View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5217_low_3 (Length: 412)
Name: NF5217_low_3
Description: NF5217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5217_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 13 - 392
Target Start/End: Original strand, 19397392 - 19397770
Alignment:
| Q |
13 |
aatataagaaaatacaatgttgtggaaaacccacacataacccactctatagtctaaaatttgatttttctaacttaattactcatatgatgtcatctaa |
112 |
Q |
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| T |
19397392 |
aatataagaaaatacaatgttgtggaaaacccacacataacccactctatagtctaaaatttgatttttctaacttaattactcatatgatgtcatctaa |
19397491 |
T |
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| Q |
113 |
ttatcccagttctattagttgttttattttgcagaccatatttgatgtcatctaagtacctcagttatatgagttggtttaattgcacttcaaatttttc |
212 |
Q |
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| T |
19397492 |
ctatcccagttctattgattgttttattttgcacaacatatttgatgtcatctaagtacctcagttatatgagttggtttaattgcacttcaaatttttc |
19397591 |
T |
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| Q |
213 |
tgtccagttccatcctaactatacaaatcagcatttgtacaacaccnnnnnnnnnnnnngtaaatagtttgtcttttgtatagctcaagaaaaaggcagg |
312 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
19397592 |
tgtccggttccatcctaactatacaaatcagcatttgtacaacaccaaaaaggaaaaaagtaaatag-ttgtcttttgtatagctcaagaaaaaggcagg |
19397690 |
T |
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| Q |
313 |
tacctttccactcttctcaacatttgtcatcatacatttctatcatactactacaaagtactaacactacaacacattac |
392 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19397691 |
taccttttcactcttctcaacatttttcatcatacatttctatcatactactacaaagtactaacactacaacacattac |
19397770 |
T |
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