View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5215_low_10 (Length: 250)

Name: NF5215_low_10
Description: NF5215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5215_low_10
NF5215_low_10
[»] scaffold0393 (1 HSPs)
scaffold0393 (1-237)||(12320-12556)
[»] chr3 (16 HSPs)
chr3 (1-154)||(2410026-2410179)
chr3 (53-180)||(52925681-52925807)
chr3 (56-164)||(3845198-3845305)
chr3 (116-193)||(35132330-35132406)
chr3 (115-191)||(41115422-41115497)
chr3 (55-181)||(39256566-39256691)
chr3 (115-184)||(33548193-33548262)
chr3 (115-191)||(43987611-43987687)
chr3 (122-190)||(48411007-48411075)
chr3 (145-232)||(4194008-4194094)
chr3 (119-170)||(54596772-54596823)
chr3 (113-179)||(38626642-38626707)
chr3 (140-184)||(7717388-7717431)
chr3 (115-183)||(35284254-35284322)
chr3 (115-154)||(21513425-21513464)
chr3 (124-181)||(1114654-1114711)
[»] chr6 (16 HSPs)
chr6 (55-191)||(29240511-29240646)
chr6 (53-184)||(6544565-6544695)
chr6 (115-191)||(33141766-33141842)
chr6 (119-184)||(5724697-5724761)
chr6 (71-173)||(34620793-34620894)
chr6 (71-173)||(34748230-34748331)
chr6 (116-181)||(2234283-2234348)
chr6 (118-182)||(26550631-26550695)
chr6 (115-182)||(33997148-33997215)
chr6 (115-169)||(26550469-26550523)
chr6 (54-163)||(33136570-33136677)
chr6 (121-173)||(2008579-2008631)
chr6 (121-181)||(13687547-13687607)
chr6 (142-182)||(24974192-24974232)
chr6 (115-191)||(26280555-26280630)
chr6 (137-181)||(32943723-32943767)
[»] chr7 (12 HSPs)
chr7 (115-216)||(45369112-45369213)
chr7 (60-158)||(48290287-48290384)
chr7 (115-190)||(21436060-21436135)
chr7 (115-194)||(45004970-45005048)
chr7 (135-181)||(40422762-40422808)
chr7 (115-158)||(12306684-12306727)
chr7 (115-161)||(29829445-29829491)
chr7 (52-83)||(33504568-33504599)
chr7 (117-191)||(7087351-7087425)
chr7 (115-161)||(12306927-12306973)
chr7 (176-217)||(3141112-3141153)
chr7 (140-217)||(5489880-5489956)
[»] chr5 (19 HSPs)
chr5 (61-181)||(10898619-10898738)
chr5 (53-184)||(29922783-29922913)
chr5 (114-182)||(29922575-29922643)
chr5 (115-160)||(38045399-38045444)
chr5 (115-194)||(33608452-33608532)
chr5 (142-195)||(7667586-7667639)
chr5 (118-190)||(10161779-10161851)
chr5 (115-203)||(13224666-13224753)
chr5 (115-217)||(1105389-1105492)
chr5 (117-187)||(11132849-11132919)
chr5 (142-184)||(42439684-42439726)
chr5 (115-191)||(12208901-12208978)
chr5 (113-175)||(9952693-9952755)
chr5 (119-173)||(27374368-27374422)
chr5 (134-191)||(7668083-7668139)
chr5 (117-161)||(11134290-11134334)
chr5 (115-191)||(35439065-35439141)
chr5 (145-177)||(37121565-37121597)
chr5 (161-237)||(38822278-38822354)
[»] chr8 (14 HSPs)
chr8 (115-195)||(40881049-40881129)
chr8 (115-212)||(11038132-11038229)
chr8 (55-163)||(41614735-41614842)
chr8 (115-190)||(5997343-5997418)
chr8 (58-195)||(32056259-32056394)
chr8 (55-186)||(35495151-35495280)
chr8 (115-161)||(29979506-29979552)
chr8 (115-195)||(8252747-8252827)
chr8 (115-191)||(13929765-13929842)
chr8 (117-158)||(36447962-36448003)
chr8 (116-163)||(38386309-38386356)
chr8 (115-164)||(34469252-34469301)
chr8 (115-156)||(38524107-38524147)
chr8 (115-184)||(39648406-39648475)
[»] chr4 (27 HSPs)
chr4 (115-181)||(25318997-25319063)
chr4 (52-184)||(29468698-29468829)
chr4 (116-192)||(2171738-2171814)
chr4 (55-170)||(2635054-2635168)
chr4 (63-217)||(8330013-8330167)
chr4 (135-191)||(18597009-18597065)
chr4 (115-175)||(33560646-33560706)
chr4 (119-194)||(9082879-9082953)
chr4 (121-195)||(2206399-2206473)
chr4 (55-105)||(47596440-47596490)
chr4 (147-184)||(11271604-11271641)
chr4 (140-217)||(26617443-26617519)
chr4 (120-184)||(54705457-54705521)
chr4 (116-179)||(471938-472001)
chr4 (123-182)||(1455633-1455692)
chr4 (140-191)||(32818430-32818480)
chr4 (145-184)||(52063117-52063156)
chr4 (145-191)||(44845726-44845772)
chr4 (115-217)||(51093208-51093309)
chr4 (119-156)||(22250180-22250217)
chr4 (115-184)||(22683813-22683882)
chr4 (55-130)||(50375572-50375644)
chr4 (122-178)||(4451413-4451469)
chr4 (115-191)||(9134560-9134635)
chr4 (150-190)||(26617193-26617233)
chr4 (115-183)||(35995178-35995246)
chr4 (121-161)||(49138851-49138891)
[»] chr2 (21 HSPs)
chr2 (116-194)||(11510904-11510982)
chr2 (88-190)||(33502909-33503010)
chr2 (56-191)||(37561599-37561732)
chr2 (115-191)||(4908739-4908815)
chr2 (115-190)||(36987172-36987247)
chr2 (115-176)||(7630366-7630427)
chr2 (125-245)||(38129472-38129591)
chr2 (151-237)||(5977166-5977253)
chr2 (126-180)||(14110638-14110692)
chr2 (86-195)||(44439172-44439283)
chr2 (135-184)||(3476496-3476545)
chr2 (108-192)||(1101946-1102030)
chr2 (113-184)||(680344-680414)
chr2 (115-154)||(39702528-39702567)
chr2 (59-152)||(9943318-9943410)
chr2 (53-130)||(42982443-42982519)
chr2 (140-184)||(2002762-2002805)
chr2 (140-184)||(7629845-7629889)
chr2 (141-173)||(33502223-33502255)
chr2 (140-184)||(36979122-36979166)
chr2 (129-217)||(40959682-40959770)
[»] chr1 (14 HSPs)
chr1 (119-217)||(48635225-48635322)
chr1 (115-184)||(32088640-32088708)
chr1 (113-195)||(51158469-51158551)
chr1 (57-184)||(6021695-6021822)
chr1 (115-189)||(15452436-15452510)
chr1 (60-194)||(41516883-41517016)
chr1 (119-170)||(646134-646185)
chr1 (115-154)||(18325187-18325226)
chr1 (56-107)||(20721057-20721108)
chr1 (117-183)||(404121-404187)
chr1 (141-191)||(5268194-5268244)
chr1 (142-184)||(5407777-5407819)
chr1 (134-184)||(52013545-52013594)
chr1 (115-199)||(12655194-12655278)
[»] scaffold0168 (1 HSPs)
scaffold0168 (56-184)||(31718-31844)


Alignment Details
Target: scaffold0393 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 12556 - 12320
Alignment:
Q  1 aacaggacactaacatgtaaacgcagacacaaatttgagaaaatgaaagtgattagtgtatgtttgatttcacttttggaggaatcaaaattgtttctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||    
T  12556 aacaggacactaacatgtaaacgcagacacaaatttgagaaaatgaaagtgattactttatgtttgatttcacttttggaggagtcaaaattgtttctaa 12457  T
Q  101 aggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagcattta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12456 aggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagcattta 12357  T
Q  201 cctatataattgattttccgcctctaatttattgttc 237  Q
    |||||||||||||  ||||||||||||||||||||||    
T  12356 cctatataattgacgttccgcctctaatttattgttc 12320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 2410179 - 2410026
Alignment:
Q  1 aacaggacactaacatgtaaacgcagacacaaatttgagaaaatgaaagtgattagtgtatgtttgatttcacttttggaggaatcaaaattgtttctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  2410179 aacaggacactaacatgtaaacgcagacacaaatttgagaaaatgaaagtgattagtgtatgtttgatttcacttttggtggagtcaaaattgtttctaa 2410080  T
Q  101 aggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgatttt 154  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2410079 aggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatttt 2410026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 52925807 - 52925681
Alignment:
Q  53 ttagtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgatt 152  Q
    |||||||||||| | || ||||||||||||| ||||||||| ||||| ||||||| ||  | |||||||||||||||| || ||||| |||||||  |||    
T  52925807 ttagtgtatgttcggttccacttttggaggagtcaaaattgattctagaggtgtataat-tgattttgacatgtttggttgctctcacgtagaatcaatt 52925709  T
