View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5218-Insertion-10 (Length: 506)

Name: NF5218-Insertion-10
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5218-Insertion-10
NF5218-Insertion-10
[»] chr3 (24 HSPs)
chr3 (8-298)||(22368067-22368357)
chr3 (8-298)||(22468088-22468393)
chr3 (8-298)||(22630578-22630884)
chr3 (8-294)||(22358142-22358443)
chr3 (8-298)||(22442879-22443184)
chr3 (9-282)||(22353952-22354242)
chr3 (8-295)||(22635643-22635945)
chr3 (8-280)||(22431313-22431578)
chr3 (194-298)||(22632206-22632310)
chr3 (128-295)||(22436909-22437076)
chr3 (8-280)||(22458629-22458916)
chr3 (8-280)||(22481610-22481897)
chr3 (452-499)||(22437914-22437961)
chr3 (402-494)||(22439904-22439998)
chr3 (294-347)||(22359155-22359208)
chr3 (294-347)||(22369057-22369110)
chr3 (456-492)||(22449356-22449392)
chr3 (11-67)||(30989448-30989504)
chr3 (162-261)||(21945682-21945781)
chr3 (215-294)||(22615621-22615700)
chr3 (203-261)||(2818650-2818708)
chr3 (162-296)||(21937176-21937310)
chr3 (203-264)||(2797451-2797512)
chr3 (11-92)||(22115327-22115408)
[»] chr4 (1 HSPs)
chr4 (8-72)||(29610707-29610771)
[»] chr8 (1 HSPs)
chr8 (213-261)||(27294606-27294654)
[»] chr1 (1 HSPs)
chr1 (164-264)||(34980217-34980317)


Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 298
Target Start/End: Original strand, 22368067 - 22368357
Alignment:
Q  8 catacatcatcaaacactacaacatacctttttccttgcaagtagtttctcacttcatcaactaataactttccatccatttgatgaagactttgaggag 107  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22368067 catacatcatcaaacactacaacgtacctttttccttgcaagtagtttctcacttcatcaactaataactttccatccatttgatgaagactttgaggag 22368166  T
Q  108 gacctttcccttgttgcagtatgtccttcagcaatttttctttattatatggtcgagacaccgtgatccatacatgacagtcaaaatgtttaacgacctt 207  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||| ||||| ||||||||||||||    
T  22368167 gacatttcccttgttgcagtatgtccttcagcaatttttctttattatatggtcgagaaaccgtgatccataaacgacaatcaaagtgtttaacgacctt 22368266  T
Q  208 ttggttgtcaaaaactttcttggcaagagtgatttttcccagtcctcccattccaacaatggagacaactgtgcgctgtgctcttccctct 298  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  22368267 ttggttgtcaaaaactttcttggctagagtggtttttcccagtcctcccattccaacaatggagacaactgtgcggtgtgctcttccctct 22368357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 8 - 298
Target Start/End: Original strand, 22468088 - 22468393
Alignment:
Q  8 catacatcatcaaacactacaacatacctttttccttgcaagtagtttctcacttcatcaactaataactttccatccatttgatgaagactttgaggag 107  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||| ||||| ||||| |||||||    
T  22468088 catacatcatcaaacactataacatacctttttccttgcaagtagtttctcacttcatcaactaatggctttcgatccatctgatggagactctgaggag 22468187  T
Q  108 gacctttcccttgttg---------------cagtatgtccttcagcaatttttctttattatatggtcgagacaccgtgatccatacatgacagtcaaa 192  Q
    || ||| |||||||||               ||  || ||| ||| |||||||||| |||| |||||||||||||||||||||||||||||||| |||||    
T  22468188 gatcttccccttgttgtttgtaaatatcgagcaaaatttccctcaacaatttttctatattgtatggtcgagacaccgtgatccatacatgacaatcaaa 22468287  T
Q  193 atgtttaacgaccttttggttgtcaaaaactttcttggcaagagtgatttttcccagtcctcccattccaacaatggagacaactgtgcgctgtgctctt 292  Q
    ||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||| ||||||||||| ||||||| |||||||    
T  22468288 atgtttaacgaccttttggttgtcaaaaactttcttggctatagtggtttttcccagtcctcccattccaactatggagacaacggtgcgctctgctctt 22468387  T
Q  293 ccctct 298  Q
    ||||||    
T  22468388 ccctct 22468393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 8 - 298
Target Start/End: Original strand, 22630578 - 22630884
Alignment:
Q  8 catacatcatcaaacactacaa-catacctttttccttgcaagtagtttctcacttcatcaactaataactttccatccatttgatgaagactttgagga 106  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||| ||||||||||||    
