View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5217-Insertion-1 (Length: 510)
Name: NF5217-Insertion-1
Description: NF5217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5217-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 437; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 6 - 454
Target Start/End: Complemental strand, 48895669 - 48895221
Alignment:
| Q |
6 |
cactgtctactttaccttcttcctcattaatgtctgcatcatgttcatggccacgcctatttaatttgatttccagctcttccttatgacttacatccca |
105 |
Q |
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| T |
48895669 |
cactgtctactttaccttcttcatcattaatgtctgcatcatgttcatggccacgcctatctaatttgatttccagctcttccttatgacttacatccca |
48895570 |
T |
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| Q |
106 |
atttcagtgagttgcttgttctaatttcacatctttgctcacaataatccttttagtatttagacttgagaaaaaaggcaaaaggtaaagataaataaac |
205 |
Q |
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| T |
48895569 |
atttcagtgagttgcttgttctaatttcacatctttgctcacaataatccttttagtatttagacttgagaaaaaaggcaaaaggtaaagataaataaac |
48895470 |
T |
|
| Q |
206 |
cttataatgagatacaaggaaaacaacaagttattaaaaatagatatacatgctatataatgttttccattaaccatatgttgattttccaccaggaaca |
305 |
Q |
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| T |
48895469 |
cttataatgagatacaaggaaaacaacaagttattaaaaatagatatacatgctatataatgttttccattaaccatatgttgattttccaccaggaaca |
48895370 |
T |
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| Q |
306 |
gaacacaaattgttctactcttaaattacgcaaatttcaacattgattagggccaaagtaaattgtttcaatttgaaaaatttagagtaatattcaaaca |
405 |
Q |
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| T |
48895369 |
gaatacaaattgttctactcttaaattacgcaaatttcaacattgattagggccaaagtaaattgtttcaatttgaaaaatttagagtaatattcaaaca |
48895270 |
T |
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| Q |
406 |
ttggtggtgtctttgattctctattcagcaatgatatagatcaaaaggc |
454 |
Q |
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| T |
48895269 |
ttggtggtgtctttgattctctattcagcaatgatatagatcaaaaggc |
48895221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 49045694 - 49045843
Alignment:
| Q |
9 |
tgtctactttaccttcttcctcattaatgtctgcat-catgttcatggccacgcctatttaatttgatttccagctcttccttatgacttacatcccaat |
107 |
Q |
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| T |
49045694 |
tgtctagttcaccttcttcctcattgatgtctacattcatgttcatggac---cccatctaatttaatttccagctcttccttgtgactttcatcccaat |
49045790 |
T |
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| Q |
108 |
ttcagtgagttgcttgttctaatttcacatctttgctcacaataatccttttag |
161 |
Q |
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| T |
49045791 |
tccccagagttacttgtcctaatttcacatc-ctgctcacagtaatccttttag |
49045843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 48897050 - 48896909
Alignment:
| Q |
74 |
atttccagctcttccttatgacttacatcccaatttcagtgagttgcttgttctaatttcacatctttgctcacaataatccttttagtatttagacttg |
173 |
Q |
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| T |
48897050 |
atttcctgctcttctttacgactttcatcacgattcaactgacttgcttgagctaatttcacatccctagtcactataatccttttagtatttagacttg |
48896951 |
T |
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| Q |
174 |
agaaaaaaggcaaaaggtaaagataaataaaccttataatgag |
216 |
Q |
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| T |
48896950 |
aga-aaaagacaaaaggtaaagataaatattccttgtaatgag |
48896909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 74 - 137
Target Start/End: Original strand, 45374354 - 45374417
Alignment:
| Q |
74 |
atttccagctcttccttatgacttacatcccaatttcagtgagttgcttgttctaatttcacat |
137 |
Q |
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| T |
45374354 |
atttccagctcttccttacgattttcatcccaatttcaccgagttacttgttcaaatttcacat |
45374417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 435
Target Start/End: Complemental strand, 48896841 - 48896755
Alignment:
| Q |
346 |
cattgattagggccaaagtaaattgtttcaatttgaaaaatttagagtaatattcaaacattggtggtgtctttgattctctattcagca |
435 |
Q |
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| T |
48896841 |
cattgattggggtcaaagtgaatagtttcaatttgaaaactgtagagtaataatcaaacat---tgatgtctttgattctttgttcagca |
48896755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 435
Target Start/End: Original strand, 17163448 - 17163579
Alignment:
| Q |
305 |
agaacacaaattgttctactcttaaattacgcaaatttcaacattgattagggccaaagtaaattgtttcaatttgaaaaat-ttag---agtaatattc |
400 |
Q |
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| T |
17163448 |
agaaaacaaattgttcaacttttcaattagacaaatttcaacattgattcgggtcaaagtgagtaatttcaatttgaaaactgttagagaagtaataatc |
17163547 |
T |
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| Q |
401 |
aaacattggtggtgtctttgattctctattcagca |
435 |
Q |
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| T |
17163548 |
aaaca---atggtgtctttgattctctactcagca |
17163579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 364
Target Start/End: Original strand, 17128207 - 17128266
Alignment:
| Q |
305 |
agaacacaaattgttctactcttaaattacgcaaatttcaacattgattagggccaaagt |
364 |
Q |
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| T |
17128207 |
agaaaacaaattgttcaacttttcaattagacaaatttcaacattgattagggtcaaagt |
17128266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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