Q  153 ttgcctccagaaatgattctaacttgaa 180  Q
    ||||||||| || |||||||||||||||    
T  52925708 ttgcctccataactgattctaacttgaa 52925681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 56 - 164
Target Start/End: Complemental strand, 3845305 - 3845198
Alignment:
Q  56 gtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgattttg 155  Q
    ||||||||||| || ||||||||||| || |||||||| ||||| ||||||| ||  | |||||||||||||||  || |||||||||||||||||| ||    
T  3845305 gtgtatgtttggttccacttttggagtaaccaaaattgattctagaggtgtagaat-tgattttgacatgtttgtttgatctcaagtagaattgattctg 3845207  T
Q  156 cctccagaa 164  Q
    |||| ||||    
T  3845206 cctctagaa 3845198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 193
Target Start/End: Complemental strand, 35132406 - 35132330
Alignment:
Q  116 ttttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttgga 193  Q
    |||||||||||||||||||| |||| |||||||||||||  ||| ||||| ||||||  |||||||||||||||||||    
T  35132406 ttttgacatgtttggatgttatcaattagaattgattttttctcgagaaa-gattcttgcttgaagctacaatttgga 35132330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 41115497 - 41115422
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttg 191  Q
    ||||||||||||||||||||| | |||||||||||||||||| |  |||| ||||||| ||||||||||| ||||||    
T  41115497 attttgacatgtttggatgttttaaagtagaattgattttgcttgtagaattgattct-acttgaagctagaatttg 41115422  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 181
Target Start/End: Original strand, 39256566 - 39256691
Alignment:
Q  55 agtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgatttt 154  Q
    ||||| |||||| || ||||||||||| ||||||||||  ||||| ||||||| ||  | |||||||||||||||  |  |||||||||||||||| |||    
T  39256566 agtgtgtgtttggttccacttttggagaaatcaaaattagttctagaggtgtagaat-tgattttgacatgtttgattactctcaagtagaattgacttt 39256664  T
Q  155 gcctccagaaatgattctaacttgaag 181  Q
    | ||||| || || |||| ||||||||    
T  39256665 gactccaaaattgtttctgacttgaag 39256691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 33548193 - 33548262
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagcta 184  Q
    ||||||||||||||||||| | | |||||||||||||||| ||| || ||  ||||||||||||||||||    
T  33548193 attttgacatgtttggatgctattaagtagaattgatttttccttcaaaatggattctaacttgaagcta 33548262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 43987687 - 43987611
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttg 191  Q
    |||||||||||||||||||||||  |||| ||||||||||| || |||||   ||||||||| ||||||| ||||||    
T  43987687 attttgacatgtttggatgttcttgagtacaattgattttgtctacagaatcaattctaactggaagctagaatttg 43987611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 48411007 - 48411075
Alignment:
Q  122 catgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaattt 190  Q
    |||||||| |||||||| |||||| || |||||||||| |||| |||||||||||||||| || |||||    
T  48411007 catgtttgaatgttctcgagtagatttaattttgcctctagaattgattctaacttgaagttaaaattt 48411075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 4194094 - 4194008
Alignment:
Q  145 aattgattttgcctccagaaatgattctaacttgaagctacaatttggagcatttacctatataattgattttccgcctctaatttat 232  Q
    ||||||||| |||||||||| |||||||||||| |||||| |||||| ||  ||| ||| || ||||||||||  |||||||||||||    
T  4194094 aattgatttggcctccagaattgattctaactt-aagctagaatttgaagtgtttgcctctacaattgatttttagcctctaatttat 4194008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 54596772 - 54596823
Alignment:
Q  119 tgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgatt 170  Q
    |||||||||||| |||| |||||||||||||||| |||||||| ||||||||    
T  54596772 tgacatgtttggttgttttcaagtagaattgattctgcctccaaaaatgatt 54596823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 179
Target Start/End: Original strand, 38626642 - 38626707
Alignment:
Q  113 ttattttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttga 179  Q
    ||||||||||||||||||||||| || |||| |||||||||||||||  ||| ||||| ||||||||    
T  38626642 ttattttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataacttga 38626707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 7717431 - 7717388
Alignment:
Q  140 agtagaattgattttgcctccagaaatgattctaacttgaagcta 184  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  7717431 agtagaattgattttgcctccagaattgattct-acttgaagcta 7717388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 35284254 - 35284322
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagct 183  Q
    |||||||||| |||| |||||||  | || ||||| ||||||||||| ||| |||||||||||||||||    
T  35284254 attttgacatatttgtatgttcttgattataattgcttttgcctccaaaaaagattctaacttgaagct 35284322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 154
Target Start/End: Complemental strand, 21513464 - 21513425
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgatttt 154  Q
    ||||| ||||| ||||||||||||||||||||||||||||    
T  21513464 attttaacatgcttggatgttctcaagtagaattgatttt 21513425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 1114654 - 1114711
Alignment:
Q  124 tgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaag 181  Q
    |||||||||||| || || |||||||||||||||| |  || ||||||||||||||||    
T  1114654 tgtttggatgttttctagcagaattgattttgccttcgaaattgattctaacttgaag 1114711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 55 - 191
Target Start/End: Complemental strand, 29240646 - 29240511
Alignment:
Q  55 agtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgatttt 154  Q
    |||||||||||| || ||||||||| ||||||||||||| ||||| ||||||||||  | ||||||||||||| |||| || ||||||||||||||||||    
T  29240646 agtgtatgtttggttccacttttgggggaatcaaaattgattctagaggtgtaaaat-tgattttgacatgttaggatattttcaagtagaattgatttt 29240548  T
Q  155 gcctccagaaatgattctaacttgaagctacaatttg 191  Q
     ||||||||  ||||||||||||||||||| ||||||    
T  29240547 acctccagagttgattctaacttgaagctaaaatttg 29240511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 53 - 184
Target Start/End: Complemental strand, 6544695 - 6544565
Alignment:
Q  53 ttagtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgatt 152  Q
    |||||| ||||||| |||||| |||||||||   ||||||| ||||| ||||||||||  ||||||||||| | ||  ||||| ||||||| ||||||||    
T  6544695 ttagtgaatgtttggtttcacatttggaggaggaaaaattgattctataggtgtaaaat-ttattttgacaagctttaatgttttcaagtaaaattgatt 6544597  T
Q  153 ttgcctccagaaatgattctaacttgaagcta 184  Q
    |||||| ||||| |||||||||||||||||||    
T  6544596 ttgccttcagaattgattctaacttgaagcta 6544565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 33141842 - 33141766
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttg 191  Q
    ||||||| |||||||| || ||||||||| |||||||||| ||||||||| ||||||||||| ||| ||| ||||||    
T  33141842 attttgatatgtttggttgctctcaagtataattgattttacctccagaattgattctaactagaacctagaatttg 33141766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 5724761 - 5724697
Alignment:
Q  119 tgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagcta 184  Q
    ||||||||||||||| | ||| ||||||||||||||||||||| || ||||||| |||||||||||    
T  5724761 tgacatgtttggatgctttcaggtagaattgattttgcctccaaaattgattct-acttgaagcta 5724697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 34620793 - 34620894
Alignment:
Q  71 cacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgatt 170  Q
    |||||||||||||  |||||||| |||||||||||| | || | |||||||||||||||| |  | | || ||||||| ||||||||||| ||| |||||    
