View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5216_high_4 (Length: 235)
Name: NF5216_high_4
Description: NF5216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5216_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 62 - 212
Target Start/End: Complemental strand, 33638957 - 33638803
Alignment:
| Q |
62 |
cgccatctccactactcagtac----cacactcactactatcaaaacgtttctaacggaacagagaagaagctcctttcaaaaacccagttgttctccgt |
157 |
Q |
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| T |
33638957 |
cgccatctccactactcagtactactcacactcactactatcaaaacgtttctaacggaacagagaagaagctcctttcaaaaacccagttgttctccgt |
33638858 |
T |
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| Q |
158 |
gtcatttgcctccttaattcctcttatgtatgtcaatttttcttccttatatttt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33638857 |
gtcatttgcctccttaattcctcttatgtatgtcaatttttcttccttatatttt |
33638803 |
T |
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