T  22630578 catacatcatcaaacactacaaacgtacctttttccttgcaagtagtttctcacttcatcaactaatggctttcgatccatttgatggagactttgagga 22630677  T
Q  107 ggacctttcccttgttg---------------cagtatgtccttcagcaatttttctttattatatggtcgagacaccgtgatccatacatgacagtcaa 191  Q
    ||| |||||||||||||               ||  |||||| ||| |||| ||||| |||| |||||||||||||||||||||||| ||||||| ||||    
T  22630678 ggatctttcccttgttgtttgtaaatctcgagcaaaatgtccctcaacaatgtttctatattgtatggtcgagacaccgtgatccattcatgacaatcaa 22630777  T
Q  192 aatgtttaacgaccttttggttgtcaaaaactttcttggcaagagtgatttttcccagtcctcccattccaacaatggagacaactgtgcgctgtgctct 291  Q
    | ||||||||||||||| |||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||| | ||||||    
T  22630778 agtgtttaacgacctttcggttgtcaaaaattttcttggcaagagtggttttccccagtcctcccattccaacaatagagacaactgtgcgttctgctct 22630877  T
Q  292 tccctct 298  Q
    |||||||    
T  22630878 tccctct 22630884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 8 - 294
Target Start/End: Original strand, 22358142 - 22358443
Alignment:
Q  8 catacatcatcaaacactacaacatacctttttccttgcaagtagtttctcacttcatcaactaataactttccatccatttgatgaagactttgaggag 107  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| || |||||||||| | ||||| |||||||    
T  22358142 catacatcatcaaacactacaacataccttttttcttgcaagtagtttctcacttcatcaactaatgactgtcgatccatttgacggagactctgaggag 22358241  T
Q  108 gacctttcccttgttg---------------cagtatgtccttcagcaatttttctttattatatggtcgagacaccgtgatccatacatgacagtcaaa 192  Q
    || |||||| ||||||               ||  |||||| ||| || ||||||| |||| ||||||||||||||||| ||||||||| |||  |||||    
T  22358242 gaactttcctttgttgtttgtaaaactcgagcataatgtccctcaacactttttctgtattgtatggtcgagacaccgtaatccatacacgacgatcaaa 22358341  T
Q  193 atgtttaacgaccttttggttgtcaaaaactttcttggcaagagtgatttttcccagtcctcccattccaacaatggagacaactgtgcgctgtgctctt 292  Q
     ||||| ||||||||| ||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||| ||| || | |||||||    
T  22358342 gtgttttacgacctttgggttgtcaaaaactttcttcgctagagtggtttttcccagtcctcccattccaacaatggagacaattgtccggtctgctctt 22358441  T
Q  293 cc 294  Q
    ||    
T  22358442 cc 22358443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 8 - 298
Target Start/End: Original strand, 22442879 - 22443184
Alignment:
Q  8 catacatcatcaaacactacaacatacctttttccttgcaagtagtttctcacttcatcaactaataactttccatccatttgatgaagactttgaggag 107  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| || |||||||||||| ||||| |||||||    
T  22442879 catacatcatcaaacactacaacataccttttttcttgcaagtagtttctcacttcatcaactaatgactgtcgatccatttgatggagactctgaggag 22442978  T
Q  108 gacctttcccttgtt---------------gcagtatgtccttcagcaatttttctttattatatggtcgagacaccgtgatccatacatgacagtcaaa 192  Q
    || |||||| |||||               |||  |||||| ||| || ||||||  ||||  ||| | |||||||| ||||||||| | ||||||||||    
T  22442979 gaactttcctttgttgtttgtaaaactcgagcataatgtccctcaacactttttcaatattgaatgattgagacaccatgatccataaaagacagtcaaa 22443078  T
Q  193 atgtttaacgaccttttggttgtcaaaaactttcttggcaagagtgatttttcccagtcctcccattccaacaatggagacaactgtgcgctgtgctctt 292  Q
     || ||||| ||||||||||||||||||| ||   |||| |||||| ||||||||| ||||||||||||||||||||||||||||||||| | | |||||    
T  22443079 gtgcttaactaccttttggttgtcaaaaatttgtctggctagagtggtttttcccaatcctcccattccaacaatggagacaactgtgcggtcttctctt 22443178  T
Q  293 ccctct 298  Q
    ||||||    
T  22443179 ccctct 22443184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 22353952 - 22354242
Alignment:
Q  9 atacatcatcaaacactacaacatacctttttccttgcaagtagtttctcacttcatcaactaataactttccatccatttgatgaagactttgaggagg 108  Q
    |||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||  ||||| |||||||||||| ||||| ||||||||    
T  22353952 atacattatcaaacactacaacgtacctttttccttgcaagttgtttctcacttcatcaactaatggctttcgatccatttgatggagactctgaggagg 22354051  T
Q  109 acctttcccttgttg---------------cagtatgtccttcagcaatttttctttattatatggtcgagacaccgtgatccata--catgacagtcaa 191  Q
