View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5215_low_11 (Length: 245)

Name: NF5215_low_11
Description: NF5215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5215_low_11
NF5215_low_11
[»] chr7 (9 HSPs)
chr7 (8-240)||(46524580-46524812)
chr7 (31-240)||(46479107-46479316)
chr7 (31-240)||(46520537-46520746)
chr7 (31-240)||(46490309-46490518)
chr7 (7-240)||(46532132-46532365)
chr7 (31-237)||(46326455-46326661)
chr7 (8-243)||(46322744-46322979)
chr7 (54-243)||(46494630-46494819)
chr7 (50-243)||(46516915-46517108)
[»] chr3 (1 HSPs)
chr3 (31-138)||(7475308-7475415)


Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 46524580 - 46524812
Alignment:
Q  8 tcacctactatgtgaaacgccgagtagctgctaatggaagccggagcatcggtatcgccgtagccacgtagatctggagcaacagcacggtagcagaggg 107  Q
    |||||||||||||||||  | | |||||| ||||  |||| |||||||||||| || || |||||||| ||||| ||||||||||||||||||| |||||    
T  46524580 tcacctactatgtgaaaacctgtgtagctactaactgaagacggagcatcggtgtcaccatagccacggagatcgggagcaacagcacggtagccgaggg 46524679  T
Q  108 agctgagagttacaatctggtggcgccatgaataccagagttcgggaaagccatgaaggaacaagaccactggaccttcttttcctttttcagcaatatg 207  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||| || || |||||||| ||||| |||||||||||    
T  46524680 agctgagagctacaatctggtggcgccatgaataccagagttctgggaagccatgaaggaacaagacaacaggtccttctttacctttctcagcaatatg 46524779  T
Q  208 cattttgatgccattcacttccactgttctgtg 240  Q
    ||||||||| ||||||||||||||| |||||||    
T  46524780 cattttgattccattcacttccactcttctgtg 46524812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 31 - 240
Target Start/End: Original strand, 46479107 - 46479316
Alignment:
Q  31 gtagctgctaatggaagccggagcatcggtatcgccgtagccacgtagatctggagcaacagcacggtagcagagggagctgagagttacaatctggtgg 130  Q
    ||||||||| || ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| | ||||||||  ||||   |||||||||||    
T  46479107 gtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaagatctggagcaacagcacggtaaccgagggagccaagagcagcaatctggtgg 46479206  T
Q  131 cgccatgaataccagagttcgggaaagccatgaaggaacaagaccactggaccttcttttcctttttcagcaatatgcattttgatgccattcacttcca 230  Q
    |||||||||||||||||||| || ||||| ||||||||||| || |||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  46479207 cgccatgaataccagagttcagggaagccgtgaaggaacaaaacaactggaccttcttttcctttctctgcaatatgcattttgatgccattcacttcca 46479306  T
Q  231 ctgttctgtg 240  Q
    | ||||||||    
T  46479307 ccgttctgtg 46479316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 31 - 240
Target Start/End: Original strand, 46520537 - 46520746
Alignment:
Q  31 gtagctgctaatggaagccggagcatcggtatcgccgtagccacgtagatctggagcaacagcacggtagcagagggagctgagagttacaatctggtgg 130  Q
    ||||||||| || ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| | ||||||||  ||||   |||||||||||    
T  46520537 gtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaagatctggagcaacagcacggtaaccgagggagccaagagcagcaatctggtgg 46520636  T
Q  131 cgccatgaataccagagttcgggaaagccatgaaggaacaagaccactggaccttcttttcctttttcagcaatatgcattttgatgccattcacttcca 230  Q
