View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5217-Insertion-2 (Length: 466)
Name: NF5217-Insertion-2
Description: NF5217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5217-Insertion-2 |
 | |
|
| [»] chr3 (25 HSPs) |
| |
|
| [»] scaffold1439 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 427; Significance: 0; HSPs: 25)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 8 - 466
Target Start/End: Original strand, 22430796 - 22431254
Alignment:
| Q |
8 |
cacaaacccttcagcaatccattgactagttaatgtctttgaataaactatatagtcttcaggatataatccaaaatacaagaaacatgacttgaggttg |
107 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22430796 |
cacaaacccttcagcaatccattgacaagttaatgtctttgaataaactatatagtctttaggatataatccaaaatacaagaaacatgacttgaggttg |
22430895 |
T |
|
| Q |
108 |
caaggcaaatcatggtaactaagtcctaaagtttttcttatcacagaattttcatttgcctgatctgcatttatattttcactaaacttagaccattcaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22430896 |
caaggcaaatcatggtaactaagtcctaaagtttttcttatcacaggattttcatttgcctgatctgcatttatattttcactaaacttagaccattcaa |
22430995 |
T |
|
| Q |
208 |
ttggattcctatctttgcaagctaaaataccaccaatgactacaattgcgagtggtaatccattgcatttatcaacaattttggaagatatatctataag |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
22430996 |
ttggattcctatctttgcaagctaaaataccaccaatgactacaattgcgagtggtaatccattgcatttttcaacaattttggaagatatatctataag |
22431095 |
T |
|
| Q |
308 |
attttctggacaatatccgctcaagtcatggaacacttttttattgaacaattctaaagatttttcttcggttaaacctttaagttcatgcacttcaaca |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22431096 |
attttctggacaatatccgctcaagtcatggaacactttcttattgaacaattctaaagatttttcttcggttaaacctttaagttcatgcacttcaaca |
22431195 |
T |
|
| Q |
408 |
aaagaagatttcttacaagcatctgcaacacccttgtttcttgttgtgattaatatctt |
466 |
Q |
| |
|
|||||||||||||||||||||||| || || |||||||||||||||||||||||||||| |
|
|
| T |
22431196 |
aaagaagatttcttacaagcatctacaccatccttgtttcttgttgtgattaatatctt |
22431254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 8 - 466
Target Start/End: Original strand, 22367550 - 22368008
Alignment:
| Q |
8 |
cacaaacccttcagcaatccattgactagttaatgtctttgaataaactatatagtcttcaggatataatccaaaatacaagaaacatgacttgaggttg |
107 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||| | |||||| ||| | |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
22367550 |
cacaaacccttcagcaatccattgacgagtcaatatatttgaacgaacatttgagtcttcaggatataatccaaagtacaagaaacatgacttgaggttg |
22367649 |
T |
|
| Q |
108 |
caaggcaaatcatggtaactaagtcctaaagtttttcttatcacagaattttcatttgcctgatctgcatttatattttcactaaacttagaccattcaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||| |||||| |||| ||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22367650 |
caaggcaaatcatggtaactaagtcctagaattttttttatcatggaatattcctttgactgatctgcatttatattttcactaaacttagaccattcaa |
22367749 |
T |
|
| Q |
208 |
ttggattcctatctttgcaagctaaaataccaccaatgactacaattgcgagtggtaatccattgcatttatcaacaattttggaagatatatctataag |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
22367750 |
ttggattcctatctttgcaagctaaaataccaccaatgactacaattgcgagtggtaatccattgcatttttcaacaattttggaagatatatcaataag |
22367849 |
T |
|
| Q |
308 |
attttctggacaatatccgctcaagtcatggaacacttttttattgaacaattctaaagatttttcttcggttaaacctttaagttcatgcacttcaaca |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||| |
|
|
| T |
22367850 |
attttctggacaatatccgctcaagtcatggaacgccttcttattgaacaattctaaagatttttcttcacttaaaccttcaagtttatgcacttcaaca |
22367949 |
T |
|
| Q |
408 |
aaagaagatttcttacaagcatctgcaacacccttgtttcttgttgtgattaatatctt |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
22367950 |
