View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5216_low_3 (Length: 238)
Name: NF5216_low_3
Description: NF5216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5216_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 8642961 - 8643181
Alignment:
| Q |
1 |
tgtcatgccatgcttaacggattattatcattttagttatcctaaaattcacccttatatatctattgttaaacgtataagggtgaatttaaatattatt |
100 |
Q |
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| T |
8642961 |
tgtcatgccatgcttaacggattattatcattttagttatcctaaaattcacccttatatatctattgttaaacgtataagggtgaatttaaatattatt |
8643060 |
T |
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| Q |
101 |
gtccttaaagttatgagatgaatatctttttggatgttattcccttggtagcagcaatagataaaatcagctcaaacaattctaaaataataataatgat |
200 |
Q |
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| T |
8643061 |
gtccttaaagttatgagatgaatatctttttggacgttattcccttggtagcagcaatagataaaatcagctcaaacaattctaaaataataataatgat |
8643160 |
T |
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| Q |
201 |
attttatacaatcaaagttat |
221 |
Q |
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|||||||| |||||||||||| |
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| T |
8643161 |
attttatataatcaaagttat |
8643181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 8651036 - 8651077
Alignment:
| Q |
156 |
aatagataaaatcagctcaaacaattctaaaataataataat |
197 |
Q |
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| T |
8651036 |
aatatataaaatcagctcaaacaattctaaaataataataat |
8651077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 8650541 - 8650586
Alignment:
| Q |
33 |
ttagttatcctaaaa-ttcacccttatatatctattgttaaacgta |
77 |
Q |
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| T |
8650541 |
ttagttatcctaaaaattcacccttatatatctattgctaaacgta |
8650586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 132
Target Start/End: Original strand, 8650643 - 8650675
Alignment:
| Q |
100 |
tgtccttaaagttatgagatgaatatctttttg |
132 |
Q |
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| T |
8650643 |
tgtccttaaagttatgagatgaacatctttttg |
8650675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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