T  34620793 cacttttggaggacccaaaattgattctaaaggtgt-agaattgattttgacatgtttggttcctataaactagaattaattttgcctccggaattgatt 34620891  T
Q  171 cta 173  Q
    |||    
T  34620892 cta 34620894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 34748230 - 34748331
Alignment:
Q  71 cacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgatt 170  Q
    |||||||||||||  |||||||| |||||||||||| | || | |||||||||||||||| |  | | || ||||||| ||||||||||| ||| |||||    
T  34748230 cacttttggaggacccaaaattgattctaaaggtgt-agaattgattttgacatgtttggttcctataaactagaattaattttgcctccggaattgatt 34748328  T
Q  171 cta 173  Q
    |||    
T  34748329 cta 34748331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 2234348 - 2234283
Alignment:
Q  116 ttttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaag 181  Q
    |||||| |||||||| || |||  ||||||||||||||||||||| ||| |||||||||| |||||    
T  2234348 ttttgatatgtttggttgctcttgagtagaattgattttgcctcctgaattgattctaacatgaag 2234283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 182
Target Start/End: Original strand, 26550631 - 26550695
Alignment:
Q  118 ttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagc 182  Q
    ||||||||||||| ||| ||||| |||||||||||||| ||| |||| ||||| || ||||||||    
T  26550631 ttgacatgtttggttgtactcaactagaattgattttgtctctagaattgattttatcttgaagc 26550695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 182
Target Start/End: Original strand, 33997148 - 33997215
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagc 182  Q
    |||||||||||||||| |  ||||||| |  ||||||||||||| || || |||||||||||||||||    
T  33997148 attttgacatgtttggtttctctcaagcattattgattttgccttcacaattgattctaacttgaagc 33997215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 26550469 - 26550523
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgat 169  Q
    |||||||||||||||| ||| ||||| |||||||||||||| ||| |||| ||||    
T  26550469 attttgacatgtttggttgtactcaactagaattgattttgtctctagaattgat 26550523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 163
Target Start/End: Complemental strand, 33136677 - 33136570
Alignment:
Q  54 tagtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgattt 153  Q
    |||||||| |||| |||||||||||||  |  |||||||  ||||| ||||||| ||  | |||||||||||||||| || |||| |||| |||||||||    
T  33136677 tagtgtatatttggtttcacttttggaa-agccaaaattaattctagaggtgtataat-tgattttgacatgtttggttgctctcgagtataattgattt 33136580  T
Q  154 tgcctccaga 163  Q
    | ||||||||    
T  33136579 tacctccaga 33136570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 2008631 - 2008579
Alignment:
Q  121 acatgtttggatgttctcaagtagaattgattttgcctccagaaatgattcta 173  Q
    |||||||||| || | || ||||||||||||||||||||||||| | ||||||    
T  2008631 acatgtttggttgctttctagtagaattgattttgcctccagaattaattcta 2008579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 13687547 - 13687607
Alignment:
Q  121 acatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaag 181  Q
    |||||||| ||||||||| |||||||| || ||||||| ||  | ||||||||||||||||    
T  13687547 acatgtttagatgttctcgagtagaatagaatttgccttcatgattgattctaacttgaag 13687607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 24974192 - 24974232
Alignment:
Q  142 tagaattgattttgcctccagaaatgattctaacttgaagc 182  Q
    |||||||||||||||||||| || |||||||||| ||||||    
T  24974192 tagaattgattttgcctccaaaattgattctaacatgaagc 24974232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 26280555 - 26280630
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttg 191  Q
    |||||||||||||||  |||| |   ||||||||||||||||||| |||| ||||||  ||||||||||| ||||||    
T  26280555 attttgacatgtttgattgttttttggtagaattgattttgcctcaagaattgattc-cacttgaagctagaatttg 26280630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 32943767 - 32943723
Alignment:
Q  137 tcaagtagaattgattttgcctccagaaatgattctaacttgaag 181  Q
    ||||||||||||| ||||||||| ||||  |||||||||||||||    
T  32943767 tcaagtagaattgcttttgcctctagaatcgattctaacttgaag 32943723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 115 - 216
Target Start/End: Original strand, 45369112 - 45369213
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagcatttacctatataattgat 214  Q
    ||||||| |||||||||||||||||||||||||||||||||| || |||| ||||| ||||||||||||| |||| ||||| ||| ||| || |||||||    
T  45369112 attttgagatgtttggatgttctcaagtagaattgattttgcttctagaattgattttaacttgaagctagaattcggagcttttgcctctaaaattgat 45369211  T
Q  215 tt 216  Q
    ||    
T  45369212 tt 45369213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 158
Target Start/End: Original strand, 48290287 - 48290384
Alignment:
Q  60 atgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgattttgcct 158  Q
    ||||||||||||||||||||||||  |||||||| ||  | |||| |  ||| | ||||||||||||||||||||| ||||| ||||||||||||||||    
T  48290287 atgtttgatttcacttttggaggatacaaaattgatttcataggt-tggaaattgattttgacatgtttggatgttttcaagcagaattgattttgcct 48290384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 21436135 - 21436060
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaattt 190  Q
    ||||||||||||||  |||||||| ||||||||| ||||| |||| |||| ||||| ||||||||||||| |||||    
T  21436135 attttgacatgttttaatgttctcgagtagaatttattttacctcgagaattgattttaacttgaagctagaattt 21436060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 45004970 - 45005048
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggag 194  Q
    |||||||||||||||| || |||| | ||||||||||||||||| ||||| ||||||| ||||||||||| || ||||||    
T  45004970 attttgacatgtttggttgctctcgaatagaattgattttgccttcagaattgattct-acttgaagctaaaaattggag 45005048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 40422762 - 40422808
Alignment:
Q  135 tctcaagtagaattgattttgcctccagaaatgattctaacttgaag 181  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||    
T  40422762 tctcaagtagaattgattttgcctcaagaattgattctaacttgaag 40422808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 158
Target Start/End: Original strand, 12306684 - 12306727
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcct 158  Q
    |||||||||||||||| || ||||||||||||||||||||||||    
T  12306684 attttgacatgtttggttgctctcaagtagaattgattttgcct 12306727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 29829491 - 29829445
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctcca 161  Q
    |||||| |||| ||||||| |||||||||||||||||||||||||||    
T  29829491 attttgtcatgcttggatgctctcaagtagaattgattttgcctcca 29829445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 83
Target Start/End: Complemental strand, 33504599 - 33504568
Alignment:
Q  52 attagtgtatgtttgatttcacttttggagga 83  Q
    ||||||||||||||||||||||||||||||||    
T  33504599 attagtgtatgtttgatttcacttttggagga 33504568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 7087425 - 7087351
Alignment:
Q  117 tttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttg 191  Q
    ||||||||||||| ||||| || ||||||||||||||||  |  |||| || || ||||||||||||| ||||||    
T  7087425 tttgacatgtttgaatgttttcgagtagaattgattttgtttttagaattggttttaacttgaagctagaatttg 7087351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 12306927 - 12306973
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctcca 161  Q
    |||||||||||||||| || |||  ||||||||||||||||||||||    
