View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5215_high_3 (Length: 389)
Name: NF5215_high_3
Description: NF5215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5215_high_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 46288021 - 46287633
Alignment:
| Q |
1 |
aaagagttgcttgtatgaagagatgaatttgaaagagaattgattcacagctcttgagacaatgtcctcataatcagagggtaaaaaggtcttccaaacc |
100 |
Q |
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| T |
46288021 |
aaagagttgcttgtatgaagagatgaatttgaaagagaattgattcacagctcttgagacaatgtcctcgtaatcagagggtaaaaaggtcttccaaacc |
46287922 |
T |
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| Q |
101 |
aagtcagaatctgcaactttgacaaaagtgttggaaaccaataaaaatctacatgcatcttgtggtgatgtatgtgacaatattgcagaaacacaatcct |
200 |
Q |
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| T |
46287921 |
aagtcagaatctgcaactttgacaaaagtgttggaaaccaataaaaatctacatgcatcttgtggtgatgtatgtgataatattgcagaaacacaatcct |
46287822 |
T |
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| Q |
201 |
ccggcaaggaaactattgatgtagtggaattcattttgtttcttggttgtacgatgatatttatgtcttagggtaacatcggtggaagaaaaattaggga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
46287821 |
ccggcaaggaaactattgatgtagtggaattcattttgtttcttggttgtacgatgatatttatgtcttagggtaacatcggtgaaagaaaaattaggga |
46287722 |
T |
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| Q |
301 |
gaagaaaactatttgagaggctgtgggttttccaaaactggaactattaaatttggggttgaatttttattatctttatatgtagtcat |
389 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46287721 |
gaagaaaactatttgagaggttgtgggttttccaaaactggaactattaaatttggggttgaatttttattatctttatatgtagtcat |
46287633 |
T |
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