View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5217_low_4 (Length: 311)

Name: NF5217_low_4
Description: NF5217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5217_low_4
NF5217_low_4
[»] chr7 (16 HSPs)
chr7 (3-187)||(1344685-1344869)
chr7 (226-304)||(32996528-32996608)
chr7 (254-301)||(1344638-1344686)
chr7 (223-291)||(49078226-49078294)
chr7 (224-291)||(8062911-8062978)
chr7 (220-291)||(18942731-18942802)
chr7 (226-291)||(5358207-5358272)
chr7 (225-288)||(34703628-34703691)
chr7 (224-263)||(40355139-40355178)
chr7 (218-292)||(12927847-12927921)
chr7 (221-291)||(26904941-26905010)
chr7 (221-291)||(30601293-30601363)
chr7 (226-291)||(39608622-39608687)
chr7 (225-289)||(10228531-10228595)
chr7 (231-291)||(29196758-29196818)
chr7 (223-291)||(38838687-38838755)
[»] chr8 (8 HSPs)
chr8 (224-295)||(21600674-21600745)
chr8 (220-295)||(8340342-8340417)
chr8 (220-304)||(21601902-21601987)
chr8 (211-263)||(44362723-44362777)
chr8 (220-287)||(2988389-2988456)
chr8 (222-291)||(21600398-21600467)
chr8 (226-291)||(28802283-28802348)
chr8 (223-291)||(4586747-4586815)
[»] chr5 (8 HSPs)
chr5 (218-291)||(23159021-23159094)
chr5 (226-291)||(29686426-29686491)
chr5 (225-291)||(16127049-16127115)
chr5 (222-291)||(6217376-6217445)
chr5 (226-291)||(6217684-6217749)
chr5 (223-292)||(26675309-26675378)
chr5 (223-292)||(26946917-26946986)
chr5 (227-291)||(29714724-29714789)
[»] chr2 (6 HSPs)
chr2 (223-291)||(40124261-40124329)
chr2 (218-291)||(20167633-20167706)
chr2 (232-286)||(5708985-5709039)
chr2 (222-284)||(39273399-39273461)
chr2 (226-290)||(8940177-8940241)
chr2 (228-292)||(15818626-15818693)
[»] chr3 (15 HSPs)
chr3 (220-291)||(46848411-46848482)
chr3 (218-304)||(30843830-30843918)
chr3 (213-291)||(621900-621976)
chr3 (223-292)||(51889754-51889823)
chr3 (226-284)||(30843539-30843597)
chr3 (117-214)||(2535048-2535145)
chr3 (226-283)||(21568301-21568358)
chr3 (226-291)||(40619231-40619296)
chr3 (221-289)||(21568576-21568644)
chr3 (251-291)||(38989754-38989794)
chr3 (218-288)||(12832033-12832101)
chr3 (220-291)||(39336512-39336583)
chr3 (226-291)||(14984407-14984471)
chr3 (243-291)||(1324507-1324555)
chr3 (231-291)||(48660559-48660619)
[»] chr1 (14 HSPs)
chr1 (220-290)||(35684931-35685001)
chr1 (25-112)||(24284484-24284571)
chr1 (218-281)||(34177536-34177599)
chr1 (220-289)||(45392282-45392351)
chr1 (226-289)||(27900946-27901009)
chr1 (232-291)||(45679510-45679569)
chr1 (233-291)||(19464222-19464280)
chr1 (225-290)||(26515039-26515104)
chr1 (220-292)||(6728036-6728108)
chr1 (220-292)||(31134764-31134836)
chr1 (226-292)||(36144785-36144851)
chr1 (224-273)||(32669783-32669832)
chr1 (230-291)||(34826801-34826862)
chr1 (227-291)||(27900620-27900684)
[»] chr4 (17 HSPs)
chr4 (218-291)||(12034374-12034447)
chr4 (226-291)||(46804755-46804820)
chr4 (220-304)||(31903511-31903597)
chr4 (223-291)||(4161619-4161687)
chr4 (222-291)||(8171002-8171071)
chr4 (218-291)||(17381276-17381349)
chr4 (220-291)||(11840075-11840146)
chr4 (229-292)||(17381590-17381653)
chr4 (226-291)||(29223454-29223519)
chr4 (222-291)||(30316043-30316112)
chr4 (220-291)||(17753252-17753324)
chr4 (1-53)||(53470020-53470072)
chr4 (221-291)||(11839763-11839833)
chr4 (226-291)||(29223115-29223180)
chr4 (218-291)||(32934181-32934254)
chr4 (219-255)||(3892515-3892551)
chr4 (224-284)||(24806777-24806837)
[»] chr6 (6 HSPs)
chr6 (220-290)||(18354790-18354860)
chr6 (227-291)||(7792013-7792077)
chr6 (226-285)||(31141917-31141976)
chr6 (218-292)||(6524836-6524910)
chr6 (241-291)||(34937444-34937494)
chr6 (223-291)||(10067762-10067830)
[»] scaffold0329 (1 HSPs)
scaffold0329 (226-291)||(6196-6261)
[»] scaffold0086 (1 HSPs)
scaffold0086 (225-295)||(21894-21964)


Alignment Details
Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 3 - 187
Target Start/End: Complemental strand, 1344869 - 1344685
Alignment:
Q  3 gcttggtaaacttatcggctgggttgtctgatgtatccactttgtttaccttgatcatcttcttagttgtcagaaaatggtaattcacatcaatgtgttt 102  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1344869 gcttggtaaacttatcggctggattgtctgatgtatccactttgtttaccttgatcatcttcttagttgtcagaaaatggtaattcacatcaatgtgttt 1344770  T
Q  103 tgtcctctcaatacgtgtgattgcaaacctaacatgatgtctcacaattagcatctacaaatatctttactcatgttccatacaa 187  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||    
T  1344769 tgtcctctcaatatgtgtgattgcaaacctaacatgatgtctcacaatcagcatctacaaatatctttactcgtgttccttacaa 1344685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 304
Target Start/End: Complemental strand, 32996608 - 32996528
Alignment:
