View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5217-Insertion-6 (Length: 312)
Name: NF5217-Insertion-6
Description: NF5217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5217-Insertion-6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 8 - 312
Target Start/End: Original strand, 4665015 - 4665319
Alignment:
| Q |
8 |
agtttatttccatggttttatctaatgtgtataaacaaaccggtactgtattatgcacaaacttattttacaccatttgattactaaatctcgtcatatt |
107 |
Q |
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| T |
4665015 |
agtttattttcatggctttatctaatgtgtataaacaaaccggtactgtattatgcacaaacttattttacaccatttgattacttaatctcgtcatatt |
4665114 |
T |
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| Q |
108 |
tcttttgtctttcttttcccgttcctattcaatatgacaatgcaaaattatatggtatcacttctttttcaggaatgatttgtataacttgttaaaagct |
207 |
Q |
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| T |
4665115 |
tcttttgtctttcttttcccgttcctattcaatatggcaatgcaaaattatatggtatcacttctttttcaggaatgatttgtataacttgttaaaagct |
4665214 |
T |
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| Q |
208 |
accaaagaaaatttgacgtcaaaacttgcttaaagctaccaaagtgtttcacgagaaaaatttgatcttaatttagtctctaattcagcaaacaaaaatt |
307 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4665215 |
accaaaaaaaatttgacgtcaaaacttgcttaaagctaccaaagtgtttcacgaaaaaaatttgatcttaatttagtctctaatacagcaaacaaaaatt |
4665314 |
T |
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| Q |
308 |
tagtg |
312 |
Q |
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| T |
4665315 |
tagtg |
4665319 |
T |
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