View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5217_low_5 (Length: 293)
Name: NF5217_low_5
Description: NF5217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5217_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 6 - 237
Target Start/End: Complemental strand, 34059412 - 34059181
Alignment:
| Q |
6 |
agtgatatgaacaagaggatggatgtgtcttttaatgcttcatatgtgactcaaagttttgaacaaaatggtgcaattatgaagatgcttagttttctaa |
105 |
Q |
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| T |
34059412 |
agtgataagaacaagaggatggatgtgtcttttaatgcttcatatgtgactcaaagttttgaacaaaatggtgcaattatgaagatgcttagttttctaa |
34059313 |
T |
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| Q |
106 |
cgactttctgaaaattttaatttaagaaactaaaaagtaaactaatgacaaatcataaagtgcacatacaataagagaaaatttcacctaaagaaaataa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34059312 |
cgactttctgaaaattttaatttaagaaactaaaaagtaaactaatgacaaatcataaagtgcacatacaataagagaaaatttcacctaaagaaaataa |
34059213 |
T |
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| Q |
206 |
aaacataaatagaatgtgtagtgaatatgaga |
237 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
34059212 |
aaacataaatagaatgtgtagtgaatatgaga |
34059181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 24235826 - 24235886
Alignment:
| Q |
193 |
ctaaagaaaataaaaaca-taaatagaatgtgtagtgaatatgagaaaatttcacctttag |
252 |
Q |
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||||||||||||| || | |||| | |||||||||||||| |||||||||||||||||||| |
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| T |
24235826 |
ctaaagaaaataagaagaataaacaaaatgtgtagtgaatgtgagaaaatttcacctttag |
24235886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 7818868 - 7818811
Alignment:
| Q |
193 |
ctaaagaaaataaaaacataaatagaatgtgtagtgaatatgagaaaatttcacctttag |
252 |
Q |
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|||||||||||||||| |||| | |||||||||||||| ||| |||||||||||||||| |
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| T |
7818868 |
ctaaagaaaataaaaa--taaacaaaatgtgtagtgaatgtgataaaatttcacctttag |
7818811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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