View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5217_high_2 (Length: 430)

Name: NF5217_high_2
Description: NF5217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5217_high_2
NF5217_high_2
[»] chr7 (4 HSPs)
chr7 (20-417)||(1344884-1345290)
chr7 (301-415)||(1102852-1102966)
chr7 (56-215)||(1716614-1716771)
chr7 (201-272)||(1103048-1103119)
[»] chr4 (3 HSPs)
chr4 (137-413)||(53469716-53470003)
chr4 (137-240)||(13816904-13817009)
chr4 (137-242)||(32015122-32015229)
[»] chr1 (2 HSPs)
chr1 (181-416)||(24284609-24284844)
chr1 (137-247)||(24272702-24272813)
[»] chr2 (5 HSPs)
chr2 (137-244)||(10128458-10128567)
chr2 (181-249)||(37965589-37965658)
chr2 (193-244)||(15140725-15140777)
chr2 (137-244)||(8761235-8761345)
chr2 (186-243)||(29905717-29905775)
[»] chr3 (1 HSPs)
chr3 (181-246)||(31141359-31141425)
[»] chr6 (1 HSPs)
chr6 (137-247)||(22880032-22880144)


Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 20 - 417
Target Start/End: Complemental strand, 1345290 - 1344884
Alignment:
Q  20 ttactaatctacaggcagagtcattgnnnnnnnttacactataatcaatgataatagatactgaatagtagaagtaataccagcaatagcaaaactcgct 119  Q
    ||||||||||||| ||||||||||||       ||||||||||||| ||||| | | |||||||||||||||||||||| |||||||||||| ||||| |    
T  1345290 ttactaatctacatgcagagtcattgaaaaaaattacactataatcgatgattacatatactgaatagtagaagtaatatcagcaatagcaagactcgtt 1345191  T
Q  120 cactattaactattggtgaaatactaatacacaagatccttatttatatgatcaagtcttacatatttcttcttattctttgatgtgagactttttctaa 219  Q
     |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1345190 aactattaactattggtgaaatactaacacacaagatctttatttatatgatcaagtcttacatatttcttcttattcttcgatgtgagactttttctaa 1345091  T
Q  220 cactaattcaagacatatttcaacaaatctccaccttgacttgaatcctctccggatcatcagatgc---------actcgaagtaccagatgtgccaaa 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||         ||||||| ||||||||||||||||    
T  1345090 cactaattcaagacatatttcaacaaatctccaccttgacttgaatcctctccgaataatcagatgcaccagatgtactcgaattaccagatgtgccaaa 1344991  T
Q  311 tgcattacattgaatgctcatatgggcctgctttgcctcaggccttgcccctctgagggcaatcaacgacttctatcattgagctagttcaaacaatgtt 410  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1344990 tgcattacattgaatgctcatatgggcctgctctgcctcaggccttgcccctctgagggcaatcaacgacttctatcattgaactagttcaaacaatgtt 1344891  T
Q  411 gaaactc 417  Q
    |||||||    
T  1344890 gaaactc 1344884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 301 - 415
Target Start/End: Complemental strand, 1102966 - 1102852
Alignment:
Q  301 atgtgccaaatgcattacattgaatgctcatatgggcctgctttgcctcaggccttgcccctctgagggcaatcaacgacttctatcattgagctagttc 400  Q
    |||||||| ||||||||||  |||||  || ||| ||||||| ||||||||||||||||||||  |||||||||||| ||||||| |||||||| |||||    
T  1102966 atgtgccagatgcattacacagaatgtccagatgagcctgctctgcctcaggccttgcccctcccagggcaatcaacaacttctaacattgagcaagttc 1102867  T
Q  401 aaacaatgttgaaac 415  Q
    ||||||| |||||||    
T  1102866 aaacaatattgaaac 1102852  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 56 - 215
Target Start/End: Original strand, 1716614 - 1716771
Alignment:
Q  56 cactataatcaatgataatagatactgaatagtagaagtaataccagcaatagcaaaactcgctcactattaactattggtgaaatactaatacacaaga 155  Q
    |||||||||| || || ||| ||||||||||||||| ||||||||||| |||  ||||||| || |||||| |   |    |||||| ||| ||||||||    
T  1716614 cactataatcgattatcatatatactgaatagtagaggtaataccagctataaaaaaactcactaactattga---tgcaagaaatattaacacacaaga 1716710  T
Q  156 tccttatttatatgatcaagtc-ttacatatttcttcttattctttgatgtgagacttttt 215  Q
     | ||||||||||| ||||||| |||||||||| ||| ||||||| ||||||||| |||||    
T  1716711 cctttatttatatggtcaagtctttacatattttttcatattcttcgatgtgagaattttt 1716771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 201 - 272