aaagaagatttcttacaagcatctgcaacatcctcgtttcttgttgtgattaatatctt |
22368008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 12 - 462
Target Start/End: Original strand, 22436261 - 22436711
Alignment:
| Q |
12 |
aacccttcagcaatccattgactagttaatgtctttgaataaactatatagtcttcaggatataatccaaaatacaagaaacatgacttgaggttgcaag |
111 |
Q |
| |
|
|||||||||||||||||||| | ||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||| |
|
|
| T |
22436261 |
aacccttcagcaatccattggcgagtcaatgtttttgaacgaactatatagtcttcaggatataatccaaaatacaagaaacacgacttgaggtagtaag |
22436360 |
T |
|
| Q |
112 |
gcaaatcatggtaactaagtcctaaagtttttcttatcacagaattttcatttgcctgatctgcatttatattttcactaaacttagaccattcaattgg |
211 |
Q |
| |
|
|||||||||||||||||| ||||| | |||||||||| | |||| |||||||| |||||||||||||||||||||||||||||| |||||||| | || |
|
|
| T |
22436361 |
gcaaatcatggtaactaaatcctagaatttttcttattatggaatattcatttgactgatctgcatttatattttcactaaacttgtaccattcagtagg |
22436460 |
T |
|
| Q |
212 |
attcctatctttgcaagctaaaataccaccaatgactacaattgcgagtggtaatccattgcatttatcaacaattttggaagatatatctataagattt |
311 |
Q |
| |
|
||| ||||||||||||| ||||| ||||||| ||||||||||||| || |||||||| |||||||| | ||||||||||||||||||||| ||||||||| |
|
|
| T |
22436461 |
atttctatctttgcaagataaaagaccaccagtgactacaattgctagaggtaatcctttgcattttttaacaattttggaagatatatcaataagattt |
22436560 |
T |
|
| Q |
312 |
tctggacaatatccgctcaagtcatggaacacttttttattgaacaattctaaagatttttcttcggttaaacctttaagttcatgcacttcaacaaaag |
411 |
Q |
| |
|
| ||||||| |||| ||||||| |||||| | || ||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||| |
|
|
| T |
22436561 |
tgtggacaacatccactcaagttatggaatgccttcttattgaacaattctaaagatttttcttcagttaaaccttgaagttcatgtacttcaacaaaag |
22436660 |
T |
|
| Q |
412 |
aagatttcttacaagcatctgcaacacccttgtttcttgttgtgattaata |
462 |
Q |
| |
|
||||| ||||| ||| || ||||||| | | || |||||||||||||||| |
|
|
| T |
22436661 |
aagatctcttaaaagaatttgcaacattcattttccttgttgtgattaata |
22436711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 464
Target Start/End: Original strand, 22357628 - 22358081
Alignment:
| Q |
8 |
cacaaacccttcagcaatccattgactagttaatgtctttgaataaactatatagtcttcaggatataatccaaaatacaagaaacatgacttgaggttg |
107 |
Q |
| |
|
|||||||||||||||||||||||| | ||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
22357628 |
cacaaacccttcagcaatccattgtcgagtcaatgtctttgaatgaactttatagtcttcaggatataatccaaaatacaagaaacatgacttgaggtag |
22357727 |
T |
|
| Q |
108 |
caaggcaaatcatggtaactaagtcctaaagtttttcttatcacagaattttcatttgcctgatctgcatttatattttcactaaacttagaccattcaa |
207 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||| | |||| ||| | | || |||||||||||||||||||||||||| ||||||| | |
|
|
| T |
22357728 |
taaggcaaatcatggtaactaaatcctaaaatttttcttattatggaatattcctctaact---ctgcatttatattttcactaaacttataccattcca |
22357824 |
T |
|
| Q |
208 |
ttggattcctatctttgcaagctaaaataccaccaatgactacaattgcgagtggtaatccattgcatttatcaacaattttggaagatatatctataag |
307 |
Q |
| |
|
||||| | |||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||| | ||||||||||||||||||||| ||||| |
|
|
| T |
22357825 |
ttggaattttatctttgggagctaaaataccaccaatgactacaattgctagtggtaatcctttgcattttttaacaattttggaagatatatcaataag |
22357924 |
T |
|
| Q |
308 |
attttctggacaatatccgctcaagtcatggaacacttttttattgaacaattctaaagatttttcttcggttaaacctttaagttcatgcacttcaaca |
407 |
Q |
| |
|
||||||||||||| ||| | ||||||||||| | || ||||||||||| || ||||||| |||| | || |||||||| ||||||| |||||||||| |
|
|
| T |
22357925 |
attttctggacaacgtccatttaagtcatggaatgccttcttattgaacaactcaaaagattgttctacagtcaaaccttttagttcatacacttcaaca |
22358024 |
T |
|
| Q |
408 |
aaagaagatttcttacaagcatctgcaacacccttgtttcttgttgtgattaatatc |