Q  226 taatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaattc--aaatagtctctg 304  Q
    |||| |||| ||||||| |||||||| |||||| ||||||||||||||| |||||| ||||||||||  ||||||||||||    
T  32996608 taatggtcattttggtccttgaatgtctaatgaatagtgacaatagtccctcaatgcatcaaaattctaaaatagtctctg 32996528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 254 - 301
Target Start/End: Complemental strand, 1344686 - 1344638
Alignment:
Q  254 aatgagtagtgacaatagtccatcaatgtatcaaaa-ttcaaatagtct 301  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  1344686 aatgagtagtcacaatagtccatcaatgtatcaaaatttcaaatagtct 1344638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 223 - 291
Target Start/End: Complemental strand, 49078294 - 49078226
Alignment:
Q  223 gggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    ||||||| |||||||| || | | ||||||||||||||||| |||||||| | ||||||||||||||||    
T  49078294 gggtaattgtcactttcgtttcttaatgtgtaatgagtagttacaatagttcctcaatgtatcaaaatt 49078226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 291
Target Start/End: Complemental strand, 8062978 - 8062911
Alignment:
Q  224 ggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    ||||||||| | ||||||| |||||||||||| ||||||| |||||||||  ||||||||| ||||||    
T  8062978 ggtaatagttattttggtccttgaatgtgtaacgagtagtcacaatagtctgtcaatgtattaaaatt 8062911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 291
Target Start/End: Original strand, 18942731 - 18942802
Alignment:
Q  220 aaggggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    ||||||||||||||| |||||||  ||||||||||| || |||| | |||||||  ||||||||||||||||    
T  18942731 aaggggtaatagtcattttggtccctgaatgtgtaaggaatagtcataatagtcactcaatgtatcaaaatt 18942802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 5358207 - 5358272
Alignment:
Q  226 taatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    |||||||||||||  ||  | |||||||||||| |||| |||||||||| ||||||||||||||||    
T  5358207 taatagtcactttcatccctaaatgtgtaatgaatagttacaatagtccttcaatgtatcaaaatt 5358272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 288
Target Start/End: Original strand, 34703628 - 34703691
Alignment:
Q  225 gtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaa 288  Q
    |||||||||| |||| ||  | ||||| ||| ||||||| ||||||||||||||||||||||||    
T  34703628 gtaatagtcattttgatccataaatgtataacgagtagtcacaatagtccatcaatgtatcaaa 34703691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 40355178 - 40355139
Alignment:
Q  224 ggtaatagtcactttggtctttgaatgtgtaatgagtagt 263  Q
    ||||||||||| |||||||||||||||||||| |||||||    
T  40355178 ggtaatagtcattttggtctttgaatgtgtaacgagtagt 40355139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 292
Target Start/End: Complemental strand, 12927921 - 12927847
Alignment:
Q  218 aaaaggggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaattc 292  Q
    |||| |||||| | ||||||| ||| |||||||||||   |||||| |||||||||| || ||||||||||||||    
T  12927921 aaaatgggtaacattcactttagtccttgaatgtgtagcaagtagtcacaatagtccttcgatgtatcaaaattc 12927847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 291
Target Start/End: Original strand, 26904941 - 26905010
Alignment:
Q  221 aggggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    |||||||||||| ||||||| |  |||||||||||| | |||| | |||||| ||||||||||||||||||    
T  26904941 aggggtaatagtgactttggaccatgaatgtgtaataattagtcataatagt-catcaatgtatcaaaatt 26905010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 291
Target Start/End: Original strand, 30601293 - 30601363
Alignment:
Q  221 aggggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    |||||||||||| |||||||||  | |||||||||||| |||| | |||||| | ||||||| ||||||||    
T  30601293 aggggtaatagttactttggtccctaaatgtgtaatgattagtcataatagttcttcaatgtttcaaaatt 30601363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 39608687 - 39608622
Alignment:
Q  226 taatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    ||||| ||| ||| ||| |||||||||||| ||||||| ||||||||   ||||||||||||||||    
T  39608687 taataatcattttagtccttgaatgtgtaaggagtagttacaatagtttttcaatgtatcaaaatt 39608622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 10228531 - 10228595
Alignment:
Q  225 gtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaa 289  Q
    |||||| ||| |||||||||| ||||||||| || |||| ||||||  || ||||||||||||||    
T  10228531 gtaataatcattttggtctttaaatgtgtaacgattagttacaataacccttcaatgtatcaaaa 10228595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 29196758 - 29196818
Alignment:
Q  231 gtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    |||||||||||| | |||||||||| || |||| ||||||||   ||||||||||||||||    
