View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5215_high_15 (Length: 228)
Name: NF5215_high_15
Description: NF5215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5215_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 1506304 - 1506111
Alignment:
| Q |
20 |
gcattccattatcaaaagaacagcttcaaccgtcaaacaggacaatcttgatggtgactttaaatgttcaatgacaacttggtaattttcacttaagtca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1506304 |
gcattccattatcaaaagaacagcttcaaccgtcaaacaggacaatcttgatggtgactttaaatgttcaatgacaacttggtaattttcacttaagtca |
1506205 |
T |
|
| Q |
120 |
gctatcactcccagcaacttgagctcctctttgtaattatgtatttcctcaccataataatcattatcaatgatagggatattactaatctgtg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1506204 |
gctatcactcccagcaacttgagctcctctttgtaattatgtatttcctcaccataataatcattatcaatgatagggatattactaatctgtg |
1506111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 24 - 213
Target Start/End: Complemental strand, 3011988 - 3011799
Alignment:
| Q |
24 |
tccattatcaaaagaacagcttcaaccgtcaaacaggacaatcttgatggtgactttaaatgttcaatgacaacttggtaattttcacttaagtcagcta |
123 |
Q |
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|||||||||||||||||||| ||| | |||||| ||| ||| |||| ||| |||||||| ||||||||||||||||||||| || | |||||| ||| |
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| T |
3011988 |
tccattatcaaaagaacagcctcagctgtcaaagaggccaaatttgagagtggttttaaatgctcaatgacaacttggtaatttccattcaagtcaacta |
3011889 |
T |
|
| Q |
124 |
tcactcccagcaacttgagctcctctttgtaattatgtatttcctcaccataataatcattatcaatgatagggatattactaatctgtg |
213 |
Q |
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||||||| |||||||||||||| ||||||||||||| ||||||||||||| ||||| ||| |||||||| ||| |||| |||||| |||| |
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| T |
3011888 |
tcactcctagcaacttgagctcttctttgtaattatatatttcctcaccaaaataagcatgatcaatgaaaggaatatcactaatttgtg |
3011799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 2930778 - 2930971
Alignment:
| Q |
20 |
gcattccattatcaaaagaacagcttcaaccgtcaaacaggacaatcttgatggtgactttaaatgttcaatgacaacttggtaattttcacttaagtca |
119 |
Q |
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|||||||||||||||||||||||| ||| | ||||| | | ||| |||| || ||||| ||||| |||||||| |||||||||||| || |||||||| |
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| T |
2930778 |
gcattccattatcaaaagaacagcctcagcggtcaatgaagccaaatttgaaggcgacttcaaatgctcaatgacgacttggtaatttccagttaagtca |
2930877 |
T |
|
| Q |
120 |
gctatcactcccagcaacttgagctcctctttgtaattatgtatttcctcaccataataatcattatcaatgatagggatattactaatctgtg |
213 |
Q |
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|||||||||| |||||||||||||||||||||||||||| ||||| |||||| ||||| || |||||||| |||||||| |||||| |||| |
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| T |
2930878 |
actatcactcctagcaacttgagctcctctttgtaattatatatttgttcaccaaaataagcacgatcaatgaaagggatatcactaatttgtg |
2930971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 2947425 - 2947584
Alignment:
| Q |
20 |
gcattccattatcaaaagaacagcttcaaccgtcaaacaggacaatcttgatggtgactttaaatgttcaatgacaacttggtaattttcacttaagtca |
119 |
Q |
| |
|
|||||||||||||||||||||||| ||| | |||||| ||| || |||| ||||| |||||||||| | ||||||||||||||| ||||||| ||| |
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| T |
2947425 |
gcattccattatcaaaagaacagcctcagctgtcaaagaggctaaatttgagggtgattttaaatgttgtgtaacaacttggtaatttccacttaaatca |
2947524 |
T |
|
| Q |
120 |
gctatcactcccagcaacttgagctcctctttgtaattatgtatttcctcaccataataa |
179 |
Q |
| |
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||||||||||||||||||| |||||||||||||| |||| ||||||||||||| ||||| |
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| T |
2947525 |
