View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5215_high_2 (Length: 540)
Name: NF5215_high_2
Description: NF5215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5215_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 17 - 532
Target Start/End: Original strand, 7922177 - 7922692
Alignment:
| Q |
17 |
attttcaaccttacattaataaagattaatgaaactaacattttccctttgcattaccaacctaattctgaaacttctgttgacatgtatgcagacttca |
116 |
Q |
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| T |
7922177 |
attttcaaccttacatcaataaagattaatgaaactaacattttccctttgcattaccaacctaattctgaaacttctgttgacatgtatgcagacttca |
7922276 |
T |
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| Q |
117 |
attgattggcaatatgtttatccacaaggcatggagaaaattgtcacctatgtaaaaaccagatacaataacactccaatgttcataactgaaaacggta |
216 |
Q |
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| T |
7922277 |
attgattggcaatatgtttatccacaaggcatggagaaaattgtcacctatgtaaaaaccagatacaataacactccaatgttcataactgaaaacggta |
7922376 |
T |
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| Q |
217 |
cgtataacagtgaatcctctaatggatggagtttgtgtgtttctgttttaataaattgttttttaggttatggggagttggacaacccaaataacaccga |
316 |
Q |
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| T |
7922377 |
cgtataacagtgaatcctctaatggatggagtttgtgtgtttctgttttaataaattgttttttaggttatggggagttggacaacccaaataacactga |
7922476 |
T |
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| Q |
317 |
ggagcaataccttaatgattttgacagaaaaaactacatggctggtcatttgctttccctactagaagccataaggtaggatatatgaaaatccagctat |
416 |
Q |
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| T |
7922477 |
ggagcaataccttaatgattttgacagaaaaaactacatggctggtcatttgctttccctactagaagccataaggtaggatatatgaaaacccagctat |
7922576 |
T |
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| Q |
417 |
atgaagtgcattctaaaattaaatctctatctgtgatgtcactttgaaccctatctgtcttttttgtttgtatatataaactcactcaaatttgctcaat |
516 |
Q |
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| T |
7922577 |
atgaagtgcattctaaaattaaatctctatctgtgatgtcactttgaaccctatctgtcttttttgtttgtatatataaactcactcaaatttgctcaat |
7922676 |
T |
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| Q |
517 |
gccatatccctttgct |
532 |
Q |
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| T |
7922677 |
gccatatccctatgct |
7922692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 133 - 216
Target Start/End: Original strand, 55003735 - 55003818
Alignment:
| Q |
133 |
tttatccacaaggcatggagaaaattgtcacctatgtaaaaaccagatacaataacactccaatgttcataactgaaaacggta |
216 |
Q |
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| T |
55003735 |
tttatccacaaggcatggagaaaactgttacatatgtgaaagataggtacaacaatactccaatgttcataactgaaaatggta |
55003818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 208
Target Start/End: Original strand, 54993773 - 54993851
Alignment:
| Q |
130 |
atgtttatccacaaggcatggagaaaattgtcacctatgtaaaaaccagatacaataacactccaatgttcataactga |
208 |
Q |
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| T |
54993773 |
atgtttacccacaaggcatgaagaaaactcttacctatgtgaaggacaggtacaataacactccaatgttcattactga |
54993851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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