T  29196758 gtcactttggtcctcgaatgtgtaacgaatagtcacaatagtttttcaatgtatcaaaatt 29196818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 291
Target Start/End: Complemental strand, 38838755 - 38838687
Alignment:
Q  223 gggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    |||||||| | | |||||||  ||||||||||| ||||||| |||||| || |||||||||| ||||||    
T  38838755 gggtaataattattttggtccctgaatgtgtaacgagtagtcacaatattctatcaatgtattaaaatt 38838687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 224 - 295
Target Start/End: Complemental strand, 21600745 - 21600674
Alignment:
Q  224 ggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaattcaaa 295  Q
    ||||||||||| |||||||| |||||||||||||| |||| | |||||||||||||||||||||||||||||    
T  21600745 ggtaatagtcaatttggtctctgaatgtgtaatgattagtcataatagtccatcaatgtatcaaaattcaaa 21600674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 295
Target Start/End: Complemental strand, 8340417 - 8340342
Alignment:
Q  220 aaggggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaattcaaa 295  Q
    ||||| ||||||||| ||||||  |||||||| ||||||||||| |||| ||||| | ||||||||||||||||||    
T  8340417 aagggttaatagtcattttggttcttgaatgtataatgagtagtcacaacagtcctttaatgtatcaaaattcaaa 8340342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 304
Target Start/End: Original strand, 21601902 - 21601987
Alignment:
Q  220 aaggggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaattc--aaatagtctctg 304  Q
    |||||||||| |||| ||||||| | |||| |||||  | |||| ||||||||||||||||||||||||||||  ||||||||||||    
T  21601902 aaggggtaatggtcattttggtcct-gaatatgtaacaaatagtcacaatagtccatcaatgtatcaaaattccaaaatagtctctg 21601987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 44362777 - 44362723
Alignment:
Q  211 ctaaaccaaa--aggggtaatagtcactttggtctttgaatgtgtaatgagtagt 263  Q
    ||||||||||  ||||||||||||||||||||||| |||| ||||||||||||||    
T  44362777 ctaaaccaaattaggggtaatagtcactttggtctctgaacgtgtaatgagtagt 44362723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 287
Target Start/End: Complemental strand, 2988456 - 2988389
Alignment:
Q  220 aaggggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaa 287  Q
    ||||| ||||||| |||||||||| ||||| ||||||||||||| |  ||||||  ||||||||||||    
T  2988456 aagggataatagttactttggtctctgaatatgtaatgagtagtcattatagtcattcaatgtatcaa 2988389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 21600398 - 21600467
Alignment:
Q  222 ggggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    |||| ||| |||||||| || | |||||||| ||||||| || |||||||||| | ||||||||||||||    
T  21600398 ggggaaatggtcacttttgtttctgaatgtgcaatgagttgtcacaatagtcccttaatgtatcaaaatt 21600467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 28802283 - 28802348
Alignment:
Q  226 taatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    ||||||||| ||| |||  |||||||||||  | |||| ||||||||||||| |||||||||||||    
T  28802283 taatagtcattttagtcgctgaatgtgtaacaaatagtcacaatagtccatcgatgtatcaaaatt 28802348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 291
Target Start/End: Original strand, 4586747 - 4586815
Alignment:
Q  223 gggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    |||||||||| | |||| || |||||||||||| ||||||| |||||||||  | ||||||| ||||||    
T  4586747 gggtaatagttattttgatccttgaatgtgtaacgagtagttacaatagtctcttaatgtattaaaatt 4586815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 218 - 291
Target Start/End: Original strand, 23159021 - 23159094
Alignment:
Q  218 aaaaggggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    ||||||||||||||||||||| |||  |||||||||||||| |||| | |||||||||||||||||||||||||    
T  23159021 aaaaggggtaatagtcactttagtccctgaatgtgtaatgattagttataatagtccatcaatgtatcaaaatt 23159094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 29686426 - 29686491
Alignment:
Q  226 taatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    |||||||||||||||||  ||||||| ||||||||||| |||||| ||| ||||||||| ||||||    
T  29686426 taatagtcactttggtccatgaatgtataatgagtagtcacaataatccctcaatgtattaaaatt 29686491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 291
Target Start/End: Original strand, 16127049 - 16127115
Alignment:
Q  225 gtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    |||||||||| |||||||  | ||||||||| ||||||| |||||||||  |||| |||||||||||    
T  16127049 gtaatagtcattttggtccctaaatgtgtaaggagtagtcacaatagtctctcaaagtatcaaaatt 16127115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 6217376 - 6217445
Alignment:
Q  222 ggggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    ||||||||||||| |||| | ||||||| |||||  |||||| |||||||||  | ||||||||||||||    
T  6217376 ggggtaatagtcaatttgatttttgaatatgtaaaaagtagttacaatagtcacttaatgtatcaaaatt 6217445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 6217749 - 6217684
Alignment:
Q  226 taatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    ||||||||| |||||||  ||||||||||  || |||  |||||||||| ||||||||||||||||    
T  6217749 taatagtcattttggtccatgaatgtgtagcgaatagccacaatagtccctcaatgtatcaaaatt 6217684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 292
Target Start/End: Complemental strand, 26675378 - 26675309
Alignment:
Q  223 gggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaattc 292  Q
    |||||||||||||||||||  ||||||||||||||| || | |||||| ||  | |||||||||| ||||    
T  26675378 gggtaatagtcactttggttcttgaatgtgtaatgactaatcacaataatcttttaatgtatcaatattc 26675309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 292
Target Start/End: Complemental strand, 26946986 - 26946917
Alignment:
Q  223 gggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaattc 292  Q
    |||||||||||||||||||  ||||||||||||||| || | |||||| ||  | |||||||||| ||||    
T  26946986 gggtaatagtcactttggttcttgaatgtgtaatgactaatcacaataatcttttaatgtatcaatattc 26946917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 291
Target Start/End: Complemental strand, 29714789 - 29714724
Alignment:
Q  227 aatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtc-catcaatgtatcaaaatt 291  Q
    |||||||| |||||| |||||||||||||  |||||| |||||||||  ||||||||||| |||||    
T  29714789 aatagtcattttggtttttgaatgtgtaaccagtagttacaatagtcttatcaatgtatcgaaatt 29714724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 223 - 291
Target Start/End: Original strand, 40124261 - 40124329
Alignment:
Q  223 gggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    |||||||||||||||||||| |||||||||||| ||||||| |||||||||||| |||||||| |||||    
T  40124261 gggtaatagtcactttggtccttgaatgtgtaacgagtagtcacaatagtccattaatgtatcgaaatt 40124329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 291
Target Start/End: Complemental strand, 20167706 - 20167633
Alignment:
Q  218 aaaaggggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    ||||| ||||||||||| |||||||||| |||||||||  |||||| |||||||||  |||||| |||||||||    
T  20167706 aaaagaggtaatagtcattttggtctttaaatgtgtaacaagtagtcacaatagtcactcaatgcatcaaaatt 20167633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 286
Target Start/End: Original strand, 5708985 - 5709039
Alignment:
Q  232 tcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatca 286  Q
    ||||||||||| ||||||||||||||| || | |||||||||| |||||||||||    
T  5708985 tcactttggtccttgaatgtgtaatgattaatcacaatagtccttcaatgtatca 5709039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 39273461 - 39273399
Alignment:
Q  222 ggggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtat 284  Q
    |||||||||| || |||||||| ||||||||||||||||||  |||||||||| | |||||||    
T  39273461 ggggtaatagccattttggtctctgaatgtgtaatgagtagccacaatagtccctaaatgtat 39273399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 8940241 - 8940177
Alignment:
Q  226 taatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaat 290  Q
    ||||| |||||||||| | |||||||||||| |||||| |||||||| | |||||| ||||||||    
T  8940241 taataatcactttggtgtctgaatgtgtaataagtagtcacaatagttcttcaatgcatcaaaat 8940177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 15818693 - 15818626
Alignment:
Q  228 atagtcactttggtctttgaatgtgtaatgagtagtgacaatagtcca---tcaatgtatcaaaattc 292  Q
    ||||||| | |||||||| |||||||||| |||||| ||||||||||    |||||||||||||||||    
T  15818693 atagtcattgtggtctttaaatgtgtaataagtagtcacaatagtcctccttcaatgtatcaaaattc 15818626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 291
Target Start/End: Complemental strand, 46848482 - 46848411
Alignment:
Q  220 aaggggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    |||||||||||||||||||||||  ||||||||||||||||||| | |||||| | ||||||||||||||||    
T  46848482 aaggggtaatagtcactttggtccctgaatgtgtaatgagtagtcaaaatagttcctcaatgtatcaaaatt 46848411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 218 - 304
Target Start/End: Complemental strand, 30843918 - 30843830
Alignment:
Q  218 aaaaggggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaattc--aaatagtctctg 304  Q
    |||||| |||||||||||||||||   ||||||||||||||||||| |||||||||  | |||||||||||||||  ||||||||||||    
T  30843918 aaaaggagtaatagtcactttggttcctgaatgtgtaatgagtagtcacaatagtctcttaatgtatcaaaattccaaaatagtctctg 30843830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 213 - 291