    |||||||||||||||||||| || ||||| ||||||||||| || |||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  46520637 cgccatgaataccagagttcagggaagccgtgaaggaacaaaacaactggaccttcttttcctttctctgcaatatgcattttgatgccattcacttcca 46520736  T
Q  231 ctgttctgtg 240  Q
    | ||||||||    
T  46520737 ccgttctgtg 46520746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 31 - 240
Target Start/End: Original strand, 46490309 - 46490518
Alignment:
Q  31 gtagctgctaatggaagccggagcatcggtatcgccgtagccacgtagatctggagcaacagcacggtagcagagggagctgagagttacaatctggtgg 130  Q
    |||||| |||||||| |||||||||||||| ||||| || ||||| ||||||||||||||||| ||||| | ||||||||  ||||    ||||||||||    
T  46490309 gtagctactaatggaggccggagcatcggtgtcgccataaccacggagatctggagcaacagcgcggtaaccgagggagccaagagcagaaatctggtgg 46490408  T
Q  131 cgccatgaataccagagttcgggaaagccatgaaggaacaagaccactggaccttcttttcctttttcagcaatatgcattttgatgccattcacttcca 230  Q
    |||||||||||||||||||| || |||||||||||||||| ||| || || |||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  46490409 cgccatgaataccagagttcagggaagccatgaaggaacaggacaacgggtccttctttacctttctcagcaatatgcattttgatgccattcacttcca 46490508  T
Q  231 ctgttctgtg 240  Q
    ||||||||||    
T  46490509 ctgttctgtg 46490518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 46532132 - 46532365
Alignment:
Q  7 gtcacctactatgtgaaacgccgagtagctgctaatggaagccggagcatcggtatcgccgtagccacgtagatctggagcaacagcacggtagcagagg 106  Q
    ||||||||| ||||||||  | | ||||||||| || ||||  ||||| ||||| || || |||||||| |||||||||||||| || ||||| | ||||    
T  46532132 gtcacctacaatgtgaaaaccagtgtagctgcttattgaagatggagcctcggtgtcaccatagccacgcagatctggagcaacggcgcggtaaccgagg 46532231  T
Q  107 gagctgagagttacaatctggtggcgccatgaataccagagttcgggaaagccatgaaggaacaagaccactggaccttcttttcctttttcagcaatat 206  Q
    ||||  |||| |||||| |||||||||||||||||||||||||| || |||||||||||||||||||| || || |||||||||||||||||||||||||    
T  46532232 gagccaagagctacaatttggtggcgccatgaataccagagttctgggaagccatgaaggaacaagacaacaggtccttcttttcctttttcagcaatat 46532331  T
Q  207 gcattttgatgccattcacttccactgttctgtg 240  Q
    |||||||||| |||||||| ||||||||||||||    
T  46532332 gcattttgattccattcacctccactgttctgtg 46532365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 31 - 237
Target Start/End: Complemental strand, 46326661 - 46326455
Alignment:
Q  31 gtagctgctaatggaagccggagcatcggtatcgccgtagccacgtagatctggagcaacagcacggtagcagagggagctgagagttacaatctggtgg 130  Q
    ||||||||||||||||| |||| |||| || || || |||||||| ||||| ||||||||||||||||| | |||||| | |||||   |||||||||||    
T  46326661 gtagctgctaatggaagacggaacatctgtgtcaccatagccacggagatcgggagcaacagcacggtaaccgagggatccgagagccgcaatctggtgg 46326562  T
Q  131 cgccatgaataccagagttcgggaaagccatgaaggaacaagaccactggaccttcttttcctttttcagcaatatgcattttgatgccattcacttcca 230  Q
    ||||| || ||||||||||| |||||||| ||||||||||| || || || |||||||| ||||| |||||||||||||||||||| |||||||||||||    
T  46326561 cgccaagagtaccagagttcaggaaagccgtgaaggaacaaaacaacaggtccttctttacctttctcagcaatatgcattttgattccattcacttcca 46326462  T
Q  231 ctgttct 237  Q
    |||||||    
T  46326461 ctgttct 46326455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 8 - 243
Target Start/End: Complemental strand, 46322979 - 46322744
