View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5216-Insertion-3 (Length: 825)
Name: NF5216-Insertion-3
Description: NF5216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5216-Insertion-3 |
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Alignment Details
Target: chr6 (Bit Score: 536; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 37 - 704
Target Start/End: Complemental strand, 34059182 - 34058520
Alignment:
| Q |
37 |
gatctaatagtgggatgcacaacttccaacttaatatttttactttaagatgatgaaatgaaagctagaaggtgatactagtttagaaggccaaggaagg |
136 |
Q |
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| T |
34059182 |
gatctaatagtgggatgcacaacttccaacttaatatttttactttaagatgatgaaatgaaagctagaaggtgatactagtttagaaggccaaggaagg |
34059083 |
T |
|
| Q |
137 |
tgagtaattcatatttagttgctaagtgaaatatttttggtttgcttgtgagtaacttaagacaatggtgtaggtatttatagtcaaagtggaagagtaa |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
34059082 |
tgagtaattcatatttagttgctaagtgaaatatttttggtttgcttgtgagtaacttaagacaagggtgtaggtatttatagtgaaagtggaagagtaa |
34058983 |
T |
|
| Q |
237 |
aaagttcatctcatggttaaaattagtgcaaagtgtcattcaattaagctagtcatgtattattaagataagaccaaatttattatttaatagattcatt |
336 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
34058982 |
aaagttcatctcatcgttaaaattagtgcaaagtgtcattcaattaagctagtcatatcctattaagataagaccaaatttattatttaatagattcatt |
34058883 |
T |
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| Q |
337 |
gcacacatgcttaattaatatatattttttattctaatttcatgcatctagttactatattatcagttacgaacggatgatactcagtt---cnnnnnnn |
433 |
Q |
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| T |
34058882 |
gcacatatgcttaattaatatatattttttattctaatttcat--------ttactatattatcagttacgaacagatgatactcaattaaaaaaaaaaa |
34058791 |
T |
|
| Q |
434 |
nnnnnnnnntgcataccatcacacaccaccacccaccatgagaacttcaacaaaatgcaaaatgtgaaaaccagtccggtccaacaaaccacgggttcac |
533 |
Q |
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| T |
34058790 |
aaaataaattgcataccatcacacaccaccacccaccatgagagcttcaacaaaatgcaaaatgtgaaaaccagtccggtccaacaaaccacgggttcac |
34058691 |
T |
|
| Q |
534 |
aggttgatctgaaaacccagccggttcaagtgcacaaccggatcttatatgcaatcaacaattcaaaataaaatatatttaattaattaaataattttcg |
633 |
Q |
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| T |
34058690 |
aggttgatctgaaaacccagccggttcaagtgcacaaccggatcttatatgcaatcaacaattcaaaataaaatatatttaattaattaaataattttcg |
34058591 |
T |
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| Q |
634 |
cggccactttagtttgaattttaataatcacttttctatattcaacacacttcaaagttcaaaattaatca |
704 |
Q |
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| T |
34058590 |
cggccactttagtttgaattttaataatcacttttctatattcaacacacttcaaagttcaaaattaatca |
34058520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 755 - 825
Target Start/End: Complemental strand, 34058469 - 34058399
Alignment:
| Q |
755 |
cactgtatgaaaaactttcaaatcaacattgaatcttaaaccctaaaaactatagcactgaaaaatttcat |
825 |
Q |
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| T |
34058469 |
cactgtatgaaaaactttcaaatcaacattgaatcttaaaccctaaaaactatagcactgaaaattttcat |
34058399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 161 - 361
Target Start/End: Original strand, 24235966 - 24236167
Alignment:
| Q |
161 |
agtgaaatatttttggtttgcttgtgagtaacttaagacaatggtgtaggtatttatagtcaaagtggaagagtaaaaagttcatctcatggttaaaatt |
260 |
Q |
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|||| ||| |||||||||| ||| ||||||| || || || |||||| |||||||||| ||| || |||||||| ||||| |||| |||| |||||| |
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| T |
24235966 |
agtggaatgtttttggttttcttctgagtaaattgagcaaagagtgtag-tatttatagtaaaaatgaaagagtaagaagttaatcttatggcgaaaatt |
24236064 |
T |
|
| Q |
261 |
agtgcaaagtgtcattcaattaagctagtcatgtatt--attaagataagaccaaatttattatttaatagattcattgcacacatgcttaattaatata |
358 |
Q |
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| T |
24236065 |
agtgcaatgtggcactcaattaagttagccaggtatttacttaagataagatcaaatttattattggttgagttcattgcacatgtgcttaattaatata |
24236164 |
T |
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| Q |
359 |
tat |
361 |
Q |
| |
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||| |
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| T |
24236165 |
tat |
24236167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 361 - 393
Target Start/End: Original strand, 16838619 - 16838651
Alignment:
| Q |
361 |
ttttttattctaatttcatgcatctagttacta |
393 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
16838619 |
ttttttattctaatttcatgcatctagttacta |
16838651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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