View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5216_high_2 (Length: 258)
Name: NF5216_high_2
Description: NF5216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5216_high_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 8642682 - 8642931
Alignment:
| Q |
7 |
aatattgatagaaacataagactgcaaaaggattcatctaannnnnnnnnnggataaatcaagatgtttttcacacgtatttgtgaagactaatttcttg |
106 |
Q |
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| T |
8642682 |
aatattgatagaaacataagactgcaaaaggattcatctaatttttttt--gggtaaatcaagatgtttttcacacatatttctgaagactaatttcttg |
8642779 |
T |
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| Q |
107 |
aaataattgagattcattttaattgaaatattttaaaacacattgttttagacacagtcacgtaattaagaattcgtgttggtatgcggtataggtttgc |
206 |
Q |
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| T |
8642780 |
aagtaattgagattcattttaattgaaatattttaaaacacattgttttagacacagtcacgtaattaacaattcatgttggtatgcggtataggtttgc |
8642879 |
T |
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| Q |
207 |
ggtacgcgacatgagacgaattcttatcatcttagcgatgtgtctaaaacat |
258 |
Q |
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| T |
8642880 |
ggtacgcgacatgagacgaattcttatcatcttagcgatgtgtctaaaacat |
8642931 |
T |
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