464 |
Q |
| |
|
||||||||||||||||||| || |||||| || |||||||||| |||||||||||| |
|
|
| T |
22358025 |
aaagaagatttcttacaagtattcgcaacatccatgtttcttgtagtgattaatatc |
22358081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 8 - 464
Target Start/End: Original strand, 22442368 - 22442818
Alignment:
| Q |
8 |
cacaaacccttcagcaatccattgactagttaatgtctttgaataaactatatagtcttcaggatataatccaaaatacaagaaacatgacttgaggttg |
107 |
Q |
| |
|
||||||||||||||| |||||||||| ||| |||||||||||| || || ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22442368 |
cacaaacccttcagctatccattgacgagtcaatgtctttgaacaagcttcatagtcttcgggatataatccaaaatacaagaaacatgacttgaggttg |
22442467 |
T |
|
| Q |
108 |
caaggcaaatcatggtaactaagtcctaaagtttttcttatcacagaattttcatttgcctgatctgcatttatattttcactaaacttagaccattcaa |
207 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||| | |||| ||| || |||||||||||||||||||||| |||||| | ||||||||| |
|
|
| T |
22442468 |
caaggcaaatcatggtaactgagtcctaaaatttttcttactatggaatattccttaaactgatctgcatttatattttcattaaactcataccattcaa |
22442567 |
T |
|
| Q |
208 |
ttggattcctatctttgcaagctaaaataccaccaatgactacaattgcgagtggtaatccattgcatttatcaacaattttggaagatatatctataag |
307 |
Q |
| |
|
||| ||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| | ||||| |
|
|
| T |
22442568 |
ttgtatttctatctttgggagctaaaataccaccaatgactacaattgctagtggtaatccattgcatttttcaacaattttggaagatataccaataag |
22442667 |
T |
|
| Q |
308 |
attttctggacaatatccgctcaagtcatggaacacttttttattgaacaattctaaagatttttcttcggttaaacctttaagttcatgcacttcaaca |
407 |
Q |
| |
|
||||| ||||||| |||| | |||||||| || | || ||||||||||| || ||||||| |||| | || |||||||| |||| | | |||| |
|
|
| T |
22442668 |
attttttggacaacgtccgtttaagtcatgaaatgccttcttattgaacaactccaaagattgttctacagtcaaaccttttagtt------cgtaaaca |
22442761 |
T |
|
| Q |
408 |
aaagaagatttcttacaagcatctgcaacacccttgtttcttgttgtgattaatatc |
464 |
Q |
| |
|
||||||||||||||||||| || ||||||| || |||||||||| |||||||||||| |
|
|
| T |
22442762 |
aaagaagatttcttacaagtatttgcaacatccatgtttcttgtagtgattaatatc |
22442818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 466
Target Start/End: Original strand, 22630067 - 22630519
Alignment:
| Q |
8 |
cacaaacccttcagcaatccattgactagttaatgtctttgaataaactatatagtcttcaggatataatccaaaatacaagaaacatgacttgaggttg |
107 |
Q |
| |
|
||||||||||||||| |||||||| | ||| || ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
22630067 |
cacaaacccttcagcgatccattggcgagtcaacacctttgaacgaactatatagtcttcaggatagaatccaaaatacaagaaacatgacttgaggttg |
22630166 |
T |
|
| Q |
108 |
caaggcaaatcatggtaactaagtcctaaagtttttcttatcacagaattttcatttgcctgatctgcatttatattttcactaaacttagaccattcaa |
207 |
Q |
| |
|
|||| |||||||||||||||| ||||||| |||||||||| |||| ||| | | || || ||||||||||||||||||||||||||||||||| |
|
|
| T |
22630167 |
taaggtaaatcatggtaactaaatcctaaattttttcttattgtggaatattcctctaact---ctacatttatattttcactaaacttagaccattcaa |
22630263 |
T |
|
| Q |
208 |
ttggattcctatctttgcaagctaaaataccaccaatgactacaattgcgagtggtaatccattgcatttatcaacaattttggaagatatatctataag |
307 |
Q |
| |
|
||||||| ||| |||||| || ||||||| |||| ||||||||||||| || |||||||| |||||||| |||||||||||||||||||| || | ||| |
|
|
| T |
22630264 |
ttggatttctaactttgcgagataaaatatcaccggtgactacaattgctagaggtaatcctttgcatttttcaacaattttggaagatatgtcaaaaag |
22630363 |
T |
|
| Q |
308 |
attttctggacaatatccgctcaagtcatggaacacttttttattgaacaattctaaagatttttcttcggttaaacctttaagttcatgcacttcaaca |
407 |
Q |
| |
|
||||||||||||| |||| ||||||||||||| |||| || || |||||||| ||||| | |||||| | ||||| || || |||||||||| || |
|
|
| T |
22630364 |
attttctggacaaaatccatccaagtcatggaacgctttctttttaaacaattccaaagactgttcttcagataaacgttccagctcatgcactttgcca |