Target Start/End: Complemental strand, 621976 - 621900
Alignment:
Q  213 aaaccaaaaggggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    |||| ||||||  |||||||||||||||||| ||||||||||||||||||| | |||||||  ||||||||||||||||    
T  621976 aaactaaaaggaataatagtcactttggtctctgaatgtgtaatgagtagtcataatagtc--tcaatgtatcaaaatt 621900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 223 - 292
Target Start/End: Original strand, 51889754 - 51889823
Alignment:
Q  223 gggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaattc 292  Q
    |||||||||||| |||| ||| ||||||||||| ||||||| |||||||||  |||||||||||||||||    
T  51889754 gggtaatagtcattttgatctctgaatgtgtaaggagtagtcacaatagtctttcaatgtatcaaaattc 51889823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 284
Target Start/End: Original strand, 30843539 - 30843597
Alignment:
Q  226 taatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtat 284  Q
    ||||| ||||||||||| ||| |||||||||||||||| |||||||||  |||||||||    
T  30843539 taatactcactttggtccttgcatgtgtaatgagtagtcacaatagtctttcaatgtat 30843597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 214
Target Start/End: Complemental strand, 2535145 - 2535048
Alignment:
Q  117 gtgtgattgcaaacctaacatgatgtctcacaattagcatctacaaatatctttactcatgttccatacaaaagaagtctatatctagaactccctaa 214  Q
    ||||||||  |||||||||  |||||||  ||| || ||||||||||| | | ||||||||| || |||||| ||||| ||||||||| |||||||||    
T  2535145 gtgtgattttaaacctaacccgatgtcttgcaactaccatctacaaatgtttctactcatgtcccttacaaatgaagtgtatatctagcactccctaa 2535048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 283
Target Start/End: Original strand, 21568301 - 21568358
Alignment:
Q  226 taatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgta 283  Q
    |||||||||||||||||||| ||| ||||||||||||| |||||| ||  ||||||||    
T  21568301 taatagtcactttggtcttttaatatgtaatgagtagtcacaataatctctcaatgta 21568358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 40619296 - 40619231
Alignment:
Q  226 taatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    ||||||| |||||| || |||||||||||||||||||| | | || ||| ||||||||||||||||    
T  40619296 taatagttactttgatccttgaatgtgtaatgagtagtcatattaatccctcaatgtatcaaaatt 40619231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 289
Target Start/End: Complemental strand, 21568644 - 21568576
Alignment:
Q  221 aggggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaa 289  Q
    |||| ||||||||||||| |||  || ||||||||||| ||||||||||||||   |||||||||||||    
T  21568644 agggataatagtcactttcgtccctgcatgtgtaatgaatagtgacaatagtctcccaatgtatcaaaa 21568576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 38989754 - 38989794
Alignment:
Q  251 tgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    |||||||| |||| |||||||||||||||||||||||||||    
T  38989754 tgtaatgactagtcacaatagtccatcaatgtatcaaaatt 38989794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 288
Target Start/End: Original strand, 12832033 - 12832101
Alignment:
Q  218 aaaaggggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaa 288  Q
    ||||||||||||||| |||||||||| ||||  |||||||| || | |||||||||| | |||||||||||    
T  12832033 aaaaggggtaatagttactttggtctctgaa--tgtaatgaataattacaatagtcccttaatgtatcaaa 12832101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 291
Target Start/End: Original strand, 39336512 - 39336583
Alignment:
Q  220 aaggggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    |||||||||| ||| ||||||||  ||||| |||||||| |||| ||| |||||| | ||||||||||||||    
T  39336512 aaggggtaattgtctctttggtccatgaatatgtaatgattagttacactagtcctttaatgtatcaaaatt 39336583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 14984407 - 14984471
Alignment:
Q  226 taatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    ||||||||| ||||||| | |||||||||| ||||||| |||||||||| ||||| |||| |||||    
T  14984407 taatagtcattttggtcct-gaatgtgtaacgagtagtcacaatagtccctcaatatatcgaaatt 14984471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 291
Target Start/End: Original strand, 1324507 - 1324555
Alignment:
Q  243 tttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    ||||||||||||||||||| | |||||| ||| || |||||||||||||    
T  1324507 tttgaatgtgtaatgagtaatcacaataatccttcgatgtatcaaaatt 1324555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 48660559 - 48660619
Alignment:
Q  231 gtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    ||||| |||||||||||||| ||||||| |||| |||||| ||  ||| ||||||||||||    
T  48660559 gtcacgttggtctttgaatgcgtaatgattagttacaataatcactcagtgtatcaaaatt 48660619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 220 - 290
