View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5218-Insertion-1 (Length: 1170)

Name: NF5218-Insertion-1
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5218-Insertion-1
NF5218-Insertion-1
[»] chr5 (1 HSPs)
chr5 (8-981)||(2828000-2828979)
[»] chr2 (5 HSPs)
chr2 (781-933)||(2336619-2336771)
chr2 (868-933)||(13154479-13154544)
chr2 (830-933)||(31385732-31385835)
chr2 (826-899)||(2323645-2323717)
chr2 (860-925)||(7784624-7784689)
[»] chr6 (2 HSPs)
chr6 (783-933)||(34661622-34661772)
chr6 (853-897)||(6071163-6071207)
[»] chr8 (3 HSPs)
chr8 (826-925)||(40991756-40991855)
chr8 (869-933)||(4715271-4715335)
chr8 (863-897)||(4154759-4154793)
[»] chr7 (1 HSPs)
chr7 (845-902)||(42282093-42282150)
[»] chr4 (2 HSPs)
chr4 (89-141)||(56425076-56425128)
chr4 (873-926)||(7147742-7147795)
[»] scaffold0807 (1 HSPs)
scaffold0807 (865-911)||(3095-3141)
[»] chr1 (1 HSPs)
chr1 (829-886)||(34649480-34649537)


Alignment Details
Target: chr5 (Bit Score: 872; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 872; E-Value: 0
Query Start/End: Original strand, 8 - 981
Target Start/End: Complemental strand, 2828979 - 2828000
Alignment:
Q  8 gtatagctgtagcaggtgcactttgcaacagtggaacacaatttataacgaataaactaatgtttaaactggtaaaatatgttatttttacgcaaaagtg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2828979 gtatagctgtagcaggtgcactttgcaacagtggaacacaatttataacgaataaactaatgtttaaaatggtaaaatatgttatttttacgcaaaagtg 2828880  T
Q  108 gttgtttagaggatatatagcaatgcagaattcaaagaattaaacatttgtgtttagatgtattcaagagatgcataaaagttcttaataagttagtact 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2828879 gttgtttagaggatatatagcaatgcagaattcaaagaattaaacatttgtgtttagatgtattcaagagatgcataaaagttcttaataagttagtacc 2828780  T
Q  208 tccaaatatccaatactttgcattacatgtaaaagcagaatccatcagaaacatgttgataattgcataagcctttggtttaaccaactacgaatatgtt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2828779 tccaaatatccaatactttgcattacatgtaaaagcagaatccatcagaaacatgttgataattgcataagcctttggtttaaccaactacgaatatgtt 2828680  T
Q  308 atatttcaacaaagaaagaagagagagttggagaaagcacacaaaaacttgtctaatggttcaccctcaacttttagactacatctattctctacctatg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2828679 atatttcaacaaagaaagaagagagagttggagaaagcacacaaaaacttgtctaatggttcaccctcaacttttagactacatctattctctacctatg 2828580  T
Q  408 gagcacaagtgctgacacggacacgatacttagatcaacatgtcataccgatgataattttgaaaaagattaattagtcacatgcgtcattgtcgtgtcg 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2828579 gagcacaagtgctgacacggacacgatacttagatcaacatgtcataccgatgataattttgaaaaagattaattagtcacatgcgtcattgtcgtgtcg 2828480  T
Q  508 tatcatatcatacgccaaacatgtctacggtcacaagtgtttgctaaatagttcccaagccacggtatgatttcccactatatcaatcatcaaatacata 607  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2828479 tatcatatcatacgccaaatatgtctacggtcacaagtgtttgctaaatagttcccaacccacggtatgatttcccactatatcaatcatcaaatacata 2828380  T
Q  608 tagtctttgcataagcctcctccatgaatgcatgttcatccaaagatatgggtttgaa-----nnnnnnnnnnnnncttctgataatccttcggtcaaag 702  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||||||||||||||||    
T  2828379 tagtctttgcataagcctcctccatgaatgcatgttcatccaaagatatgggtttgaatttttttattttttttttcttctgataatccttcggtcaaag 2828280  T
Q  703 aaagaggatcctgataatctagagttcggtcgctaggtaagtaaagtgttggatcacagtgagtctaagagatctcctacattgggtcaagagcaacaat 802  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2828279 aaagaggatcctgataatctagagttcggtcgctaggtaagtaaagtgttggatcacagtgagtctaagagatctcctacattgggtcaagagcaacaat 2828180  T
Q  803 acgagtgagttagtcatcaaactttaacccaaaaccttaaggcattagacttatggattatttcacttataaagtgtacaacctccacttttctaaatca 902  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2828179 acgagtgagttagtcatcaaactttaacccaaaaccttaaggcattagacttatggattatttcacttataaagtgtacaacctccacttttctaaatca 2828080  T
Q  903 tgtgacacttctaactcacacttgatacac-acaaattcattatgttctccctc-agtggaagcttttcat-cacatacact 981  Q
    ||||||||||||||||  |||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  2828079 tgtgacacttctaact--cacttgatacacaacaaattcattatgttctccctcaagtggaagcttttcatccacatacact 2828000  T