T  12306927 attttgacatgtttggttgctcttgagtagaattgattttgcctcca 12306973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 3141153 - 3141112
Alignment:
Q  176 ttgaagctacaatttggagcatttacctatataattgatttt 217  Q
    ||||||||| |||||||||| ||||||| |||||||||||||    
T  3141153 ttgaagctaaaatttggagcttttacctgtataattgatttt 3141112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 5489956 - 5489880
Alignment:
Q  140 agtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagcatttacctatataattgatttt 217  Q
    ||||||||| |||||||||||| || ||||||| |||||| |||| || ||||||| |||   |||||||||||||||    
T  5489956 agtagaattaattttgcctccaaaattgattct-acttgatgctagaaattggagcttttgattatataattgatttt 5489880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 61 - 181
Target Start/End: Original strand, 10898619 - 10898738
Alignment:
Q  61 tgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgattttgcctcc 160  Q
    |||| |||||||||||||||||||||||||||| ||||| || |||  ||  | |||||||||||||||| || |||| |||| |||||||||||||||     
T  10898619 tgttcgatttcacttttggaggaatcaaaattgattctagagctgtcgaat-taattttgacatgtttggttgctctcgagtaaaattgattttgcctct 10898717  T
Q  161 agaaatgattctaacttgaag 181  Q
    |||| ||||||||||||||||    
T  10898718 agaattgattctaacttgaag 10898738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 184
Target Start/End: Original strand, 29922783 - 29922913
Alignment:
Q  53 ttagtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgatt 152  Q
    |||||||||||||  || ||||||| ||||| ||||||||| |||||   ||||| ||  | |||||||||||||||| ||||||| || ||||||||||    
T  29922783 ttagtgtatgtttacttccactttttgaggagtcaaaattgattctagtagtgtagaat-tgattttgacatgtttggttgttctcgagcagaattgatt 29922881  T
Q  153 ttgcctccagaaatgattctaacttgaagcta 184  Q
    ||| ||| |||| ||||| |||||||||||||    
T  29922882 ttgtctcaagaattgattttaacttgaagcta 29922913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 29922575 - 29922643
Alignment:
Q  114 tattttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagc 182  Q
    ||||||||||||||||  ||||||| |||||||||||||||||||| |||| ||||| |||||||||||    
T  29922575 tattttgacatgtttgattgttctctagtagaattgattttgcctcaagaattgattttaacttgaagc 29922643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 38045399 - 38045444
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctcc 160  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  38045399 attttgacatgtttgaatgttctcaagtagaattgattttgcctcc 38045444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 33608452 - 33608532
Alignment:
Q  115 attttgacatgtttggatgttctcaa-gtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggag 194  Q
    |||||||||||||||| || |||||| ||||||||| ||||||||  |||| ||||||||||||||||||| || ||||||    
T  33608452 attttgacatgtttggttggtctcaaagtagaattggttttgccttgagaattgattctaacttgaagctagaagttggag 33608532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 7667586 - 7667639
Alignment:
Q  142 tagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagc 195  Q
    ||||||||| ||||||| ||||| ||||||||||||||||||| ||||||||||    
T  7667586 tagaattgactttgccttcagaattgattctaacttgaagctagaatttggagc 7667639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 10161779 - 10161851
Alignment:
Q  118 ttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaattt 190  Q
    ||||||||||||  ||||||| | ||||||||| |||||||| |||| |||||||||| || |||||||||||    
T  10161779 ttgacatgtttgattgttctcgaatagaattgactttgcctctagaattgattctaacatgcagctacaattt 10161851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 13224753 - 13224666
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagcatttacct 203  Q
    |||||||||||||||||||||| | |||| |||||||||||  || | || | |||| |||||||||||| |||||||||| |||||||    
T  13224753 attttgacatgtttggatgttc-cgagtataattgattttgtttctataattcattcaaacttgaagctagaatttggagcttttacct 13224666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 1105389 - 1105492
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagcattt-acctatataattga 213  Q
    |||||||||| ||||| ||||||||||||||||||||||||| | || || ||||| ||||| |||| ||  ||||| ||| ||| || | |||||||||    
T  1105389 attttgacatttttggctgttctcaagtagaattgattttgctttcaaaattgattttaactcgaagttatgatttgtagcttttgacttctataattga 1105488  T
Q  214 tttt 217  Q
    ||||    
T  1105489 tttt 1105492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 11132919 - 11132849
Alignment:
Q  117 tttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaa 187  Q
    |||||||||||||| || |||| ||||||||| |||||| |  || || ||||||||||||||||||||||    
T  11132919 tttgacatgtttggttgctctctagtagaatttattttggcgtcaaaattgattctaacttgaagctacaa 11132849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 42439726 - 42439684
Alignment:
Q  142 tagaattgattttgcctccagaaatgattctaacttgaagcta 184  Q
    ||||||||||||| ||||||||| |||||||||||||||||||    
T  42439726 tagaattgatttttcctccagaattgattctaacttgaagcta 42439684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 12208978 - 12208901
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcc-tccagaaatgattctaacttgaagctacaatttg 191  Q
    |||||||||||||||||||||||| ||||||||||  |||||| | | ||| ||| |||||| |||||||| ||||||    
T  12208978 attttgacatgtttggatgttctcgagtagaattgtctttgccttacggaattgactctaacgtgaagctagaatttg 12208901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 9952755 - 9952693
Alignment:
Q  113 ttattttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaac 175  Q
    ||||||||||||||||| ||||||||    ||||| ||||||||||| |||| ||||||||||    
T  9952755 ttattttgacatgtttgaatgttctctgacagaatagattttgcctctagaattgattctaac 9952693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 27374422 - 27374368
Alignment:
Q  119 tgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattcta 173  Q
    |||||||||||| |||| |||||||||||| |||||||||  |||| ||||||||    
T  27374422 tgacatgtttggttgttttcaagtagaattaattttgccttaagaattgattcta 27374368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 7668083 - 7668139
Alignment:
Q  134 ttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttg 191  Q
    ||||| ||||||||||| ||||||||||| |||||||| |||||| ||||| ||||||    
T  7668083 ttctcgagtagaattgaatttgcctccag-aatgattccaacttgtagctagaatttg 7668139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 11134290 - 11134334
Alignment:
Q  117 tttgacatgtttggatgttctcaagtagaattgattttgcctcca 161  Q
    |||||||||||||||| ||||| ||||||||| ||| ||||||||    
T  11134290 tttgacatgtttggattttctcgagtagaattaattatgcctcca 11134334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 35439065 - 35439141
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttg 191  Q
    ||||| |||||||||||||| ||||||| ||||| |||| | ||| |||  | ||||||| ||||||||| ||||||    
T  35439065 attttaacatgtttggatgtcctcaagtggaatttatttcgactctagatttcattctaaattgaagctagaatttg 35439141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 37121565 - 37121597
Alignment:
Q  145 aattgattttgcctccagaaatgattctaactt 177  Q
    ||||||||||| |||||||||||||||||||||    
T  37121565 aattgattttgactccagaaatgattctaactt 37121597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 38822354 - 38822278
Alignment:
Q  161 agaaatgattctaacttgaagctacaatttggagcatttacctatataattgattttccgcctctaatttattgttc 237  Q