actatcactcccagcaacttaagctcctctttgtagttatatatttcctcaccacaataa |
2947584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 93 - 208
Target Start/End: Original strand, 2921474 - 2921589
Alignment:
| Q |
93 |
acaacttggtaattttcacttaagtcagctatcactcccagcaacttgagctcctctttgtaattatgtatttcctcaccataataatcattatcaatga |
192 |
Q |
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|||| |||||||||| || |||| || |||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||| | ||| || | |
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| T |
2921474 |
acaatttggtaatttccagataagccaactatcactcctagcaacttgagctcctctttgtaattataaatttcttcaccataataagattgatcgataa |
2921573 |
T |
|
| Q |
193 |
tagggatattactaat |
208 |
Q |
| |
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||||||||||||||| |
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| T |
2921574 |
aagggatattactaat |
2921589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 37796282 - 37796472
Alignment:
| Q |
20 |
gcattccattatcaaaagaacagcttcaaccgtcaaacaggacaatcttgatggtgactttaaatgttcaatgacaacttggtaattttcacttaagtca |
119 |
Q |
| |
|
||||| |||||||||||||||||| ||| | |||||| ||| ||| |||| ||||| ||| || | || |||| |||||||||| | | ||| || |
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| T |
37796282 |
gcattgcattatcaaaagaacagcctcagctgtcaaagaggccaaatttgagggtga---taagtgcttgataacaatttggtaatttctattaaagcca |
37796378 |
T |
|
| Q |
120 |
gctatcactcccagcaacttgagctcctctttgtaattatgtatttcctcaccataataatcattatcaatgatagggatattactaatctgtg |
213 |
Q |
| |
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||| |||||||| |||||| |||||||||||||| ||| ||||||||||||| | ||| | | |||||| | ||||||||||||||| |||| |
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| T |
37796379 |
actaccactcccaacaacttcagctcctctttgtagctatatatttcctcaccaaagtaagcttgatcaataaaagggatattactaatttgtg |
37796472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 4916052 - 4915859
Alignment:
| Q |
20 |
gcattccattatcaaaagaacagcttcaaccgtcaaacaggacaatcttgatggtgactttaaatgttcaatgacaacttggtaattttcacttaagtca |
119 |
Q |
| |
|
|||||||||||||||||||| ||| ||| |||||||| | | ||| |||| || |||||||| || |||||||||||||||||| || | |||||| |
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| T |
4916052 |
gcattccattatcaaaagaatagcctcagccgtcaaagaagccaaatttgagggcagttttaaatgctctatgacaacttggtaatttccattgaagtca |
4915953 |
T |
|
| Q |
120 |
gctatcactcccagcaacttgagctcctctttgtaattatgtatttcctcaccataataatcattatcaatgatagggatattactaatctgtg |
213 |
Q |
| |
|
|||||||||| | ||||||||||||| |||||||||||| |||||||||||| ||||||||| |||||||| ||| |||| ||||||||||| |
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| T |
4915952 |
actatcactcctaacaacttgagctccactttgtaattatatatttcctcaccgaaataatcatgatcaatgaaaggtatatcactaatctgtg |
4915859 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 35 - 179
Target Start/End: Original strand, 28025292 - 28025436
Alignment:
| Q |
35 |
aagaacagcttcaaccgtcaaacaggacaatcttgatggtgactttaaatgttcaatgacaacttggtaattttcacttaagtcagctatcactcccagc |
134 |
Q |
| |
|
||||||||| ||| | |||||| ||| ||| ||| ||||| |||||||| || || |||| |||||||||| |||||| | || |||||||||||| | |
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| T |
28025292 |
aagaacagcctcagcggtcaaagaggccaaatatgagggtgattttaaatgctcgataacaatttggtaatttccacttatgccaactatcactcccaac |
28025391 |
T |
|
| Q |
135 |
aacttgagctcctctttgtaattatgtatttcctcaccataataa |
179 |
Q |
| |
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||||| |||||||||||||| | || ||||||||| ||| ||||| |
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| T |
28025392 |
aacttcagctcctctttgtagtcatatatttcctcgccaaaataa |
28025436 |
T |
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