22630463 |
T |
|
| Q |
408 |
aaagaagatttcttacaagcatctgcaacacccttgtttcttgttgtgattaatatctt |
466 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
22630464 |
a---aagatttcttacaagcatctgcaacatccttgtttcttgttgtgattaatatctt |
22630519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 466
Target Start/End: Original strand, 22467577 - 22468029
Alignment:
| Q |
8 |
cacaaacccttcagcaatccattgactagttaatgtctttgaataaactatatagtcttcaggatataatccaaaatacaagaaacatgacttgaggttg |
107 |
Q |
| |
|
|||||||||||||||||||||||| | ||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22467577 |
cacaaacccttcagcaatccattggcgagtcaacgtctttgaatgaactatatagtcttcaggatataatccaaaatacaagaaacatgacttgaggttg |
22467676 |
T |
|
| Q |
108 |
caaggcaaatcatggtaactaagtcctaaagtttttcttatcacagaattttcatttgcctgatctgcatttatattttcactaaacttagaccattcaa |
207 |
Q |
| |
|
|||| |||| ||||||||||| ||||||| |||||||||| |||| | | | | || || ||||||||||||||||||| ||||||||||||| |
|
|
| T |
22467677 |
taaggtaaattatggtaactaaatcctaaaatttttcttattgtggaatatccctctaact---ctacatttatattttcactaaatttagaccattcaa |
22467773 |
T |
|
| Q |
208 |
ttggattcctatctttgcaagctaaaataccaccaatgactacaattgcgagtggtaatccattgcatttatcaacaattttggaagatatatctataag |
307 |
Q |
| |
|
||||||| |||| ||||| || ||||||| |||| |||| |||||||| || |||||||| ||||| || |||||||||||||||||||| || | ||| |
|
|
| T |
22467774 |
ttggatttctatttttgcgagataaaatatcaccggtgacaacaattgctagaggtaatcctttgcagttttcaacaattttggaagatatgtcaaaaag |
22467873 |
T |
|
| Q |
308 |
attttctggacaatatccgctcaagtcatggaacacttttttattgaacaattctaaagatttttcttcggttaaacctttaagttcatgcacttcaaca |
407 |
Q |
| |
|
||||||||||||| |||| ||||||||||||| | || || || |||||||| || || | |||||| | ||||| || || |||||||||| | || |
|
|
| T |
22467874 |
attttctggacaaactccgtccaagtcatggaacgccttctttttaaacaattccaaggactgttcttcagataaacgttccagctcatgcactttacca |
22467973 |
T |
|
| Q |
408 |
aaagaagatttcttacaagcatctgcaacacccttgtttcttgttgtgattaatatctt |
466 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
22467974 |
a---aagatttcttacaagcatctgcaacaaccttgtttctcgttgtgattaatatctt |
22468029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 8 - 466
Target Start/End: Original strand, 22353438 - 22353891
Alignment:
| Q |
8 |
cacaaacccttcagcaatccattgactagttaatgtctttgaataaactatatagtcttcaggatataatccaaaatacaagaaacatgacttgaggttg |
107 |
Q |
| |
|
||||||||| |||||||||||||||| ||| ||||| | |||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
22353438 |
cacaaacccctcagcaatccattgacgagtcaatgtatctgaataaacttcgtagtcttcgagatataatccaaaatacaagaaacatgacttgaggtag |
22353537 |
T |
|
| Q |
108 |
caa-ggcaaatcatggtaactaagtcctaaagtttttcttatcacagaattttcatttgcctgatctgcatttatattttcactaaacttagaccattca |
206 |
Q |
| |
|
|| ||||||||||||||||||| ||||||| |||||||||| | |||| ||| | | || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
22353538 |
taaaggcaaatcatggtaactaaatcctaaaatttttcttattatggaatattcctctaact---ctgcatttatattttcactaaacttagaccattca |
22353634 |
T |
|
| Q |
207 |
attggattcctatctttgcaagctaaaataccaccaatgactacaattgcgagtggtaatccattgcatttatcaacaattttggaagatatatctataa |
306 |
Q |
| |
|
|||||||| |||||||||| || ||||||| ||| ||||||||||||||||| |||||||| |||||||| |||| ||||| ||||||||||| | || |
|
|
| T |
22353635 |
attggatttctatctttgcgagataaaatattacctatgactacaattgcgagaggtaatcctttgcatttttcaataatttcggaagatatataaaaaa |
22353734 |
T |
|
| Q |
307 |
gattttctggacaatatccgctcaagtcatggaacacttttttattgaacaattctaaagatttttcttcggttaaacctttaagttcatgcacttcaac |
406 |
Q |
| |
|
|||||| ||||||| ||||| ||||||| ||||| | || || || ||||| || ||||||| || ||| | ||||| || || |||||||||| | | |
