  12655194 attttgacatgtttagttgctttggagtagattcgactttgcctctagaattaattctaacttgaagctagaatttgtagcattt 12655278  T

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Target: scaffold0168 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 184
Target Start/End: Original strand, 31718 - 31844
Alignment:
Q  56 gtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgattttg 155  Q
    ||||||||||| || ||||| | |||  | |||||||| ||||| ||||||| ||  | ||| |||||||||||| |||| || |||| |||||||| ||    
T  31718 gtgtatgtttggttccacttctagagtgaccaaaattgattctagaggtgtagaat-tgattctgacatgtttggttgttgtcgagtaaaattgattctg 31816  T
Q  156 cctccagaaatgattctaacttgaagcta 184  Q
    |||||| || ||||| | |||||||||||    
T  31817 cctccaaaattgattat-acttgaagcta 31844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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