View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5215_high_4 (Length: 369)
Name: NF5215_high_4
Description: NF5215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5215_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 5467239 - 5467578
Alignment:
| Q |
18 |
ctaagaatatttatgattcatcaatacctccctggttgttcaacatcagtaccctcacacaacttattctttcttattcatctgtaagaggtttatttcc |
117 |
Q |
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| T |
5467239 |
ctaagaatatttatgattcctcaatacctccctggttgttcaacatcagtaccctcacacaacttattctttcttattcatctgtaagaggtttatttcc |
5467338 |
T |
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| Q |
118 |
ttctatgcttgggaaatggaatcttcacaatcttcagaatctagacctatcatttaatgatctaaccattgatatatctcaagtaatggaggccttgtct |
217 |
Q |
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| T |
5467339 |
ttctatgcttgggaaatggaatcttcacaatcttcgaaatctagacctatcatctaatgatctaaccattgatataactcaagtaatggaggccttgtct |
5467438 |
T |
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| Q |
218 |
tgtagcaaccaaagcctggaggttctagatttgaattataatcaactaactgggaaattgcctcattcattaggaaaacttactagtttgcgtcagcttg |
317 |
Q |
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| T |
5467439 |
tgtagcaaccaaagcctggaggttctagatttgaattataatcaactaactgggaaattgcctcattcattaggaaaacttactagtttgcgtcagcttg |
5467538 |
T |
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| Q |
318 |
acatttgtaacaacctcttgacctcacacataggtatctc |
357 |
Q |
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| T |
5467539 |
acattagtaacaacctcttgacctcacacataggtatctc |
5467578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 206 - 307
Target Start/End: Original strand, 5477062 - 5477163
Alignment:
| Q |
206 |
gaggccttgtcttgtagcaaccaaagcctggaggttctagatttgaattataatcaactaactgggaaattgcctcattcattaggaaaacttactagtt |
305 |
Q |
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| T |
5477062 |
gaggcattgtcttgtagcaaccaaagcctagagtttttagatttaaggtttaatcaactaactgggaaattgcctcattcattagggaaatttactagtt |
5477161 |
T |
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| Q |
306 |
tg |
307 |
Q |
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|| |
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| T |
5477162 |
tg |
5477163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 206 - 291
Target Start/End: Original strand, 5482127 - 5482212
Alignment:
| Q |
206 |
gaggccttgtcttgtagcaaccaaagcctggaggttctagatttgaattataatcaactaactgggaaattgcctcattcattagg |
291 |
Q |
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| T |
5482127 |
gaggccttgtcttgtggaaaccaaagcctgaagtttttaaatttgggtagtaatcaactaactgggaaattgcctcattctttagg |
5482212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 291
Target Start/End: Original strand, 5495969 - 5496054
Alignment:
| Q |
206 |
gaggccttgtcttgtagcaaccaaagcctggaggttctagatttgaattataatcaactaactgggaaattgcctcattcattagg |
291 |
Q |
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| T |
5495969 |
gaggccatgtcttgtagcaaccaaagtttgatgttgttggatttgagttataaccaactaactgggaaattgcctcattctttagg |
5496054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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