    |||| |||||||| |||||| ||| |||||||||  ||||||| || ||||||||||   |||| ||||||||||||    
T  38822354 agaattgattctagcttgaatctagaatttggagtttttacctttacaattgatttttaacctcaaatttattgttc 38822278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 195
Target Start/End: Original strand, 40881049 - 40881129
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagc 195  Q
    ||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||| ||| ||||| ||| |||||||    
T  40881049 attttgacatgtttgcaagttctaaagtagaattgattttgcctccagaaatgattctatcttcaagctgcaacttggagc 40881129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 115 - 212
Target Start/End: Original strand, 11038132 - 11038229
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagcatttacctatataattg 212  Q
    |||||||||||||||||||||||| | | || |||||||| ||||||||  ||||||||||||||||||| |||||||||  |||||||  |||||||    
T  11038132 attttgacatgtttggatgttctcgaatggagttgatttttcctccagagttgattctaacttgaagctaaaatttggaggttttacctccataattg 11038229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 163
Target Start/End: Original strand, 41614735 - 41614842
Alignment:
Q  55 agtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgatttt 154  Q
    |||||||||||| || || || || ||||  |||||||| ||||| |||| |||||  | |||||||| |||||||||| | ||||||||||||||||||    
T  41614735 agtgtatgtttggttccatttgtgtaggagccaaaattgattctagaggtataaaat-tgattttgacttgtttggatggtttcaagtagaattgatttt 41614833  T
Q  155 gcctccaga 163  Q
    |||||||||    
T  41614834 gcctccaga 41614842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 5997418 - 5997343
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaattt 190  Q
    ||||||||||||||||||||| |  |||| ||||||||||||||| | || |||||||||||||||| || |||||    
T  5997418 attttgacatgtttggatgtttttgagtaaaattgattttgcctctaaaagtgattctaacttgaagttagaattt 5997343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 195
Target Start/End: Original strand, 32056259 - 32056394
Alignment:
Q  58 gtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgattttgcc 157  Q
    ||||||||| ||||||||||| ||||| |||||||| ||||| | ||||| || |    ||||||| |||||| || |||  |||| |||||||||| ||    
T  32056259 gtatgtttggtttcacttttgaaggaaccaaaattgattctagatgtgtagaacaga--tttgacaagtttggttgctctatagtaaaattgattttacc 32056356  T
Q  158 tccagaaatgattctaacttgaagctacaatttggagc 195  Q
    |||| || |||||||||||| |||||| || |||||||    
T  32056357 tccataattgattctaactttaagctagaaattggagc 32056394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 186
Target Start/End: Original strand, 35495151 - 35495280
Alignment:
Q  55 agtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgatttt 154  Q
    |||||||||||| || ||||||||||| |  |||||||| ||||| | ||||| ||  | |||||||||||||| | |  ||| || ||||||| |||||    
T  35495151 agtgtatgtttggttccacttttggagcacccaaaattgattctacaagtgtagaat-tgattttgacatgttttgtttctctaaattagaattaatttt 35495249  T
Q  155 gcctccagaaatgattctaacttgaagctaca 186  Q
    ||||| |||| ||||||| |||||||||||||    
T  35495250 gcctctagaattgattct-acttgaagctaca 35495280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 29979552 - 29979506
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctcca 161  Q
    |||||||||||||||| || ||||||||||||||| |||||||||||    
T  29979552 attttgacatgtttggttggtctcaagtagaattggttttgcctcca 29979506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 195
Target Start/End: Original strand, 8252747 - 8252827
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaa-cttgaagctacaatttggagc 195  Q
    |||||||||||||||| |||| | |||||||||||||||||| || |||  | ||||||| ||| |||||||||||||||||    
T  8252747 attttgacatgtttggctgtttt-aagtagaattgattttgcttcgagagtttattctaaactttaagctacaatttggagc 8252827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 13929842 - 13929765
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcc-tccagaaatgattctaacttgaagctacaatttg 191  Q
    |||||||||||||||||||||||| ||||||||||  |||||| | | ||| ||| |||||| |||||||| ||||||    
T  13929842 attttgacatgtttggatgttctcgagtagaattgtctttgccttacggaattgactctaacgtgaagctagaatttg 13929765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 36448003 - 36447962
Alignment:
Q  117 tttgacatgtttggatgttctcaagtagaattgattttgcct 158  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  36448003 tttgacatgtttggatgttctcgggtagaattgattttgcct 36447962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 38386309 - 38386356
Alignment:
Q  116 ttttgacatgtttggatgttctcaagtagaattgattttgcctccaga 163  Q
    |||||||||||||| |||||||| | || |||||||||||||||||||    
T  38386309 ttttgacatgtttgaatgttctcgaataaaattgattttgcctccaga 38386356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 34469252 - 34469301
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaa 164  Q
    |||||||||||||| |||||||||||||| |||| |||||| || |||||    
T  34469252 attttgacatgttttgatgttctcaagtataattaattttgacttcagaa 34469301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 156
Target Start/End: Complemental strand, 38524147 - 38524107
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgc 156  Q
    ||||||||||||||||| ||||||||||| ||||||||||||    
T  38524147 attttgacatgtttgga-gttctcaagtaaaattgattttgc 38524107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 184
Target Start/End: Complemental strand, 39648475 - 39648406
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagcta 184  Q
    ||||||||| |||||||||  |||||  ||||||||||||  ||| |||| |||||||||||| ||||||    
T  39648475 attttgacaagtttggatgccctcaatcagaattgattttctctctagaactgattctaactttaagcta 39648406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 115 - 181
Target Start/End: Original strand, 25318997 - 25319063
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaag 181  Q
    |||||||||||||||| || |||| |||||||||||||||| |||||||| ||||||||||||||||    
T  25318997 attttgacatgtttggttgctctcgagtagaattgattttgtctccagaattgattctaacttgaag 25319063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 184
Target Start/End: Complemental strand, 29468829 - 29468698
Alignment:
Q  52 attagtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattatt-ttgacatgtttggatgttctcaagtagaattga 150  Q
    |||||||||||||| |||  ||| |||||||||  ||||||| || || ||||||| ||  ||| | |||||||||||||||||||||||||||||  ||    
T  29468829 attagtgtatgtttaattcgactcttggaggaagaaaaattgattttacaggtgtagaa--ttagtattgacatgtttggatgttctcaagtagaaccga 29468732  T
Q  151 ttttgcctccagaaatgattctaacttgaagcta 184  Q
    |||||| |||| || |||||||| ||||||||||    
T  29468731 ttttgcatccataattgattctatcttgaagcta 29468698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 2171738 - 2171814
Alignment:
Q  116 ttttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttgg 192  Q
    ||||||||||||||||||||||| |||| |||||| |||||| || ||| |||||| |||||||||||| |||||||    
T  2171738 ttttgacatgtttggatgttctcgagtaaaattgactttgcccccggaattgattcgaacttgaagctagaatttgg 2171814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 170
Target Start/End: Original strand, 2635054 - 2635168
Alignment:
Q  55 agtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgatttt 154  Q
    |||||||||||| |||||||||| |||| | |||||||| ||||| | |||| |||| | |||||||||||||||  || | | |||||||| |||||||    
T  2635054 agtgtatgtttggtttcacttttagagggaccaaaattgattctagaagtgt-aaaattgattttgacatgtttgattgcttttaagtagaactgatttt 2635152  T