|
|
| T |
22353735 |
gattttttggacaaaatccgtccaagtcacggaacgccttctttttaaacaaatccaaagattgtttttcagataaacgttccagctcatgcactttacc |
22353834 |
T |
|
| Q |
407 |
aaaagaagatttcttacaagcatctgcaacacccttgtttcttgttgtgattaatatctt |
466 |
Q |
| |
|
| |||||||||||||| |||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
22353835 |
ga---aagatttcttacaatcatctgtaacatccttgtttcttgttgtgattaatatctt |
22353891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 12 - 464
Target Start/End: Original strand, 22635136 - 22635582
Alignment:
| Q |
12 |
aacccttcagcaatccattgactagttaatgtctttgaataaactatatagtcttcaggatataatccaaaatacaagaaacatgacttgaggttgcaag |
111 |
Q |
| |
|
|||||||||||||||||||| | ||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
22635136 |
aacccttcagcaatccattggcgagtcaatgtttttgaacgaactatatagtcttcaggatataatccaaaatacaagaaacatgacttgaggtagcatg |
22635235 |
T |
|
| Q |
112 |
gcaaatcatggtaactaagtcctaaagtttttcttatcacagaattttcatttgcctgatctgcatttatattttcactaaacttagaccattcaattgg |
211 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |||| ||| | | | |||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
22635236 |
gcaaatcatggtaactaagtcctaaaatttttcttatcatggaatattcctctaac---tctgcatttatattttcactaaacttcgaccattctattga |
22635332 |
T |
|
| Q |
212 |
attcctatctttgcaagctaaaataccaccaatgactacaattgcgagtggtaatccattgcatttatcaacaattttggaagatatatctataagattt |
311 |
Q |
| |
|
||| ||||| ||| || || |||| ||||||||||||||||||| || |||||||| |||||||| || |||||||||||||||||||| ||||||| | |
|
|
| T |
22635333 |
atttctatccgtgcgagatagaatatcaccaatgactacaattgctagaggtaatcctttgcatttttcgacaattttggaagatatatcaataagatat |
22635432 |
T |
|
| Q |
312 |
tctggacaatatccgctcaagtcatggaacacttttttattgaacaattctaaagatttttcttcggttaaacctttaagttcatgcacttcaacaaaag |
411 |
Q |
| |
|
|| ||| || ||| |||| |||||| | | || || |||||||| ||||||| || ||| | ||||| || || | |||||||| | ||| |
|
|
| T |
22635433 |
tcaggaaaaatgccgtccaagccatggagcgccttctttagaaacaattccaaagattgtttttcagataaacgttccagattatgcactttaccaa--- |
22635529 |
T |
|
| Q |
412 |
aagatttcttacaagcatctgcaacacccttgtttcttgttgtgattaatatc |
464 |
Q |
| |
|
||||||| |||||||||| ||||||| |||| ||||||||||||||||||||| |
|
|
| T |
22635530 |
aagatttattacaagcatttgcaacatccttttttcttgttgtgattaatatc |
22635582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 64 - 466
Target Start/End: Original strand, 22458171 - 22458570
Alignment:
| Q |
64 |
cttcaggatataatccaaaatacaagaaacatgacttgaggttgcaaggcaaatcatggtaactaagtcctaaagtttttcttatcacagaattttcatt |
163 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||| ||| || ||||||||||| || |||| | ||||| ||||| ||| ||| || |
|
|
| T |
22458171 |
cttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacagatcatggtaaccgagacctacaattttttttatcttcaaatcttcttt |
22458270 |
T |
|
| Q |
164 |
tgcctgatctgcatttatattttcactaaacttagaccattcaattggattcctatctttgcaagctaaaataccaccaatgactacaattgcgagtggt |
263 |
Q |
| |
|
| || || ||||| |||||||||||||||| ||||||| || ||| ||||||||||||| ||||||||||||||||| ||||||||| ||||| |
|
|
| T |
22458271 |
taact---ctatatttagattttcactaaacttataccattctgatgtatttctatctttgcaagataaaataccaccaatgagtacaattgctagtggc |
22458367 |
T |
|
| Q |
264 |
aatccattgcatttatcaacaattttggaagatatatctataagattttctggacaatatccgctcaagtcatggaacacttttttattgaacaattcta |
363 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||| |||||||||||||||||| |||| | ||||| ||||| || ||||||||||| || | |
|
|
| T |
22458368 |
aatccattgcatttttcaacaattttaaaagatatatcaataagattttctggacaacgtccgtttaagtcgtggaatgtcttcttattgaacaactcca |
22458467 |
T |
|
| Q |
364 |
aagatttttcttcggttaaacctttaagttcatgcacttcaacaaaagaagatttcttacaagcatctgcaacacccttgtttcttgttgtgattaatat |
