View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5216_high_1 (Length: 638)
Name: NF5216_high_1
Description: NF5216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5216_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 553; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 17 - 626
Target Start/End: Complemental strand, 31629501 - 31628900
Alignment:
| Q |
17 |
aaaattgtcaatccaatatagaagttactttggatgactcctagtcaaagtgaggcttgaaagcaaagacagaaatcaaacatatgtaatttcactaaag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31629501 |
aaaattgtcaatccaatatagaagttactttggatg--------tcaaagtgaggcttgaaagcaaagacagaaatcaaacatatgtaatttcactaaag |
31629410 |
T |
|
| Q |
117 |
taacttcaatttgtaatatcttgaaatgatacaatttttattgaagaatattagtagtgatgatgtggtgtctattttggactcttgacacatgcaggac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31629409 |
taacttcaatttgtaatatcttgaaatgatacaatttttattgaagaaaattagtagtgatgatgtggtgtctattttggactcttgacacatgaaggac |
31629310 |
T |
|
| Q |
217 |
accggacactctttcaacaagaaatgtccgtaacacatgtcattttaattacaattacgtgatttgataattagatcattaacaaataattcttatcata |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31629309 |
accggacactctttcaacaagaaatgtccgtaacacatgtcattttgattccaattacgtaatttgataattagatcattaacaaataattcttatcata |
31629210 |
T |
|
| Q |
317 |
aaaagtaagaaaggaagcaaaactgaccagaaaattatgatataaaaatgctctaggctcccacgatacgatttgaacccaacgcttattgtcattgtct |
416 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31629209 |
aaaagtaagaaaggaaacaaaactgaccagaaaattatgatataaaaatgctctaggctcccacgatacgatttgaacccaacgcttattgtcattgtct |
31629110 |
T |
|
| Q |
417 |
tcacttctgcatagaatatagatgagaaagagatgcaatcaatcataaagagagaatagaataacacaaagaaagttgagttgaactgaaatcaaacctg |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31629109 |
tcacttctgcatagaatatagatgagaaagagatgcaatcaatcataaagagagaatagaataacacaaagaaagttgagttgaactgaaatcaaacctg |
31629010 |
T |
|
| Q |
517 |
agagcattatgagaaatggagttgatatggttgattttcgggatacggagagttaagagaatgagaatgagcaatgtgaaggtcacaaacaatgtgaaga |
616 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31629009 |
agagcattatgagaaatggagttgatatggttgagtttcgggatacggagagttaagagaatgagaatgagcaatgtgaaggtcacaaacaatgtgaaga |
31628910 |
T |
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| Q |
617 |
tcaatgtctg |
626 |
Q |
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|||||||||| |
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| T |
31628909 |
tcaatgtctg |
31628900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 337 - 434
Target Start/End: Complemental strand, 31643658 - 31643561
Alignment:
| Q |
337 |
aactgaccagaaaattatgatataaaaatgctctaggctcccacgatacgatttgaacccaacgcttattgtcattgtcttcacttctgcatagaata |
434 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31643658 |
aactaaccagaaaattatgatataaaaacgctctaggctcccacgatacgatttcaacccaacgcttattgtcatcgtcttcacttctgcatagaata |
31643561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 340 - 428
Target Start/End: Complemental strand, 31650828 - 31650740
Alignment:
| Q |
340 |
tgaccagaaaattatgatataaaaatgctctaggctcccacgatacgatttgaacccaacgcttattgtcattgtcttcacttctgcat |
428 |
Q |
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| T |
31650828 |
tgaccagaaaattatgatataaaaatgctctaggctcccacgatatgatttgaacccaacgcttattgtcatcgtcttcatttctgcat |
31650740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 284 - 411
Target Start/End: Complemental strand, 31654359 - 31654226
Alignment:
| Q |
284 |
taattagatcattaacaaataattcttatca-taaaa---agtaagaaaggaagcaa--aactgaccagaaaattatgatataaaaatgctctaggctcc |
377 |
Q |
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||||||||||||||||||||||| ||||||| ||||| || ||||| |||| ||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31654359 |
taattagatcattaacaaataatccttatcaataaaagcaagcaagaagggaaacaagaaactgacaagaaaattatgatataaaaatgctctaggctcc |
31654260 |
T |
|
| Q |
378 |
cacgatacgatttgaacccaacgcttattgtcat |
411 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
31654259 |
cacgatatgatttgaacccaacgcttattgtcat |
31654226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 337 - 428
Target Start/End: Complemental strand, 31635684 - 31635593
Alignment:
| Q |
337 |
aactgaccagaaaattatgatataaaaatgctctaggctcccacgatacgatttgaacccaacgcttattgtcattgtcttcacttctgcat |
428 |
Q |
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||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||| || | ||||||| |
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| T |
31635684 |
aactgaccaaaaaattatgatataaaaatactctaggctcccacgatacgatttcaacccaacgcttattgtcatcgtcatcgcgtctgcat |
31635593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 556 - 624
Target Start/End: Complemental strand, 31654086 - 31654018
Alignment:
| Q |
556 |
gggatacggagagttaagagaatgagaatgagcaatgtgaaggtcacaaacaatgtgaagatcaatgtc |
624 |
Q |
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| T |
31654086 |
gggatacgaagagttaagataataagaatgaggaatgtgaaagtcacaaacaatgtgaggaacaatgtc |
31654018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 559 - 624
Target Start/End: Complemental strand, 31650600 - 31650535
Alignment:
| Q |
559 |
atacggagagttaagagaatgagaatgagcaatgtgaaggtcacaaacaatgtgaagatcaatgtc |
624 |
Q |
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||||| |||||||||| ||| |||||||| |||||||| |||||||||||||||| || ||||||| |
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| T |
31650600 |
atacgaagagttaagataataagaatgaggaatgtgaaagtcacaaacaatgtgaggaacaatgtc |
31650535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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