View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5217-Insertion-5 (Length: 341)
Name: NF5217-Insertion-5
Description: NF5217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5217-Insertion-5 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 37974465 - 37974647
Alignment:
| Q |
8 |
ttcaattactgcgtgtgatccagattcactttagtactatattcatcatgttgttccaattatggtttttaaatattgattcccacttcgctcatgggtg |
107 |
Q |
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| T |
37974465 |
ttcaattactgcgtgtgatccagattcactttaatactatattcatcatgttgttccaattatggtttttaaatattgattcccactttgcttatgggtg |
37974564 |
T |
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| Q |
108 |
tatgtttggattcacgttttaagaagtgtctgtttgattaagcgcctcaagttggcatatgtagcttctgcctaaaggtgattttt |
193 |
Q |
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| T |
37974565 |
aatgtttggattgacgtttt---aagtgtctgtttgattaagcgtcccaagttggcatatgtagcttctgcctaaaggtcattttt |
37974647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 266 - 341
Target Start/End: Original strand, 37974664 - 37974739
Alignment:
| Q |
266 |
tttacattgttgctccaattgcataaaccaaaatttattatcatgtatgaggttgattaaattaaatatgatcttg |
341 |
Q |
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| T |
37974664 |
tttacattgttgctccaattgcacaaaccaaaatttattatcatgtatgaggttgattaaattaaatacgatcttg |
37974739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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