Alignment:
Q  8 tcacctactatgtgaaacgccgagtagctgctaatggaagccggagcatcggtatcgccgtagccacgtagatctggagcaacagcacggtagcagaggg 107  Q
    |||||||| ||||||||  | | ||||||||| || ||||  ||||| || || || || |||||||||||||| ||||| || || ||||||| ||| |    
T  46322979 tcacctacaatgtgaaaacctgtgtagctgcttattgaagatggagcctcagtgtcaccatagccacgtagatccggagctacggcgcggtagccgagag 46322880  T
Q  108 agctgagagttacaatctggtggcgccatgaataccagagttcgggaaagccatgaaggaacaagaccactggaccttcttttcctttttcagcaatatg 207  Q
    ||| |||||   |||||||||||||||| || ||||||||||| |||||||| ||||||||||| || || || |||||||| ||||| |||||||||||    
T  46322879 agccgagagccgcaatctggtggcgccaagagtaccagagttcaggaaagccgtgaaggaacaaaacaacaggtccttctttacctttctcagcaatatg 46322780  T
Q  208 cattttgatgccattcacttccactgttctgtgctc 243  Q
    ||||||||| ||||||||||||||| ||||||||||    
T  46322779 cattttgattccattcacttccactcttctgtgctc 46322744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 54 - 243
Target Start/End: Original strand, 46494630 - 46494819
Alignment:
Q  54 catcggtatcgccgtagccacgtagatctggagcaacagcacggtagcagagggagctgagagttacaatctggtggcgccatgaataccagagttcggg 153  Q
    |||| |||||||| || ||||| ||||| ||||| ||||| ||||| | ||| |||| |||||   |||||||||||||||| || ||||||||||| ||    
T  46494630 catcagtatcgccataaccacgaagatcgggagccacagcccggtaaccgagagagccgagagccgcaatctggtggcgccaagagtaccagagttcagg 46494729  T
Q  154 aaagccatgaaggaacaagaccactggaccttcttttcctttttcagcaatatgcattttgatgccattcacttccactgttctgtgctc 243  Q
     || || |||||||||| ||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  46494730 gaatccgtgaaggaacaggacaacaggtccttcttttcctttttcagcaatatgcattttgattccattcacttccactgttctgtgctc 46494819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 50 - 243
Target Start/End: Original strand, 46516915 - 46517108
Alignment:
Q  50 ggagcatcggtatcgccgtagccacgtagatctggagcaacagcacggtagcagagggagctgagagttacaatctggtggcgccatgaataccagagtt 149  Q
    |||||||| || || ||||||||||  ||||||||||| || |  |||||||  |||||||||||||  |||||||||||||||||||| ||||||| ||    
T  46516915 ggagcatcagtgtcaccgtagccacagagatctggagccacggtgcggtagccaagggagctgagagcaacaatctggtggcgccatgagtaccagattt 46517014  T
Q  150 cgggaaagccatgaaggaacaagaccactggaccttcttttcctttttcagcaatatgcattttgatgccattcacttccactgttctgtgctc 243  Q
    | ||||| |||||||||||||| || | ||| |||||||||||||| || || | |||||||||||| ||||||||||||||||||||||||||    
T  46517015 caggaaaaccatgaaggaacaatactattggtccttcttttcctttctctgcgacatgcattttgattccattcacttccactgttctgtgctc 46517108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 7475415 - 7475308
Alignment:
Q  31 gtagctgctaatggaagccggagcatcggtatcgccgtagccacgtagatctggagcaacagcacggtagcagagggagctgagagttacaatctggtgg 130  Q
    ||||||||| || ||||  |||| |||||| || || |||||||| ||||| | ||| ||  || |||||| |||||||||||||| || ||||||||||    
T  7475415 gtagctgcttattgaagatggagaatcggtgtcaccatagccacggagatcagtagccacgacatggtagccgagggagctgagagctataatctggtgg 7475316  T
Q  131 cgccatga 138  Q
    ||||||||    
T  7475315 cgccatga 7475308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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