View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5215_high_8 (Length: 285)
Name: NF5215_high_8
Description: NF5215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5215_high_8 |
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| [»] scaffold0393 (1 HSPs) |
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Alignment Details
Target: scaffold0393 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 37 - 274
Target Start/End: Complemental strand, 12927 - 12690
Alignment:
| Q |
37 |
cacacgcacacaatgcacgttgatcatatacttcagcactagaatgatactaagaatgtttataatgaattgaatatgaagaaaataaaagacaacaagg |
136 |
Q |
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| T |
12927 |
cacacgcacacaatgcacgttgatcatatacttcagcactagaatgatactaagaatgtttataatgaattgaatatgaagaaaataaaagacaacaagg |
12828 |
T |
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| Q |
137 |
aagtgtatatggtcttacacagagttgctcccctctgttgacaacatcatagaagaaagaatatcaggcacaaaagttttcagcaaaacacagatattgg |
236 |
Q |
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| T |
12827 |
aagtgtatatggtcttacacagagttgctcccctctgttgacaacatcatagaagaaagaataacaggcacaaaagttttcagcaaaacacagatattgg |
12728 |
T |
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| Q |
237 |
tcttttttcctggattcccctgtaacccaagaaaatgg |
274 |
Q |
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| T |
12727 |
tcttttttcctggattcccctgtaacctaagaaaatgg |
12690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 37 - 274
Target Start/End: Complemental strand, 2410550 - 2410313
Alignment:
| Q |
37 |
cacacgcacacaatgcacgttgatcatatacttcagcactagaatgatactaagaatgtttataatgaattgaatatgaagaaaataaaagacaacaagg |
136 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2410550 |
cacacgcacacaatgcacattgattgtatacttcagcactagaatgatactaagaatgtttataatgaattgaatatgaagaaaataaaagacaacaagg |
2410451 |
T |
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| Q |
137 |
aagtgtatatggtcttacacagagttgctcccctctgttgacaacatcatagaagaaagaatatcaggcacaaaagttttcagcaaaacacagatattgg |
236 |
Q |
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| T |
2410450 |
aagtgtatatggtcttacacagagttgctcccctctgttgacaacatcatagaagaaagaataacaggcacaaaagttttcagcaaaacacagatattgg |
2410351 |
T |
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| Q |
237 |
tcttttttcctggattcccctgtaacccaagaaaatgg |
274 |
Q |
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| T |
2410350 |
tcttttttcctggattcccctgtaacctaagaaaatgg |
2410313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 87 - 263
Target Start/End: Complemental strand, 30598541 - 30598367
Alignment:
| Q |
87 |
taagaatgtttataatgaattgaatatgaagaaaataaaagacaacaaggaagtgtatatggtcttacacagagttgctcccctctgttgacaacatcat |
186 |
Q |
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|||||||| ||||||| ||||||||| ||| || | |||| ||| |||| |||||||| || |||||||||||||| |||||| ||||||| | ||| | |
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| T |
30598541 |
taagaatgcttataattaattgaataagaaaaata-aaaacacagcaagaaagtgtat--ggccttacacagagttgttcccctttgttgacgaaatcgt |
30598445 |
T |
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| Q |
187 |
agaagaaagaatatcaggcacaaaagttttcagcaaaacacagatattggt-cttttttcctggattcccctgtaacc |
263 |
Q |
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| T |
30598444 |
aaaagaaagagtaacaggcacaaaagttttcagcaaaacacagatactggtatttttttcctggattcccctgtaacc |
30598367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 159 - 249
Target Start/End: Original strand, 39960660 - 39960750
Alignment:
| Q |
159 |
agttgctcccctctgttgacaacatcatagaagaaagaatatcaggcacaaaagttttcagcaaaacacagatattggtcttttttcctgg |
249 |
Q |
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||||| |||||| |||| ||||||||||||||||||||||| ||||||||||||||||||| |||| | | ||| ||||||||||| |||| |
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| T |
39960660 |
agttgttcccctgtgtttacaacatcatagaagaaagaataacaggcacaaaagttttcagaaaaatagatatactggtctttttttctgg |
39960750 |
T |
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