Target Start/End: Complemental strand, 35685001 - 35684931
Alignment:
Q  220 aaggggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaat 290  Q
    ||||||| |||||||||||||||  |||||||| |||||||||| |||||||||| |||||||||||||||    
T  35685001 aaggggttatagtcactttggtccctgaatgtgcaatgagtagttacaatagtccttcaatgtatcaaaat 35684931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 24284571 - 24284484
Alignment:
Q  25 gttgtctgatgtatccactttgtttaccttgatcatcttcttagttgtcagaaaatggtaattcacatcaatgtgttttgtcctctca 112  Q
    |||||||| ||||  ||||||||||||||||||| |||||| |||| |||||||||||||  | |||| ||||||||||||| |||||    
T  24284571 gttgtctgttgtactcactttgtttaccttgatcctcttctcagttatcagaaaatggtacctgacattaatgtgttttgtcttctca 24284484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 281
Target Start/End: Complemental strand, 34177599 - 34177536
Alignment:
Q  218 aaaaggggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatg 281  Q
    ||||||||||||||||| |||||||  ||||||||||||||||||  |||||||||| ||||||    
T  34177599 aaaaggggtaatagtcattttggtccctgaatgtgtaatgagtagctacaatagtccttcaatg 34177536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 45392282 - 45392351
Alignment:
Q  220 aaggggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaa 289  Q
    ||||||||||||||| |||| |   ||||||||||||||||||| | |||||||| ||||||||||||||    
T  45392282 aaggggtaatagtcattttgattcctgaatgtgtaatgagtagtcaaaatagtccctcaatgtatcaaaa 45392351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 27901009 - 27900946
Alignment:
Q  226 taatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaa 289  Q
    ||||||||| |||| || |||||||||||||||||||| | |||||||| ||||||||| ||||    
T  27901009 taatagtcaatttgatccttgaatgtgtaatgagtagtcagaatagtccttcaatgtataaaaa 27900946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 45679510 - 45679569
Alignment:
Q  232 tcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    |||||||||||| ||||||||||| ||||||| |||||| |||||||| |||| ||||||    
T  45679510 tcactttggtctctgaatgtgtaacgagtagtcacaataatccatcaacgtattaaaatt 45679569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 291
Target Start/End: Original strand, 19464222 - 19464280
Alignment:
Q  233 cactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    |||||||||| || |||||||||  |||||| |||||||||| ||||||||||||||||    
T  19464222 cactttggtccttaaatgtgtaacaagtagtcacaatagtccttcaatgtatcaaaatt 19464280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 290
Target Start/End: Original strand, 26515039 - 26515104
Alignment:
Q  225 gtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaat 290  Q
    |||||||||||||||||| ||| |||||||||||||||| | ||| |||| | ||||||| |||||    
T  26515039 gtaatagtcactttggtccttggatgtgtaatgagtagtcataatcgtcctttaatgtattaaaat 26515104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 6728108 - 6728036
Alignment:
Q  220 aaggggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaattc 292  Q
    ||||||| ||||||| ||| |||  ||||||||||| || |||| |||||||||| |||||| ||||||||||    
T  6728108 aaggggtgatagtcattttcgtccctgaatgtgtaacgaatagtcacaatagtccttcaatgaatcaaaattc 6728036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 31134836 - 31134764
Alignment:
Q  220 aaggggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaattc 292  Q
    ||||||||||||||| |||||||  ||||||||||| ||||||| || |||||||   ||||||| |||||||    
T  31134836 aaggggtaatagtcattttggtccctgaatgtgtaacgagtagtcacgatagtcccaaaatgtataaaaattc 31134764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 292
Target Start/End: Original strand, 36144785 - 36144851
Alignment:
Q  226 taatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaattc 292  Q
    ||||||||| ||||||| |||||| ||||||||||| | |||||| ||   ||||||||||||||||    
T  36144785 taatagtcattttggtccttgaatatgtaatgagtaatcacaatactctcccaatgtatcaaaattc 36144851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 32669783 - 32669832
Alignment:
Q  224 ggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtc 273  Q
    ||||||||||| |||||||  ||||||||||| ||||||| |||||||||    
T  32669783 ggtaatagtcattttggtccatgaatgtgtaacgagtagtcacaatagtc 32669832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 34826801 - 34826862
Alignment:
Q  230 agtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    ||||||||||||||  |||| |||||||  || | |||||||||| ||||||||||||||||    
T  34826801 agtcactttggtctccgaatatgtaatggttaatcacaatagtccttcaatgtatcaaaatt 34826862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 291
Target Start/End: Original strand, 27900620 - 27900684
