View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5215_low_5 (Length: 320)
Name: NF5215_low_5
Description: NF5215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5215_low_5 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 33980889 - 33981085
Alignment:
| Q |
1 |
gcataaactatagaccatggtttggcagcaagaaagtcagtatcaaaaagtatactatatctgtacaatacttgtgcaaatggattcccttgtgagagaa |
100 |
Q |
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| T |
33980889 |
gcataagctataaagcatggtttggcagcaagaaagtcagtatcaaaaagtatactatatctgaacaatacttgtgcaaatggattcccttgtgagagaa |
33980988 |
T |
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| Q |
101 |
agagacttccaatcctagaaaatcattgaggggtcatatttctttgattatgaagatgtcctcaaggtattggtttcctgaattaatctcataaagg |
197 |
Q |
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| T |
33980989 |
agagacttccaatcctagaaaatcattgaggggtcatatttctttgattatgaagatgtcctcaaggcattggtttactgaattaatctcagaaagg |
33981085 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 320
Target Start/End: Original strand, 15951265 - 15951348
Alignment:
| Q |
238 |
agaagctaaactaaccctctcaaatttgtatcagcgagtatcgaac-tgaatccttgaggatgaacatactcccaaatctcaag |
320 |
Q |
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| T |
15951265 |
agaagctaaactaaccctctcaaattggtaccagagagaattgaacatgagaccttgaggaggagcacactcccaaatctcaag |
15951348 |
T |
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