View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5215_low_7 (Length: 303)
Name: NF5215_low_7
Description: NF5215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5215_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 301
Target Start/End: Original strand, 7497308 - 7497577
Alignment:
| Q |
16 |
cacaacactatcatatagagttctttacattggaacctaactctgtgtttcttcctgtgcttctacatgcagctatggtcttttatgttcatacaggtat |
115 |
Q |
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| T |
7497308 |
cacaacactatcatattgagttctttacattggaacctaactctgtgtttcttcctgtgcttctacatgcagctatgctcttttatgttcatacaggtat |
7497407 |
T |
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| Q |
116 |
cattggaatttataaaattattttaactaaggaagtttagtataatactttgttatttcttcacttgttaaatatttcagcatatatagtgtagtgagat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
7497408 |
cattggaatttataaaattattttaactaaggaagtttagtataatactttgttattt-ttca--------------gagcatatatagtgtagtgagat |
7497492 |
T |
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| Q |
216 |
attattaaggactagtccttaaaagcctaagatcactattcttaggctagacacctactcatgttcacatgagttcgaattcagga |
301 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7497493 |
attattaaggactagtcctt-aaagcctgagatcactattcttaggctagacacctactcatgttcacatgagttcgaattcagga |
7497577 |
T |
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