Q  155 gcctccagaaatgatt 170  Q
    |||||||||| |||||    
T  2635153 gcctccagaattgatt 2635168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 217
Target Start/End: Original strand, 8330013 - 8330167
Alignment:
Q  63 tttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaatta--ttttgacatgtttggatgttctcaagtagaattgattttgcctcc 160  Q
    |||| |||||||| |||||||  || ||||| ||||| |||||  || |||||  |||| |||||||||| || ||||||||| |||||||| |||||||    
T  8330013 tttggtttcacttctggaggagccagaattgattctagaggtg--aataattaattttttacatgtttggttgctctcaagtaaaattgattctgcctcc 8330110  T
Q  161 agaaatgattctaacttgaagctacaatttggagcatttacctatataattgatttt 217  Q
    | ||  |||||||||||||||||| || ||||||| |||   | |||||||||||||    
T  8330111 ataatggattctaacttgaagctagaaattggagcttttgattctataattgatttt 8330167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 18597009 - 18597065
Alignment:
Q  135 tctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttg 191  Q
    ||||||||| |||||||||| ||||||||| ||||||||||||||||||| ||||||    
T  18597009 tctcaagtaaaattgattttacctccagaattgattctaacttgaagctataatttg 18597065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 33560706 - 33560646
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaac 175  Q
    |||||||||||||||| || |||| |||||||||||||||||||| |||| ||||||||||    
T  33560706 attttgacatgtttggttgctctcgagtagaattgattttgcctctagaattgattctaac 33560646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 194
Target Start/End: Complemental strand, 9082953 - 9082879
Alignment:
Q  119 tgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggag 194  Q
    ||||||||||||||||||| || |||||||||||||||| || ||| |||||||||||||||  || |||||||||    
T  9082953 tgacatgtttggatgttctgaaatagaattgattttgcc-cctgaattgattctaacttgaacttagaatttggag 9082879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 195
Target Start/End: Complemental strand, 2206473 - 2206399
Alignment:
Q  121 acatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagc 195  Q
    ||||||||| |||||||  || |||||||||||| |||||| || |||||||| |||||||||| || |||||||    
T  2206473 acatgtttgaatgttctagagcagaattgatttttcctccaaaattgattctagcttgaagctaaaaattggagc 2206399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 47596490 - 47596440
Alignment:
Q  55 agtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtg 105  Q
    ||||||||| || |||||||||||||||||||||||||| || ||||||||    
T  47596490 agtgtatgtatggtttcacttttggaggaatcaaaattgattttaaaggtg 47596440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 11271641 - 11271604
Alignment:
Q  147 ttgattttgcctccagaaatgattctaacttgaagcta 184  Q
    |||||||||||||||||| |||||||||||||||||||    
T  11271641 ttgattttgcctccagaattgattctaacttgaagcta 11271604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 26617443 - 26617519
Alignment:
Q  140 agtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagcatttacctatataattgatttt 217  Q
    |||||||||||||||||||||| |||||||||| ||||||||||| ||| || ||| |||   |||| ||||||||||    
T  26617443 agtagaattgattttgcctccaaaaatgattct-acttgaagctagaatctgtagcttttgattataaaattgatttt 26617519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 54705521 - 54705457
Alignment:
Q  120 gacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagcta 184  Q
    ||||||||||| || || |||||| ||||||||||||||| | || |||| ||||||||||||||    
T  54705521 gacatgtttggttgctcacaagtataattgattttgcctcaataattgatactaacttgaagcta 54705457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 472001 - 471938
Alignment:
Q  116 ttttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttga 179  Q
    |||||||||||||| ||||| || ||||||||||||||| ||||   || ||||||||||||||    
T  472001 ttttgacatgtttgaatgttgtcgagtagaattgattttacctctgcaactgattctaacttga 471938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 1455692 - 1455633
Alignment:
Q  123 atgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagc 182  Q
    ||||||||||||| |||||||||| |||||||||||||| || ||||   ||||||||||    
T  1455692 atgtttggatgttttcaagtagaactgattttgcctccaaaattgatataaacttgaagc 1455633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 32818480 - 32818430
Alignment:
Q  140 agtagaattgattttgcctccagaaatgattctaacttgaagctacaatttg 191  Q
    ||||||||||||||||||||||||| ||||||| | ||||||||| ||||||    
T  32818480 agtagaattgattttgcctccagaattgattct-atttgaagctagaatttg 32818430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 184
Target Start/End: Complemental strand, 52063156 - 52063117
Alignment:
Q  145 aattgattttgcctccagaaatgattctaacttgaagcta 184  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  52063156 aattgattttgcctatagaaatgattctaacttgaagcta 52063117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 44845726 - 44845772
Alignment:
Q  145 aattgattttgcctccagaaatgattctaacttgaagctacaatttg 191  Q
    |||||||||| ||||||||| ||||||||||||||||| | ||||||    
T  44845726 aattgatttttcctccagaattgattctaacttgaagcaataatttg 44845772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 51093208 - 51093309
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagcatttacctatataattgat 214  Q
    |||||||||||||| || |||||    || |||| |||||||||| | || |||||||||| |||||||| |||||||||| ||| ||| || |||||||    
T  51093208 attttgacatgttttgacgttcttgcataaaatttattttgcctctataattgattctaac-tgaagctagaatttggagcttttgcctctacaattgat 51093306  T
Q  215 ttt 217  Q
    |||    
T  51093307 ttt 51093309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 22250180 - 22250217
Alignment:
Q  119 tgacatgtttggatgttctcaagtagaattgattttgc 156  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  22250180 tgacatgtttggttgttctcaattagaattgattttgc 22250217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 22683813 - 22683882
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagcta 184  Q
    ||||||||||||| |  |||| |  |||| |||||||||||||||||||| | ||| |||||||||||||    
T  22683813 attttgacatgttggtttgtttttgagtaaaattgattttgcctccagaattaattataacttgaagcta 22683882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 130
Target Start/End: Complemental strand, 50375644 - 50375572
Alignment:
Q  55 agtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttgg 130  Q
    |||||||||||||||  ||||||||| || ||||||||| || || ||||||| ||   |||||||||||||||||    
T  50375644 agtgtatgtttgattctacttttggatgagtcaaaattgattttagaggtgtataa---tattttgacatgtttgg 50375572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 4451413 - 4451469
Alignment:
Q  122 catgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttg 178  Q
    ||||||||||| ||||| |||||| ||| ||||| |||| ||||| |||||||||||    
T  4451413 catgtttggatattctcgagtagacttgcttttgactccggaaataattctaacttg 4451469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 9134560 - 9134635
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttg 191  Q
    |||||||||||||| | |||| || ||| ||||||||||| | ||||||| |||| || ||||||||||| ||||||    
T  9134560 attttgacatgtttagttgttatcgagtggaattgattttacttccagaattgatcct-acttgaagctaaaatttg 9134635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 26617193 - 26617233
Alignment:
Q  150 attttgcctccagaaatgattctaacttgaagctacaattt 190  Q
    |||||||||||| || ||||||||||||||| |||||||||    