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Target: chr2 (Bit Score: 45; Significance: 5e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 781 - 933
Target Start/End: Complemental strand, 2336771 - 2336619
Alignment:
Q  781 acattgggtcaagagcaacaatacgagtgagttagtcatcaaactttaacccaaaaccttaaggcattagacttatggattatttcacttataaagtgta 880  Q
    |||||||||  |||||||| | || |||||||| | || || |  ||||||||||| |||||||||||  | |||||| |  | |||||||||||||||     
T  2336771 acattgggttcagagcaaccacacaagtgagttggacaccacatcttaacccaaaatcttaaggcattgaatttatgggtcctctcacttataaagtgtt 2336672  T
Q  881 caacctccacttttctaaatcatgtgacacttctaactcacacttgatacaca 933  Q
    ||||||||||||||||||   || ||| ||||||||||||||| || ||||||    
T  2336671 caacctccacttttctaagcaatttgaaacttctaactcacacatgctacaca 2336619  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 868 - 933
Target Start/End: Original strand, 13154479 - 13154544
Alignment:
Q  868 cttataaagtgtacaacctccacttttctaaatcatgtgacacttctaactcacacttgatacaca 933  Q
    |||||||||||| ||||||||||||||||||   |||||| |||||||||||| ||||| ||||||    
T  13154479 cttataaagtgttcaacctccacttttctaagcaatgtgagacttctaactcatacttgctacaca 13154544  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 830 - 933
Target Start/End: Complemental strand, 31385835 - 31385732
Alignment:
Q  830 cccaaaaccttaaggcattagacttatggattatttcacttataaagtgtacaacctccacttttctaaatcatgtgacacttctaactcacacttgata 929  Q
    ||||||||||||||||| | |  |||||| |  |||||||||||| |||  ||||||||| ||||||||   |||| | |||||||||||||||||| ||    
T  31385835 cccaaaaccttaaggcaatgggtttatgggtcctttcacttataaggtgctcaacctccatttttctaaccgatgtcagacttctaactcacacttgcta 31385736  T
Q  930 caca 933  Q
    ||||    
T  31385735 caca 31385732  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 826 - 899
Target Start/End: Complemental strand, 2323717 - 2323645
Alignment:
Q  826 ttaacccaaaaccttaaggcattagacttatggattatttcacttataaagtgtacaacctccacttttctaaa 899  Q
    |||||| |||||||||||||||| |  ||||||||  | ||||||||||||||| ||||||||| |||||||||    
T  2323717 ttaacctaaaaccttaaggcattggt-ttatggatcctctcacttataaagtgtccaacctccatttttctaaa 2323645  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 860 - 925
Target Start/End: Complemental strand, 7784689 - 7784624
Alignment:
Q  860 ttatttcacttataaagtgtacaacctccacttttctaaatcatgtgacacttctaactcacactt 925  Q
    |||| ||| ||||||| ||| ||||||||| || ||||| | ||||||||||||||||||| ||||    
T  7784689 ttatctcagttataaaatgttcaacctccatttatctaactgatgtgacacttctaactcatactt 7784624  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 783 - 933
Target Start/End: Original strand, 34661622 - 34661772
Alignment:
Q  783 attgggtcaagagcaacaatacgagtgagttagtcatcaaactttaacccaaaaccttaaggcattagacttatggattatttcacttataaagtgtaca 882  Q
    |||||||  |||||||| |||| ||||||  || || || ||||||||  ||||||||||| || || |  ||||| || | | ||||||||||||  ||    
T  34661622 attgggttcagagcaaccatacaagtgagacagccaccacactttaacgtaaaaccttaagacaatatatgtatgggttctcttacttataaagtgatca 34661721  T
Q  883 acctccacttttctaaatcatgtgacacttctaactcacacttgatacaca 933  Q
    |||||||||||||||| | |||||| | |||||||||||||||| ||||||    
T  34661722 acctccacttttctaagtaatgtgagatttctaactcacacttgctacaca 34661772  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 853 - 897
