View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5216-Insertion-2 (Length: 951)

Name: NF5216-Insertion-2
Description: NF5216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5216-Insertion-2
NF5216-Insertion-2
[»] chr5 (1 HSPs)
chr5 (401-951)||(33638138-33638688)


Alignment Details
Target: chr5 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 401 - 951
Target Start/End: Complemental strand, 33638688 - 33638138
Alignment:
Q  401 ttatgttggtttaagaagggttaggatgaatgttcatttttgtcttgctttctgatgttttcataatagtacaagtgatatgaactattggaaatgtttt 500  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33638688 ttatgatggtttaagaagggttaggatgaatgttcatttttgtcttgctttctgatgttttcataatagtacaagtgatatgaactattggaaatgtttt 33638589  T
Q  501 gagctttcaatgcatcagatgacactattttgttgttctgggtcttgactcttgacattaaatcaaaatgcatacctatgtatactctagttagtgaatt 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33638588 gagctttcaatgcatcagatgacactattttgttgttctgggtcttgactcttgacattaaatcaaaatgcatacctatgtatactctagttagtgaatt 33638489  T
Q  601 tgatatttttcttgcttttgtttattgatttcatgagcagctattcgtgcaagcaaaagaccgtcaacaaactatggatttctcagaaaaacaaataaag 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33638488 tgatatttttcttgcttttgtttattgatttcatgagcagctattcgtgcaagcaaaagaccgtcaacaaactatggatttctcagaaaaacaaataaag 33638389  T
Q  701 gccttagacatgatgatgattgtcaacatcttctttataatatttacggctctatctctctacatcagagaggttgtaagctcggtgatgacttttactc 800  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||    
T  33638388 gccttagacatgatgatgattgtcaacatcttctttataatatttacggctctatctctctacatcagagaggttgtaagcttggtagtgacttttactc 33638289  T
Q  801 tcgaacaaaacccattaaagtggtcactcttttgttttgttttcaccactttcttgtccctcgccatcaagttagccatgatccgtttacaaaacaagat 900  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||| |||||||||||||||| |||||||||||    
T  33638288 tcgaacaaaccccattaaagtggtcactcttttgttttgtattcaccactttcctctccctcgccatcaagctagccatgatccgtttgcaaaacaagat 33638189  T
Q  901 caatcgctacatcatactatttggaatgattctttgtgcttttgtgcttgt 951  Q
    ||| |||||||||||||| || |||||||||||||||||||||||||||||    
T  33638188 caaccgctacatcatactgttgggaatgattctttgtgcttttgtgcttgt 33638138  T

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