View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5215_low_6 (Length: 315)
Name: NF5215_low_6
Description: NF5215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5215_low_6 |
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| [»] scaffold0002 (5 HSPs) |
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| [»] scaffold1869 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 171; Significance: 8e-92; HSPs: 5)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 84 - 302
Target Start/End: Original strand, 403014 - 403237
Alignment:
| Q |
84 |
atgagcttgaagcttcaccttcacatgtttatgagtactcatca---gatttaaacaaatttttattatgatacatcaacctcatgttcatactatggct |
180 |
Q |
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| T |
403014 |
atgagcttgaagcttcaccttcacatgtttatgagtactcatcataagatttaatcaaatttttattaagatacatcaaccacatgttcacactatggct |
403113 |
T |
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| Q |
181 |
gttaggagaattgaaaaaattaaccgtcatat--ttctcaactcaattgagtttaggggttcatttcctacaaatcatatccaaataaaatatgatttat |
278 |
Q |
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| T |
403114 |
gttaggagaattgaaaaaattaaccgtcatatatttctcaactcaattgagttgaggggttcatttccaacaaatcatattcaaataaaatatgatttat |
403213 |
T |
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| Q |
279 |
aaacctatttcgtattgtttgata |
302 |
Q |
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| T |
403214 |
aaacctatttcgtattgtttgata |
403237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 57 - 258
Target Start/End: Original strand, 402647 - 402840
Alignment:
| Q |
57 |
aaatagttaataagggaggactacgaaatgagcttgaagcttcaccttcacatgtttatgagtactcatcaga---tttaaacaaatttttattatgata |
153 |
Q |
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| T |
402647 |
aaatagttaataaggaaggactacaagatgagcttgaagcttcac------acgtttatgaatactcatcataaaatttaatcaaattattattatgata |
402740 |
T |
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| Q |
154 |
catcaacctcatgttcatactatggctgttaggagaattgaaaaaattaaccgtcatatttctcaactcaattgagtttaggggttcatttcctacaaat |
253 |
Q |
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| T |
402741 |
catcaacctcatgttcacactatggttgctaggagatttgaaaaattgaaccctcatatttctcaactcaattg-----agggtctcatttcctacaaat |
402835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 206 - 302
Target Start/End: Original strand, 405933 - 406024
Alignment:
| Q |
206 |
gtcatatttctcaactcaattgagtttaggggttcatttcctacaaatcatatccaaataaaatatgatttataaacctatttcgtattgtttgata |
302 |
Q |
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| T |
405933 |
gtcatatttctcaactcaattgag-----gggctcatttcctacaaatcatattcaaataaaatatgacttgtaaacctatttcgtattgtttgata |
406024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 162 - 302
Target Start/End: Original strand, 405566 - 405701
Alignment:
| Q |
162 |
tcatgttcatactatggctgttaggagaattgaaaaaattaaccgtcatatttctcaactcaattgagtttaggggttcatttcctacaaatcata-tcc |
260 |
Q |
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| T |
405566 |
tcatgttcacactatggttgttaggagagttgaaaaattgattcgtcatatttctcaactcaattg-----aggggctcatttcctacaaatcttattca |
405660 |
T |
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| Q |
261 |
aaataaaatatgatttataaacctatttcgtattgtttgata |
302 |
Q |
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| T |
405661 |
aaatataacatgatttatgaaccta-ttcgtattgtttgata |
405701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 302
Target Start/End: Original strand, 402146 - 402282
Alignment:
| Q |
162 |
tcatgttcatactatggctgttaggagaattgaaaaaattaaccgtcatatttctcaactcaattgagtttaggggttcatttcctacaaatcata-tcc |
260 |
Q |
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| T |
402146 |
tcatgttcagactatggttgttaggagatttgaaaaattgattcgtcatatttctcaactcaattg-----aagggctcatttcctacaaatcttattca |
402240 |
T |
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| Q |
261 |
aaataaaatatgatttataaacctatttcgtattgtttgata |
302 |
Q |
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| T |
402241 |
aaatataacatgttttaagaacctatttcgtattgtttgata |
402282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1869 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1869
Description:
Target: scaffold1869; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 1174 - 1140
Alignment:
| Q |
1 |
catcgaccaatcgtggagaattatgcatccaaatt |
35 |
Q |
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| T |
1174 |
catcgatcaatcgtggagaattatgcatccaaatt |
1140 |
T |
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