Target Start/End: Complemental strand, 6071207 - 6071163
Alignment:
Q  853 ttatggattatttcacttataaagtgtacaacctccacttttcta 897  Q
    |||||||| || ||||||||||||||| |||||||||||||||||    
T  6071207 ttatggatcatctcacttataaagtgttcaacctccacttttcta 6071163  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 826 - 925
Target Start/End: Complemental strand, 40991855 - 40991756
Alignment:
Q  826 ttaacccaaaaccttaaggcattagacttatggattatttcacttataaagtgtacaacctccacttttctaaatcatgtgacacttctaactcacactt 925  Q
    ||||||||||||||| ||||||| |  |||||| |  | |||||||| |||||| ||||||||||||||||||   |||||  |||||||||||||||||    
T  40991855 ttaacccaaaaccttgaggcattgggtttatgggtcctctcacttatgaagtgttcaacctccacttttctaagcaatgtgggacttctaactcacactt 40991756  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 869 - 933
Target Start/End: Complemental strand, 4715335 - 4715271
Alignment:
Q  869 ttataaagtgtacaacctccacttttctaaatcatgtgacacttctaactcacacttgatacaca 933  Q
    ||||||||||| |||||||||||||||| ||  |||  | |||||||||||||||||| ||||||    
T  4715335 ttataaagtgttcaacctccacttttcttaacaatgcaagacttctaactcacacttgttacaca 4715271  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 863 - 897
Target Start/End: Original strand, 4154759 - 4154793
Alignment:
Q  863 tttcacttataaagtgtacaacctccacttttcta 897  Q
    ||||||||||||||||| |||||||||||||||||    
T  4154759 tttcacttataaagtgttcaacctccacttttcta 4154793  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 845 - 902
Target Start/End: Original strand, 42282093 - 42282150
Alignment:
Q  845 cattagacttatggattatttcacttataaagtgtacaacctccacttttctaaatca 902  Q
    |||||| ||||||| |  ||||||||||||||||| ||||||||||||||||||||||    
T  42282093 cattaggcttatgggtcctttcacttataaagtgttcaacctccacttttctaaatca 42282150  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 56425128 - 56425076
Alignment:
Q  89 ttatttttacgcaaaagtggttgtttagaggatatatagcaatgcagaattca 141  Q
    ||||||||| ||||||||| ||||||| |||||||||||||||||||| ||||    
T  56425128 ttatttttatgcaaaagtgattgtttaaaggatatatagcaatgcagagttca 56425076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 873 - 926
Target Start/End: Original strand, 7147742 - 7147795
Alignment:
Q  873 aaagtgtacaacctccacttttctaaatcatgtgacacttctaactcacacttg 926  Q
    ||||||| ||||||||||||||||||   |||||| ||||||||||||||||||    
T  7147742 aaagtgttcaacctccacttttctaagcaatgtgagacttctaactcacacttg 7147795  T

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Target: scaffold0807 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 865 - 911
Target Start/End: Complemental strand, 3141 - 3095
Alignment:
Q  865 tcacttataaagtgtacaacctccacttttctaaatcatgtgacact 911  Q
    |||||||||||||||| |||||||||||||||||||  |||||||||    
T  3141 tcacttataaagtgtataacctccacttttctaaatattgtgacact 3095  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 829 - 886
Target Start/End: Complemental strand, 34649537 - 34649480
Alignment:
Q  829 acccaaaaccttaaggcattagacttatggattatttcacttataaagtgtacaacct 886  Q
    ||||||||||||||||||||||  |||||| || || ||||||||| |||| ||||||    
T  34649537 acccaaaaccttaaggcattaggtttatgggttcttgcacttataaggtgttcaacct 34649480  T

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