Target Start/End: Complemental strand, 1103119 - 1103048
Alignment:
Q  201 gatgtgagactttttct-aacactaattcaagacatatttcaacaaatctccaccttgacttgaatcctctcc 272  Q
    |||||||||| |||||  |||||||||||||| ||||||||| |||||||||||||||||||||||| |||||    
T  1103119 gatgtgagacattttcccaacactaattcaaggcatatttca-caaatctccaccttgacttgaatcttctcc 1103048  T

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Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 137 - 413
Target Start/End: Original strand, 53469716 - 53470003
Alignment:
Q  137 gaaatactaatacacaagatccttatttatatgatcaagtctta-catatttcttcttattctttgatgtgagactttttct-aacactaattcaagaca 234  Q
    |||||||||| ||||||||   |||||||||||| ||||||||  ||||||||||| |||| | ||||||   || |||||  |||| ||||| ||| ||    
T  53469716 gaaatactaacacacaagacttttatttatatgaccaagtctttgcatatttcttcatattatctgatgtagaacattttcccaacattaattaaaggca 53469815  T
Q  235 tatttcaacaaatctccaccttgacttgaatcctctccggat---------catcagatgcactcgaagtaccagatgtgccaaatgcattacattgaat 325  Q
    |||||||||||||||||| | ||||||||||| ||||| |||         || |||||||||| || |||||||||||| || ||||||||||  ||||    
T  53469816 tatttcaacaaatctccatcgtgacttgaatcttctcctgataaccagatgcaccagatgcacttgacgtaccagatgtggcagatgcattacacagaat 53469915  T
Q  326 gctcatatgggcctgctttgcctcaggccttgcccctctgagggcaatcaacgacttctatcattgagctagttcaaacaatgttgaa 413  Q
    || || ||| |||| || ||||||||||||||||||||  |||||||||||| ||||||| |||||||| ||||||||||||||||||    
T  53469916 gcccagatgagcctactctgcctcaggccttgcccctcctagggcaatcaacaacttctaacattgagcaagttcaaacaatgttgaa 53470003  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 240
Target Start/End: Complemental strand, 13817009 - 13816904
Alignment:
Q  137 gaaatactaatacacaagatccttatttatatgatcaagtctta-catatttcttcttattctttgatgtgagacttttt-ctaacactaattcaagaca 234  Q
    |||||| ||| ||| ||| || |||||||||||| ||||||||  ||||||||||| ||||||| ||||||||||||||| | |||| ||||||||  ||    
T  13817009 gaaataataacacataaggtctttatttatatgaccaagtcttcgcatatttcttcatattcttcgatgtgagactttttcccaacattaattcaatgca 13816910  T
Q  235 tatttc 240  Q
    ||||||    
T  13816909 tatttc 13816904  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 32015229 - 32015122
Alignment:
Q  137 gaaatactaatacacaagatccttatttatatgatcaagtctta-catatttcttcttattctttgatgtgagactttttct-aacactaattcaagaca 234  Q
    |||||||||| |||||| | | |||||||| |   ||||||||  ||||| ||||| |||| ||| ||||||||||||||   |||||||||||||||||    
T  32015229 gaaatactaacacacaaaacctttatttatgttgccaagtctttgcatatatcttcctattattttatgtgagacttttttacaacactaattcaagaca 32015130  T
Q  235 tatttcaa 242  Q
    ||||||||    
T  32015129 tatttcaa 32015122  T

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Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 181 - 416
Target Start/End: Complemental strand, 24284844 - 24284609
Alignment:
Q  181 catatttcttcttattctttgatgtgagactttttct-aacactaattcaagacatatttcaacaaatctccaccttgacttgaatcctctccggatcat 279  Q
    ||||||| ||| |||||| ||||||| |||||||||  || | ||||||||| ||||||||||||||| |||||||||||||||||||||||| ||| |     
T  24284844 catatttgttcatattctctgatgtgggactttttcccaatattaattcaaggcatatttcaacaaatttccaccttgacttgaatcctctccagataac 24284745  T
Q  280 cagatgcactcgaa-gtaccagatgtgccaaatgcattacattgaatgctcatatgggcctgctttgcctcaggccttgcccctctgagggcaatcaacg 378  Q
    |||   ||| |||| ||||  || || ||| | ||||||||   ||| | |||||| | ||||| ||||| ||||||||||||||   ||| |||||||     
T  24284744 caggaacac-cgaatgtactcgaagtaccagaagcattacacaaaatacccatatgagtctgctctgccttaggccttgcccctc-atgggaaatcaaca 24284647  T
Q  379 acttctatcattgagctagttcaaacaatgttgaaact 416  Q
     |||||| |||||||| |||||||||||||||||||||    
