View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5217_high_6 (Length: 259)
Name: NF5217_high_6
Description: NF5217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5217_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 10 - 178
Target Start/End: Original strand, 32269770 - 32269940
Alignment:
| Q |
10 |
ttgcagtagaccacattccatgtttacaaattatatccgcat--gaaatctccacactcaatcataccgatccaacggccacaatctcactgaaatcaca |
107 |
Q |
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| T |
32269770 |
ttgcagtagaccacattccatgattacaaattatatccccatatgaaatctccacactcaatcacactgatccaacggccaaaatctcactaaaatcaca |
32269869 |
T |
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| Q |
108 |
aaacaacatgaggcaatgcaaatgcttatgatctataacaactataaaataggaatgatagttatactaaa |
178 |
Q |
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| T |
32269870 |
aaacaatatgaagcaatgcaaatgcttatgatctataacaactataaaatagcaatggtagttatactaaa |
32269940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 32809840 - 32809908
Alignment:
| Q |
77 |
atccaacggccacaatctcactgaaatcacaaaacaacatgaggcaatgcaaatgcttatgatctataa |
145 |
Q |
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| T |
32809840 |
atccaacggccacaagttcactcgaatcgcaaaacaacatgaggcaaagcaaatgcttatgatctataa |
32809908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 257
Target Start/End: Original strand, 32270283 - 32270318
Alignment:
| Q |
222 |
tttcaatataagtcgtcctttctcctatgcttctac |
257 |
Q |
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| T |
32270283 |
tttcaatataagtcgtcctttctcctatgctactac |
32270318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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