Alignment:
Q  227 aatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    |||||||||||||||| |||||| | ||| || |||| |||||||||  | ||||||||||||||    
T  27900620 aatagtcactttggtccttgaatatataaagaatagttacaatagtctcttaatgtatcaaaatt 27900684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 218 - 291
Target Start/End: Original strand, 12034374 - 12034447
Alignment:
Q  218 aaaaggggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    ||||||||||||||||| |||||||  ||||||| ||| ||||||| |||||||||| ||||||||||||||||    
T  12034374 aaaaggggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaatt 12034447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 46804755 - 46804820
Alignment:
Q  226 taatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    ||||||||||| |||||||||||| ||||| ||| |||||||||||||| ||||||||||||||||    
T  46804755 taatagtcactatggtctttgaatatgtaacgagcagtgacaatagtccctcaatgtatcaaaatt 46804820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 220 - 304
Target Start/End: Complemental strand, 31903597 - 31903511
Alignment:
Q  220 aaggggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaattc--aaatagtctctg 304  Q
    |||||||||| |||| |||||||| ||||||||||| || |||| |||||||||| |||| ||||||||||||  ||||||||||||    
T  31903597 aaggggtaatggtcattttggtctctgaatgtgtaacgaatagttacaatagtccctcaacgtatcaaaattccaaaatagtctctg 31903511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 291
Target Start/End: Original strand, 4161619 - 4161687
Alignment:
Q  223 gggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    |||||||||||||||| |||    ||||||||||||||||| |||||||||| ||||||||||||||||    
T  4161619 gggtaatagtcactttcgtccccaaatgtgtaatgagtagtcacaatagtccttcaatgtatcaaaatt 4161687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 291
Target Start/End: Complemental strand, 8171071 - 8171002
Alignment:
Q  222 ggggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    ||||||| |||||||||||||  || |||||||||||||||| | |||||||| ||||||||| ||||||    
T  8171071 ggggtaacagtcactttggtccctggatgtgtaatgagtagtcataatagtccctcaatgtataaaaatt 8171002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 291
Target Start/End: Original strand, 17381276 - 17381349
Alignment:
Q  218 aaaaggggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    ||||||||||||||||| ||||||   ||||||||||   |||||| |||||||||| ||||||||||||||||    
T  17381276 aaaaggggtaatagtcattttggttcctgaatgtgtagcaagtagtcacaatagtccttcaatgtatcaaaatt 17381349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 291
Target Start/End: Complemental strand, 11840146 - 11840075
Alignment:
Q  220 aaggggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    ||||||||||||||| |||||||  |||||| |||| |||||||  |||||| || ||||||||||||||||    
T  11840146 aaggggtaatagtcattttggtccctgaatgcgtaaggagtagtcgcaataggccctcaatgtatcaaaatt 11840075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 292
Target Start/End: Complemental strand, 17381653 - 17381590
Alignment:
Q  229 tagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaattc 292  Q
    ||||||||||||||  |||||| ||||  |||||| |||||||||| |||||||||||||||||    
T  17381653 tagtcactttggtccctgaatgagtaacaagtagtcacaatagtccctcaatgtatcaaaattc 17381590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 29223519 - 29223454
Alignment:
Q  226 taatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    ||||| |||||||||| ||||| ||  ||||||||||| |||||||| ||||||| ||||||||||    
T  29223519 taatattcactttggtatttgattggataatgagtagtcacaatagttcatcaatatatcaaaatt 29223454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 291
Target Start/End: Complemental strand, 30316112 - 30316043
Alignment:
Q  222 ggggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    |||||||||||||  ||||||  ||||||| |||| |||||| |||| ||||| ||||||||||||||||    
T  30316112 ggggtaatagtcatattggtccctgaatgtataataagtagtcacaaaagtccttcaatgtatcaaaatt 30316043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 291
Target Start/End: Original strand, 17753252 - 17753324
Alignment:
Q  220 aaggggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtc-catcaatgtatcaaaatt 291  Q
    ||||| ||||||||| |||| ||| ||||| ||||||||||||| |||||||||   ||||||||||||||||    
T  17753252 aagggataatagtcattttgatctctgaatatgtaatgagtagtcacaatagtcatttcaatgtatcaaaatt 17753324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 53470020 - 53470072
Alignment:
Q  1 cggcttggtaaacttatcggctgggttgtctgatgtatccactttgtttacct 53  Q
    ||||||||||||| |||| | ||||||||||| |||| |||||||||||||||    