T  26617193 attttgcctccaaaattgattctaacttgaaactacaattt 26617233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 35995178 - 35995246
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagct 183  Q
    |||||||||| |  ||||| | || |||| |||||||||| ||| ||||| ||||||||||||||||||    
T  35995178 attttgacatatgaggatgatttctagtataattgattttaccttcagaactgattctaacttgaagct 35995246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 49138891 - 49138851
Alignment:
Q  121 acatgtttggatgttctcaagtagaattgattttgcctcca 161  Q
    |||||||||| |||| ||||||| |||||||||||||||||    
T  49138891 acatgtttggttgttttcaagtaaaattgattttgcctcca 49138851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 11510904 - 11510982
Alignment:
Q  116 ttttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggag 194  Q
    |||||| ||||||||||||| || |||||||||||||||||||||| |  |||||||| |||||||||| |||||||||    
T  11510904 ttttgatatgtttggatgttttcgagtagaattgattttgcctccatatttgattctatcttgaagctagaatttggag 11510982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 88 - 190
Target Start/End: Complemental strand, 33503010 - 33502909
Alignment:
Q  88 aaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaa 187  Q
    |||||| |||| |||||||||||  | |||||||||||||||| || |||| |||| || ||||||||| ||||||| ||||||||||||||||||| ||    
T  33503010 aaattgattctgaaggtgtaaaat-tgattttgacatgtttggttgctctcgagtaaaactgattttgcatccagaattgattctaacttgaagctagaa 33502912  T
Q  188 ttt 190  Q
    |||    
T  33502911 ttt 33502909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 191
Target Start/End: Original strand, 37561599 - 37561732
Alignment:
Q  56 gtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgattttg 155  Q
    ||||||||||| ||||| ||||||| ||  |  ||||| ||||| ||||||||||  | ||||||||||||||| || | |||||||||| |||||||||    
T  37561599 gtgtatgtttggtttcaattttggatgaggcggaattgattctagaggtgtaaaat-tgattttgacatgtttgaat-tcctcaagtagatttgattttg 37561696  T
Q  156 cctccagaaatgattctaacttgaagctacaatttg 191  Q
    |||| | || ||||||||||||||| |||| |||||    
T  37561697 cctctataattgattctaacttgaaactacgatttg 37561732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 4908739 - 4908815
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttg 191  Q
    ||||||||||||||| ||||| || ||||||||||||||||||| | ||| | |||||||||| |||||| ||||||    
T  4908739 attttgacatgtttgtatgttttcgagtagaattgattttgccttccgaatttattctaacttaaagctaaaatttg 4908815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 36987247 - 36987172
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaattt 190  Q
    ||||||||||||||||||  | |  |||| |||||||||||| |||||||||||||||||||||||| || |||||    
T  36987247 attttgacatgtttggattcttttgagtataattgattttgcttccagaaatgattctaacttgaagttagaattt 36987172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 7630366 - 7630427
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaact 176  Q
    |||||||||||||||| || | |||||||||||||||||||||||||| |  ||||||||||    
T  7630366 attttgacatgtttggttgctttcaagtagaattgattttgcctccaggatagattctaact 7630427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 245
Target Start/End: Complemental strand, 38129591 - 38129472
Alignment:
Q  125 gtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagcatttacctatataattgattttccgcctc 224  Q
    |||||||  ||||| ||||||||| ||||||| |  |||| |||||||||||  |||||||||||| |||| ||| || ||  ||||||||||  |||||    
T  38129591 gtttggactttctcgagtagaattcattttgcttttagaattgattctaactcaaagctacaatttcgagcttttgcc-atgcaattgatttttagcctc 38129493  T
Q  225 taatttattgttcttctcact 245  Q
     |||||||||||| |||||||    
T  38129492 aaatttattgttcatctcact 38129472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 237
Target Start/End: Original strand, 5977166 - 5977253
Alignment:
Q  151 ttttgcctccagaaatgattctaacttgaagctacaatttggagc-atttacctatataattgattttccgcctctaatttattgttc 237  Q
    ||||||||||| || ||||||||||||||||||| ||||||||||  ||| ||| |||| ||||||||   |||| ||||||||||||    
T  5977166 ttttgcctccataattgattctaacttgaagctaaaatttggagctttttgcctctatatttgatttttaacctcaaatttattgttc 5977253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 14110638 - 14110692
Alignment:
Q  126 tttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaa 180  Q
    ||||||||||||||||| ||||||| |||||||  |||| |||||||||||||||    
T  14110638 tttggatgttctcaagttgaattgaatttgcctttagaattgattctaacttgaa 14110692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 195
Target Start/End: Original strand, 44439172 - 44439283
Alignment:
Q  86 caaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgattttgcctccagaaa---tgattctaacttgaagc 182  Q
    |||||||| ||||||||||||  ||  | |||||||||||||||| ||  ||| || | ||||||||||||||| ||||    |||||||||||||||||    
T  44439172 caaaattgattctaaaggtgttgaat-taattttgacatgtttggttgccctccaggaaaattgattttgcctctagaagaattgattctaacttgaagc 44439270  T
Q  183 tacaatttggagc 195  Q
    || ||||||||||    
T  44439271 taaaatttggagc 44439283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 3476545 - 3476496
Alignment:
Q  135 tctcaagtagaattgattttgcctccagaaatgattctaacttgaagcta 184  Q
    |||| |||| |||||||||||||||||||| |||||||||||| ||||||    
T  3476545 tctcgagtaaaattgattttgcctccagaattgattctaacttaaagcta 3476496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 1101946 - 1102030
Alignment:
Q  108 aaaaattattttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttgg 192  Q
    |||| ||||||||| || ||||| ||  ||| ||||||||||||||||||||| ||  |||||||||||| || ||| |||||||    
T  1101946 aaaatttattttgaaatttttggttgcactcgagtagaattgattttgcctcctgatttgattctaacttaaaactagaatttgg 1102030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 680414 - 680344
Alignment:
Q  113 ttattttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagcta 184  Q
    |||||||||||||||| | || | || | ||||| ||||||||||||||||| ||||||| |||||||||||    
T  680414 ttattttgacatgtttagttgctttcgaatagaactgattttgcctccagaattgattct-acttgaagcta 680344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 154
Target Start/End: Complemental strand, 39702567 - 39702528
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgatttt 154  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  39702567 attttgacatgtttgtatgttctcgagtagaattgatttt 39702528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 152
Target Start/End: Original strand, 9943318 - 9943410
Alignment:
Q  59 tatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgatt 152  Q
    |||||||| || ||| ||||||| || |||||||| |||| ||||||| |||| | ||||| |||||||||| || |||||  |||||||||||    
T  9943318 tatgtttggttccacatttggagcaaccaaaattgattctgaaggtgt-aaaattgattttaacatgtttggttgctctcacttagaattgatt 9943410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 42982443 - 42982519
Alignment:
Q  53 ttagtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttgg 130  Q
    |||||||||||||| || |||||||||||||||| |||||  |||||||  ||| | || | ||||||||||||||||    
T  42982443 ttagtgtatgtttggttccacttttggaggaatccaaattaattctaaacatgt-agaactgattttgacatgtttgg 42982519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 2002805 - 2002762
Alignment:
Q  140 agtagaattgattttgcctccagaaatgattctaacttgaagcta 184  Q
    ||||||||||||||||||||||||  ||||||| |||||||||||    
T  2002805 agtagaattgattttgcctccagacctgattct-acttgaagcta 2002762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 7629845 - 7629889