463 |
Q |
| |
|
|||||| || ||| | |||||||| | ||||| ||||||||||||||||||||||||||| |||| ||||||| || |||||||||||||||||||||| |
|
|
| T |
22458468 |
aagattgttgttcagccaaacctttcatttcatacacttcaacaaaagaagatttcttacatgcatttgcaacatccatgtttcttgttgtgattaatat |
22458567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 64 - 466
Target Start/End: Original strand, 22481152 - 22481551
Alignment:
| Q |
64 |
cttcaggatataatccaaaatacaagaaacatgacttgaggttgcaaggcaaatcatggtaactaagtcctaaagtttttcttatcacagaattttcatt |
163 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||| ||| || ||||||||||| || |||| | ||||| ||||| ||| ||| || |
|
|
| T |
22481152 |
cttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacagatcatggtaaccgagacctacaattttttttatcttcaaatcttcttt |
22481251 |
T |
|
| Q |
164 |
tgcctgatctgcatttatattttcactaaacttagaccattcaattggattcctatctttgcaagctaaaataccaccaatgactacaattgcgagtggt |
263 |
Q |
| |
|
| || || ||||| |||||||||||||||| ||||||| || ||| ||||||||||||| ||||||||||||||||| ||||||||| ||||| |
|
|
| T |
22481252 |
taact---ctatatttagattttcactaaacttataccattctgatgtatttctatctttgcaagataaaataccaccaatgagtacaattgctagtggc |
22481348 |
T |
|
| Q |
264 |
aatccattgcatttatcaacaattttggaagatatatctataagattttctggacaatatccgctcaagtcatggaacacttttttattgaacaattcta |
363 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||| |||||||||||||||||| |||| | ||||| ||||| || ||||||||||| || | |
|
|
| T |
22481349 |
aatccattgcatttttcaacaattttaaaagatatatcaataagattttctggacaacgtccgtttaagtcgtggaatgtcttcttattgaacaactcca |
22481448 |
T |
|
| Q |
364 |
aagatttttcttcggttaaacctttaagttcatgcacttcaacaaaagaagatttcttacaagcatctgcaacacccttgtttcttgttgtgattaatat |
463 |
Q |
| |
|
|||||| || ||| | |||||||| | ||||| ||||||||||||||||||||||||||| |||| ||||||| || |||||||||||||||||||||| |
|
|
| T |
22481449 |
aagattgttgttcagccaaacctttcatttcatacacttcaacaaaagaagatttcttacatgcatttgcaacatccatgtttcttgttgtgattaatat |
22481548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 22620511 - 22620599
Alignment:
| Q |
9 |
acaaacccttcagcaatccattgactagttaatgtctttgaataaactatatagtcttcaggatataatccaaaatacaagaaacatga |
97 |
Q |
| |
|
|||||||||||||| |||||||| | | | ||| ||||||||| |||| |||| ||||| |||||||||||||||||||| |||||||| |
|
|
| T |
22620511 |
acaaacccttcagctatccattgccgaatcaatctctttgaatcaactttataatcttctggatataatccaaaatacaataaacatga |
22620599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 120
Target Start/End: Complemental strand, 21931272 - 21931161
Alignment:
| Q |
9 |
acaaacccttcagcaatccattgactagttaatgtctttgaataaactatatagtcttcaggatataatccaaaatacaagaaacatgacttgaggttgc |
108 |
Q |
| |
|
|||||||||||||| |||||||| | ||| | | ||||||| | |||| ||| ||||| ||||||| ||||||||||||||| |||| |||||| | | |
|
|
| T |
21931272 |
acaaacccttcagctatccattgtcgagtcactctctttgatttaacttcataatcttctggatatactccaaaatacaagaagcatggcttgagatagt |
21931173 |
T |
|
| Q |
109 |
aaggcaaatcat |
120 |
Q |
| |
|
|||||||||||| |
|
|
| T |
21931172 |
aaggcaaatcat |
21931161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 22115937 - 22115825
Alignment:
| Q |
8 |
cacaaacccttcagcaatccattgactagttaatgtctttgaataaactatatagtcttcaggatataatccaaaatacaagaaacatgacttgaggttg |
107 |
Q |
| |
|
||||||||||||||| |||||||| | ||| | | ||||||| | |||| | | ||||| || |||| |||||||||||| |||||||||||||| | | |
|
|
| T |
22115937 |
cacaaacccttcagctatccattgtcgagtgattctctttgatttaacttcaaaatcttctgggtatactccaaaatacaacaaacatgacttgagatag |
22115838 |
T |
|
| Q |
108 |
caaggcaaatcat |
120 |
Q |
| |
|
|||||||||||| |
|
|
| T |
22115837 |
taaggcaaatcat |