T  24284646 gcttctaacattgagcaagttcaaacaatgttgaaact 24284609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 24272813 - 24272702
Alignment:
Q  137 gaaatactaatacacaagatccttatttatatgatcaagtctta-catatttcttcttattctttgatgtgagactttttctaacactaattcaagacat 235  Q
    |||||||||| |||||||  | |||| |||||  |||||||||  ||||||||||| || |||  ||||||||| |||||| ||||||||||||||||||    
T  24272813 gaaatactaacacacaaggcctttatatatattgtcaagtctttgcatatttcttcatactctacgatgtgagattttttccaacactaattcaagacat 24272714  T
Q  236 atttcaacaaat 247  Q
    ||||||||||||    
T  24272713 atttcaacaaat 24272702  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 244
Target Start/End: Complemental strand, 10128567 - 10128458
Alignment:
Q  137 gaaatactaatacacaagatccttatttatatgatcaagtcttac-atatttcttcttattctttgatgtgagac-tttttctaacactaattcaagaca 234  Q
    |||||||||| ||||||||   |||||||||||| |||||||| | |||||||||| ||||||  ||||||  |  |||||| |||||||||||| ||||    
T  10128567 gaaatactaacacacaagacttttatttatatgaccaagtctttccatatttcttcatattctccgatgtggaatatttttccaacactaattcaggaca 10128468  T
Q  235 tatttcaaca 244  Q
    ||||||||||    
T  10128467 tatttcaaca 10128458  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 249
Target Start/End: Original strand, 37965589 - 37965658
Alignment:
Q  181 catatttcttcttattctttgatgtgagactttttct-aacactaattcaagacatatttcaacaaatct 249  Q
    ||||||||||| |||| |  |||||||||| |||||  |||||||||||||| |||||||||||||||||    
T  37965589 catatttcttcatattatccgatgtgagacattttcccaacactaattcaaggcatatttcaacaaatct 37965658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 15140777 - 15140725
Alignment:
Q  193 tattctttgatgtgagac-tttttctaacactaattcaagacatatttcaaca 244  Q
    |||| ||||||||| ||| |||||| |||||||||||||||||||||||||||    
T  15140777 tattatttgatgtgggacatttttccaacactaattcaagacatatttcaaca 15140725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 244
Target Start/End: Original strand, 8761235 - 8761345
Alignment:
Q  137 gaaatactaatacacaagatccttatttatatgatcaa-gtctta-catatttcttcttattctttgatgtgagactttttct-aacactaattcaagac 233  Q
    |||||||||| ||||||||   |||||||||||| ||| || ||  ||||||||||| |||| | ||||||| ||| |||||  ||||| ||||||||||    
T  8761235 gaaatactaacacacaagacttttatttatatgaccaaagtatttgcatatttcttcatattatctgatgtgggacattttcccaacacaaattcaagac 8761334  T
Q  234 atatttcaaca 244  Q
    |||||||||||    
T  8761335 atatttcaaca 8761345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 29905717 - 29905775
Alignment:
Q  186 ttcttcttattctttgatgtgagacttttt-ctaacactaattcaagacatatttcaac 243  Q
    ||||||||||||| | |||||||||||||| || |||||||||||||  ||||||||||    
T  29905717 ttcttcttattctcttatgtgagactttttccttacactaattcaaggtatatttcaac 29905775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 31141425 - 31141359
Alignment:
Q  181 catatttcttcttattctttgatgtgagact-ttttctaacactaattcaagacatatttcaacaaa 246  Q
    ||||||||||| |||||| |||||||||||| |||||||||| || || |||  |||||||||||||    
T  31141425 catatttcttcctattctctgatgtgagacttttttctaacaatattttaagttatatttcaacaaa 31141359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 22880032 - 22880144
Alignment:
Q  137 gaaatactaatacacaagatccttatttatatgatcaagtctt-acatatttcttcttattctttgatgtgagacttttt-ctaacactaattcaagaca 234  Q
    |||||| ||| |||||| | | |||||||||||| ||||| || | |||||||||  |||||| || |||| |||||||| | ||||||||||||||  |    
T  22880032 gaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctttctattctctgttgtgtgacttttttccaacactaattcaaggta 22880131  T
Q  235 tatttcaacaaat 247  Q
     ||||||||||||    
T  22880132 aatttcaacaaat 22880144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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