T  53470020 cggcttggtaaacatatcagttgggttgtctgttgtacccactttgtttacct 53470072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 291
Target Start/End: Original strand, 11839763 - 11839833
Alignment:
Q  221 aggggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    ||||||||||| || |||||||| ||||| ||||| ||||||  |||||||||| ||||| |||| |||||    
T  11839763 aggggtaatagccattttggtctatgaatttgtaacgagtagccacaatagtccctcaatatatcgaaatt 11839833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 29223115 - 29223180
Alignment:
Q  226 taatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    ||||||||||||||||  || || |||||||||||||| |||||| | | ||||||||| ||||||    
T  29223115 taatagtcactttggtgcttaaacgtgtaatgagtagtcacaataattcttcaatgtataaaaatt 29223180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 291
Target Start/End: Complemental strand, 32934254 - 32934181
Alignment:
Q  218 aaaaggggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    ||||||||||||| ||| |||||||  ||||||||||| ||||    | |||||||| ||||||||||||||||    
T  32934254 aaaaggggtaataatcattttggtccctgaatgtgtaaggagtgaccataatagtccctcaatgtatcaaaatt 32934181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 255
Target Start/End: Complemental strand, 3892551 - 3892515
Alignment:
Q  219 aaaggggtaatagtcactttggtctttgaatgtgtaa 255  Q
    |||| |||||||| |||||||||||||||||||||||    
T  3892551 aaagaggtaatagacactttggtctttgaatgtgtaa 3892515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 24806837 - 24806777
Alignment:
Q  224 ggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtat 284  Q
    ||||||||||| |||||| | |||||| ||||| |||||| |||||||||| | |||||||    
T  24806837 ggtaatagtcattttggtatctgaatgcgtaataagtagttacaatagtcccttaatgtat 24806777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 290
Target Start/End: Complemental strand, 18354860 - 18354790
Alignment:
Q  220 aaggggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaat 290  Q
    ||||| ||| ||| |||||||||| ||||| ||||||||||||| |  ||||||| |||||||||||||||    
T  18354860 aagggataacagttactttggtctctgaatatgtaatgagtagttattatagtccttcaatgtatcaaaat 18354790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 291
Target Start/End: Original strand, 7792013 - 7792077
Alignment:
Q  227 aatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    |||||||| |||| ||| |||||||||||   || ||||||||||||| ||||||||||||||||    
T  7792013 aatagtcattttgatctctgaatgtgtaagatgtcgtgacaatagtccctcaatgtatcaaaatt 7792077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 285
Target Start/End: Original strand, 31141917 - 31141976
Alignment:
Q  226 taatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatc 285  Q
    ||||||| | |||| |||||||||||||   ||||||| |||||||||||||||||||||    
T  31141917 taatagttattttgatctttgaatgtgtgccgagtagtcacaatagtccatcaatgtatc 31141976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 292
Target Start/End: Original strand, 6524836 - 6524910
Alignment:
Q  218 aaaaggggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaattc 292  Q
    |||| ||||||||| || |||||||  |||||||||||| |||||| | |||||||  ||||||||| |||||||    
T  6524836 aaaaagggtaatagccattttggtccatgaatgtgtaataagtagtcataatagtctctcaatgtattaaaattc 6524910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 291
Target Start/End: Original strand, 34937444 - 34937494
Alignment:
Q  241 tctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    ||||||||||||||| ||||||| |||||||| | |||||||||| |||||    
T  34937444 tctttgaatgtgtaacgagtagtcacaatagttcttcaatgtatccaaatt 34937494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 291
Target Start/End: Complemental strand, 10067830 - 10067762
Alignment:
Q  223 gggtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    |||||||||||| ||| ||||||||||||||||  ||||   |||||||||  |||||||||| |||||    
T  10067830 gggtaatagtcattttagtctttgaatgtgtaacaagtaaccacaatagtctctcaatgtatcgaaatt 10067762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 6196 - 6261
Alignment:
Q  226 taatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaatt 291  Q
    ||||||||| || ||||| | |||||| || |||||||  ||||||||||||||||||||||||||    
T  6196 taatagtcatttcggtctctcaatgtgcaacgagtagtcccaatagtccatcaatgtatcaaaatt 6261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 21964 - 21894
Alignment:
Q  225 gtaatagtcactttggtctttgaatgtgtaatgagtagtgacaatagtccatcaatgtatcaaaattcaaa 295  Q
    |||| ||||| |||||||| ||||||| |||  |||||| |||||||||  ||||| ||||||||||||||    
T  21964 gtaaaagtcattttggtctctgaatgtttaagaagtagtcacaatagtctttcaatatatcaaaattcaaa 21894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University