22115825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 22180269 - 22180157
Alignment:
| Q |
8 |
cacaaacccttcagcaatccattgactagttaatgtctttgaataaactatatagtcttcaggatataatccaaaatacaagaaacatgacttgaggttg |
107 |
Q |
| |
|
||||||||||||||| ||||||| | ||||| | |||| || | |||| ||| || || ||||||| |||||||||||| |||||||||||||| | | |
|
|
| T |
22180269 |
cacaaacccttcagctatccattttcgagttactctcttcgatttaacttcataatcctctggatatactccaaaatacaacaaacatgacttgagatag |
22180170 |
T |
|
| Q |
108 |
caaggcaaatcat |
120 |
Q |
| |
|
|||||||||||| |
|
|
| T |
22180169 |
taaggcaaatcat |
22180157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 21946476 - 21946364
Alignment:
| Q |
8 |
cacaaacccttcagcaatccattgactagttaatgtctttgaataaactatatagtcttcaggatataatccaaaatacaagaaacatgacttgaggttg |
107 |
Q |
| |
|
||||||||||||||| |||||||| | | | | | |||| || | |||| ||| ||||| ||||||| ||||||||| || || ||||||||||| | | |
|
|
| T |
21946476 |
cacaaacccttcagctatccattgtcgaatcactctcttcgatttaacttcataatcttctggatatactccaaaataaaacaagcatgacttgagatag |
21946377 |
T |
|
| Q |
108 |
caaggcaaatcat |
120 |
Q |
| |
|
||||||||||||| |
|
|
| T |
21946376 |
caaggcaaatcat |
21946364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 22105560 - 22105448
Alignment:
| Q |
8 |
cacaaacccttcagcaatccattgactagttaatgtctttgaataaactatatagtcttcaggatataatccaaaatacaagaaacatgacttgaggttg |
107 |
Q |
| |
|
||||||||||||||| |||||||| | ||| | | |||| || | |||| ||| ||||| ||||||| |||||| ||||| || ||||||||||| | | |
|
|
| T |
22105560 |
cacaaacccttcagctatccattgtcgagtcactctcttcgatttaacttcataatcttctggatatactccaaagtacaacaagcatgacttgagatag |
22105461 |
T |
|
| Q |
108 |
caaggcaaatcat |
120 |
Q |
| |
|
|||||||||||| |
|
|
| T |
22105460 |
taaggcaaatcat |
22105448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 425
Target Start/End: Original strand, 22620756 - 22620954
Alignment:
| Q |
230 |
taaaataccaccaatgactacaattgcgagtggtaatccattgcatttatcaacaattttggaagatatatctataagattttctggacaatatccgctc |
329 |
Q |
| |
|
||||| |||||||| | |||||||||| |||||||| || |||||||| | |||||| |||||||||||| || |||| || ||||||| ||| |
|
|
| T |
22620756 |
taaaagaccaccaacggctacaattgctagtggtaaacccttgcattttctagcaatttcggaagatatatcaattagatcttttggacaacttccatca |
22620855 |
T |
|
| Q |
330 |
aagtca---tggaacacttttttattgaacaattctaaagatttttcttcggttaaacctttaagttcatgcacttcaacaaaagaagatttcttacaa |
425 |
Q |
| |
|
|||||| | || || || ||||||||||| || ||||||| ||| || |||||| || ||||||||||| |||| |||||||||||| |||||| |
|
|
| T |
22620856 |
aagtcaaatcgaaataccttcttattgaacaactcaaaagattgttcctcagttaaaggttgtagttcatgcacctcaataaaagaagattttttacaa |
22620954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 466
Target Start/End: Original strand, 22657071 - 22657147
Alignment:
| Q |
390 |
agttcatgcacttcaacaaaagaagatttcttacaagcatctgcaacacccttgtttcttgttgtgattaatatctt |
466 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| | |||||| || | ||||||||||| || |||||||| |
|
|
| T |
22657071 |
agttcatgcacttcaataaaagaagatttcttacaatacaccgcaacatccatatttcttgttgtaataaatatctt |
22657147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 120
Target Start/End: Complemental strand, 22028851 - 22028740
Alignment:
| Q |
9 |
acaaacccttcagcaatccattgactagttaatgtctttgaataaactatatagtcttcaggatataatccaaaatacaagaaacatgacttgaggttgc |
108 |
Q |
| |
|
|||||||||||||| |||||||| | | | | | ||||||| | |||| ||| ||||| ||||||| |||||||||||| || |||| |||||| | | |
|
|
| T |
22028851 |
acaaacccttcagctatccattgtcgaatcactctctttgatttaacttcataatcttctggatatactccaaaatacaacaagcatggcttgagatagt |
22028752 |
T |
|
| Q |
109 |
aaggcaaatcat |
120 |
Q |
| |
|
|||||||||||| |
|
|
| T |
22028751 |
aaggcaaatcat |
