View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5217-Insertion-3 (Length: 431)
Name: NF5217-Insertion-3
Description: NF5217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5217-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 302
Target Start/End: Complemental strand, 39088524 - 39088232
Alignment:
| Q |
10 |
ttgacagatatagatagagatgggaaggtgagtggggatccattttcatttatcacaacaatatcccaacgnnnnnnnnnntcagactaaagatgttgcc |
109 |
Q |
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| T |
39088524 |
ttgacagatatagatagagatgggaaggtgagtggggatccattttcatttatcacaacaatatcccaacgaaaaaaaaaatcagactaaagatgttgcc |
39088425 |
T |
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| Q |
110 |
ttgatggtctaagcagtgacctcactcaaattaagatgggacaaaacgttaatttcaaatatatgtataccctgcaagaccaaagttggcatgacttggt |
209 |
Q |
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| T |
39088424 |
ttgatggtctaagcagtgacctcactcaaattaagatgggacaaaacgttaatttcaaatatatgtataccctgcaagaccaaagttggcatgacttgtt |
39088325 |
T |
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| Q |
210 |
cattcaagtaatacctcatttgcttnnnnnnnncatgtcacgtttgcatttctcactatttcagaataattatcacgttaaaatatcaagaca |
302 |
Q |
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| T |
39088324 |
cattcaagtaatacctcatttgcttaaaacaaacatgtcacgtttgcatttctcactatttcaaaataattatcacgttaaaatatcaagaca |
39088232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 429
Target Start/End: Complemental strand, 39088147 - 39088104
Alignment:
| Q |
386 |
gacaacctaaaataattgtcaatgtgcacaccgtatctacaaat |
429 |
Q |
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| T |
39088147 |
gacaacctaaaataattgtcaatgtgcacaccgtatctgcaaat |
39088104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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