Alignment:
Q  140 agtagaattgattttgcctccagaaatgattctaacttgaagcta 184  Q
    ||||||||| | ||| ||||||||| |||||||||||||||||||    
T  7629845 agtagaattcacttttcctccagaattgattctaacttgaagcta 7629889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 33502223 - 33502255
Alignment:
Q  141 gtagaattgattttgcctccagaaatgattcta 173  Q
    |||||||||||||||||||||||| ||||||||    
T  33502223 gtagaattgattttgcctccagaattgattcta 33502255  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 36979122 - 36979166
Alignment:
Q  140 agtagaattgattttgcctccagaaatgattctaacttgaagcta 184  Q
    ||||||||| ||||||||| ||||| |||| ||||||||||||||    
T  36979122 agtagaatttattttgccttcagaattgatactaacttgaagcta 36979166  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 217
Target Start/End: Complemental strand, 40959770 - 40959682
Alignment:
Q  129 ggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagcatttacctatataattgatttt 217  Q
    ||||||||||  ||||||||||| | | ||| | || | |||||||||||| |||||| |||||||| |||  || |||||||||||||    
T  40959770 ggatgttctcttgtagaattgatgtagtctctaaaattaattctaacttgatgctacagtttggagcttttgtctctataattgatttt 40959682  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 217
Target Start/End: Complemental strand, 48635322 - 48635225
Alignment:
Q  119 tgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagcatttacctatataattgatttt 217  Q
    ||||||||||||||||||||||||||||||| |||||||| || || |||||||||||| |  ||| |||||| ||| |||  || |||||||||||||    
T  48635322 tgacatgtttggatgttctcaagtagaattggttttgcct-cataattgattctaacttcagcctagaatttgaagcttttgtctctataattgatttt 48635225  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 115 - 184
Target Start/End: Complemental strand, 32088708 - 32088640
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagcta 184  Q
    |||||||||||||||| || |||||||||||||||||||| ||| || || |||||||||||||||||||    
T  32088708 attttgacatgtttggttgctctcaagtagaattgatttt-cctacaaaattgattctaacttgaagcta 32088640  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 195
Target Start/End: Complemental strand, 51158551 - 51158469
Alignment:
Q  113 ttattttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagc 195  Q
    |||||||| |||||||||||||||||   ||||||||||||||||||||| | | ||| ||||||||||  | ||||||||||    
T  51158551 ttattttggcatgtttggatgttctcggatagaattgattttgcctccaggatttattttaacttgaagaaagaatttggagc 51158469  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 184
Target Start/End: Original strand, 6021695 - 6021822
Alignment:
Q  57 tgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaa-aatt-attttgacatgtttggatgttctcaagtagaattgatttt 154  Q
    |||||||||| || ||||||||||||| | ||| ||| ||||| ||||||| || |||| ||||||||| |||||  || | ||||||||||||||||||    
T  6021695 tgtatgtttggttccacttttggaggagttaaa-ttgattctagaggtgtagaataattgattttgacaagtttgattgatttcaagtagaattgatttt 6021793  T
Q  155 gcctccagaaatgattctaacttgaagcta 184  Q
    ||||| ||||  |||||| |||||||||||    
T  6021794 gcctctagaatcgattct-acttgaagcta 6021822  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 15452436 - 15452510
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatt 189  Q
    |||||||||| ||||||||||||| ||||||||||||||||  || |||| || |||||| ||||| ||| ||||    
T  15452436 attttgacatctttggatgttctcgagtagaattgattttgtatcaagaattgcttctaatttgaaactagaatt 15452510  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 194
Target Start/End: Original strand, 41516883 - 41517016
Alignment:
Q  60 atgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgattttgcctc 159  Q
    ||||||| || ||||||||||||| |||||||   ||||| ||||||| ||  | ||| |||||| || | ||||| || ||||||||||||||||| |     
T  41516883 atgtttggttccacttttggaggagtcaaaatccattctagaggtgtagaat-tgattatgacatcttggaatgttttcgagtagaattgattttgcgtt 41516981  T
Q  160 cagaaatgattctaacttgaagctacaatttggag 194  Q
     | || |||||||||||||||| || |||||||||    
T  41516982 taaaattgattctaacttgaagttagaatttggag 41517016  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 646134 - 646185
Alignment:
Q  119 tgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgatt 170  Q
    |||||||||||| |||| |  ||||||||||||||||||||||||| |||||    
T  646134 tgacatgtttggttgtttttgagtagaattgattttgcctccagaattgatt 646185  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 154
Target Start/End: Complemental strand, 18325226 - 18325187
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgatttt 154  Q
    |||||||||||||||||| ||||| |||||||||||||||    
T  18325226 attttgacatgtttggattttctcgagtagaattgatttt 18325187  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 20721108 - 20721057
Alignment:
Q  56 gtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgta 107  Q
    ||||||||||  || ||||||||||||||||||||||| ||||| |||||||    
T  20721108 gtgtatgttttgttccacttttggaggaatcaaaattgattctagaggtgta 20721057  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 404187 - 404121
Alignment:
Q  117 tttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagct 183  Q
    |||||||||||| |||||| |  ||| ||||||||||| |||| |||| ||||| ||||||||||||    
T  404187 tttgacatgtttagatgttttttagttgaattgattttacctcaagaattgattttaacttgaagct 404121  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 191
Target Start/End: Original strand, 5268194 - 5268244
Alignment:
Q  141 gtagaattgattttgcctccagaaatgattctaacttgaagctacaatttg 191  Q
    |||||||| |||||||||||| || ||||||||||| ||||||| ||||||    
T  5268194 gtagaattaattttgcctccaaaattgattctaactcgaagctagaatttg 5268244  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 5407777 - 5407819
Alignment:
Q  142 tagaattgattttgcctccagaaatgattctaacttgaagcta 184  Q
    ||||||||||||||||| |||| || |||||||||||||||||    
T  5407777 tagaattgattttgcctgcagagataattctaacttgaagcta 5407819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 52013594 - 52013545
Alignment:
Q  134 ttctcaagtagaattgattttgcctccagaaatgattctaacttgaagcta 184  Q
    ||||| |||| ||||||||||||||||| || |||||||||||||||||||    
T  52013594 ttctccagtaaaattgattttgcctcca-aattgattctaacttgaagcta 52013545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 12655194 - 12655278
Alignment:
Q  115 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttggagcattt 199  Q
    |||||||||||||| | || | |  |||||| | || |||||||| |||| | ||||||||||||||||| |||||| |||||||    
T  12655194 attttgacatgtttagttgctttggagtagattcgactttgcctctagaattaattctaacttgaagctagaatttgtagcattt 12655278  T

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Target: scaffold0168 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 184
Target Start/End: Original strand, 31718 - 31844
Alignment:
Q  56 gtgtatgtttgatttcacttttggaggaatcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttggatgttctcaagtagaattgattttg 155  Q
    ||||||||||| || ||||| | |||  | |||||||| ||||| ||||||| ||  | ||| |||||||||||| |||| || |||| |||||||| ||    
T  31718 gtgtatgtttggttccacttctagagtgaccaaaattgattctagaggtgtagaat-tgattctgacatgtttggttgttgtcgagtaaaattgattctg 31816  T
Q  156 cctccagaaatgattctaacttgaagcta 184  Q
    |||||| || ||||| | |||||||||||    
T  31817 cctccaaaattgattat-acttgaagcta 31844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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