22028740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 120
Target Start/End: Complemental strand, 22187839 - 22187728
Alignment:
| Q |
9 |
acaaacccttcagcaatccattgactagttaatgtctttgaataaactatatagtcttcaggatataatccaaaatacaagaaacatgacttgaggttgc |
108 |
Q |
| |
|
|||||||||||||| |||||||| | | | | | ||||||| | |||| ||| ||||| ||||||| |||||||||||| || |||| |||||| | | |
|
|
| T |
22187839 |
acaaacccttcagctatccattgtcgaatcactctctttgatttaacttcataatcttctggatatactccaaaatacaacaagcatggcttgagatagt |
22187740 |
T |
|
| Q |
109 |
aaggcaaatcat |
120 |
Q |
| |
|
|||||||||||| |
|
|
| T |
22187739 |
aaggcaaatcat |
22187728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 30988923 - 30989038
Alignment:
| Q |
12 |
aacccttcagcaatccattgactagttaatgtctttgaataaactatatagtcttcaggatataatccaaaatacaagaaacatgacttgaggttgcaag |
111 |
Q |
| |
|
||||||||||| | |||||| | | | ||| ||||||| | |||| ||| ||||| ||||||| |||||||||||| || ||||||||||| | ||| |
|
|
| T |
30988923 |
aacccttcagctacccattgtcgaatcaatctctttgatttaacttcataatcttctggatatattccaaaatacaacaagcatgacttgagagagtaag |
30989022 |
T |
|
| Q |
112 |
gcaaatcatggtaact |
127 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
30989023 |
gcaaatcatcgtaact |
30989038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 21937950 - 21937893
Alignment:
| Q |
63 |
tcttcaggatataatccaaaatacaagaaacatgacttgaggttgcaaggcaaatcat |
120 |
Q |
| |
|
||||| ||||||| |||||||||||| || ||||||||||| | | |||||||||||| |
|
|
| T |
21937950 |
tcttctggatatactccaaaatacaacaagcatgacttgagatagtaaggcaaatcat |
21937893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 22035366 - 22035257
Alignment:
| Q |
11 |
aaacccttcagcaatccattgactagttaatgtctttgaataaactatatagtcttcaggatataatccaaaatacaagaaacatgacttgaggttgcaa |
110 |
Q |
| |
|
|||||||||||| |||||||| | ||| | | ||||||| | |||| | | ||||| ||||||| |||||||||||| || |||| |||||| | | || |
|
|
| T |
22035366 |
aaacccttcagctatccattgtcgagtcactctctttgatttaacttcaaaatcttctggatatactccaaaatacaacaagcatggcttgagatagtaa |
22035267 |
T |
|
| Q |
111 |
ggcaaatcat |
120 |
Q |
| |
|
|||||||||| |
|
|
| T |
22035266 |
ggcaaatcat |
22035257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 22053522 - 22053446
Alignment:
| Q |
44 |
ctttgaataaactatatagtcttcaggatataatccaaaatacaagaaacatgacttgaggttgcaaggcaaatcat |
120 |
Q |
| |
|
|||||||| |||| ||| ||||| ||||||| |||||||||||| || ||||||| ||| | | |||||||||||| |
|
|
| T |
22053522 |
ctttgaattaacttcataatcttctggatatactccaaaatacaacaagcatgactcgagatagtaaggcaaatcat |
22053446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1439 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold1439
Description:
Target: scaffold1439; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 425
Target Start/End: Original strand, 1556 - 1633
Alignment:
| Q |
348 |
ttattgaacaattctaaagatttttcttcggttaaacctttaagttcatgcacttcaacaaaagaagatttcttacaa |
425 |
Q |
| |
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|
| T |
1556 |
ttattaaacaaatcaaatgatttttcttcagttaaaggttgtagttcatgcacttcaataaaagaagatttcttacaa |
1633 |
T |
|
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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 425
Target Start/End: Complemental strand, 40580488 - 40580414
Alignment:
| Q |
351 |
ttgaacaattctaaagatttttcttcggttaaacctttaagttcatgcacttcaacaaaagaagatttcttacaa |
425 |
Q |
| |
|
|||||||| || || ||||||||||| |||||| || |||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
40580488 |
ttgaacaaatcaaatgatttttcttctgttaaaggttgtagttcatgcacttcaataaaagaaaatttcttacaa |
40580414 |
T |
|
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