View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5215_low_16 (Length: 202)
Name: NF5215_low_16
Description: NF5215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5215_low_16 |
 | |
|
| [»] scaffold0131 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 44014530 - 44014701
Alignment:
| Q |
19 |
attcccttccaaaagttgtctaagattaccattttggataaagttatagagaagtagcttaacactcccattagaacaataacctatgagcctcacaatg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44014530 |
attcccttccaaaagttgtctaagattaccattttggataaagttatagagaagtagcttaacactcccattagaacaataacctatgagcctcacaatg |
44014629 |
T |
|
| Q |
119 |
ttcctatgccgaatgtagccgagaatctgaatctcagcagcaaaagaatcgaccatttcatctcctttgctt |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44014630 |
ttcctatgccgaatgtagccgagaatctgaatctcagcagcaaaagaatcgaccatttcatctcctttgctt |
44014701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0131 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0131
Description:
Target: scaffold0131; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 63 - 118
Target Start/End: Original strand, 12693 - 12748
Alignment:
| Q |
63 |
tatagagaagtagcttaacactcccattagaacaataacctatgagcctcacaatg |
118 |
Q |
| |
|
|||||||||| ||||||| | |||||||||||||||||| ||||||| || ||||| |
|
|
| T |
12693 |
tatagagaagaagcttaatattcccattagaacaataacttatgagcgtcgcaatg |
12748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 28754674 - 28754626
Alignment:
| Q |
61 |
gttatagagaagtagcttaacactcccattagaacaataacctatgagc |
109 |
Q |
| |
|
|||||||||||| ||||||| | ||||||||||| |||||| ||||||| |
|
|
| T |
28754674 |
gttatagagaagaagcttaatattcccattagaagaataacttatgagc |
28754626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University