    | |||||| | ||||               ||  |||||| ||| || ||||||| | || ||||||||||| |||||||||||||  ||| ||| ||||    
T  22354052 atctttccttcgttgtttgtaaatctccagcaaaatgtccctcaacactttttctatgttgtatggtcgagataccgtgatccatatacataacaatcaa 22354151  T
Q  192 aatgtttaacgaccttttggttgtcaaaaactttcttggcaagagtgatttttcccagtcctcccattccaacaatggagacaactgtgcg 282  Q
    | |  ||||| |||||||||||||||||||||||  |||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22354152 agttcttaactaccttttggttgtcaaaaacttttctggctagagtggtttttcccagtcctcccattccaacaatggagacaactgtgcg 22354242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 8 - 295
Target Start/End: Original strand, 22635643 - 22635945
Alignment:
Q  8 catacatcatcaaacactacaacatacctttttccttgcaagtagtttctcacttcatcaactaataactttccatccatttgatgaagactttgaggag 107  Q
    ||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||| |||||| |||||||||||| ||||| | |||||    
T  22635643 catacatcatcaaacactaaaacatacctttttccttgaaagtggtttctcacttcatcaactaatgactttcgatccatttgatggagactctcaggag 22635742  T
Q  108 gacctttcccttgtt---------------gcagtatgtccttcagcaatttttctttattatatggtcgagacaccgtgatccatacatgacagtcaaa 192  Q
    || ||| ||||||||               |||  |||||   || || ||||||| |||| ||||||||||||||||| ||||||||| |||| |||||    
T  22635743 gaacttccccttgttgtttgtaaaactcgagcataatgtctcgcaacactttttctgtattgtatggtcgagacaccgtaatccatacacgacaatcaaa 22635842  T
Q  193 atgtttaacgaccttttggttgtcaaaaactttcttggcaagagtgatttttcccagtcctcccattccaacaatggagacaactgtgcgctgtgctctt 292  Q
     | ||| ||||||||| ||||||||||||||||||| || |||||| |||||||  |||||||||||||||  |||||||||| ||| || | |||||||    
T  22635843 gtattttacgacctttgggttgtcaaaaactttcttcgctagagtggtttttccttgtcctcccattccaaagatggagacaattgtccggtctgctctt 22635942  T
Q  293 ccc 295  Q
    |||    
T  22635943 ccc 22635945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 8 - 280
Target Start/End: Original strand, 22431313 - 22431578
Alignment:
Q  8 catacatcatcaaacactacaacatacctttttccttgcaagtagtttctcacttcatcaactaataactttccatccatttgatgaagactttgaggag 107  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||| |||||| |||| |||||||||| || ||      |||     
T  22431313 catacatcatcaaacactacaacgtacctttttccttgcaagtagtttctcagtttatcaagtaataagtttcgatccatttgaggagga------ggat 22431406  T
Q  108 -gacctttcccttgttgcagtatgtccttcagcaatttttctttattatatggtcgagacaccgtgatccatacatgacagtcaaaatgtttaacgacct 206  Q
     ||| |    ||||| |||  || | || || |||||||||| ||| ||||||| ||||||| |||||||||| | |||| ||||| ||||||| ||||     
T  22431407 cgacttcaaacttgt-gcaacattttctgcaacaatttttctatatcatatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccc 22431505  T
Q  207 tttggttgtcaaaaactttcttggcaagagtgatttttcccagtcctcccattccaacaatggagacaactgtg 280  Q
    | | ||||||||||||||||||||  |||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  22431506 tgttgttgtcaaaaactttcttggttagagtggtttttcccagtcctcccattcc-acaatggagaccactgtg 22431578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 194 - 298
Target Start/End: Original strand, 22632206 - 22632310
Alignment:
Q  194 tgtttaacgaccttttggttgtcaaaaactttcttggcaagagtgatttttcccagtcctcccattccaacaatggagacaactgtgcgctgtgctcttc 293  Q
    |||||||||| |||| |||||||||||||||||||||| |||||| |||| ||||||||||||||||||| |||||||||||||||||| | ||||||||    
T  22632206 tgtttaacgatctttcggttgtcaaaaactttcttggctagagtggttttccccagtcctcccattccaataatggagacaactgtgcgatctgctcttc 22632305  T
Q  294 cctct 298  Q
    |||||    
T  22632306 cctct 22632310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 128 - 295
Target Start/End: Original strand, 22436909 - 22437076
Alignment:
Q  128 atgtccttcagcaatttttctttattatatggtcgagacaccgtgatccatacatgacagtcaaaatgtttaacgaccttttggttgtcaaaaactttct 227  Q
    |||||| ||| ||||||||||||| | |||| | ||||||| ||||||||||||||||||||||| ||||| | ||| ||   ||| |||||||||||||    
T  22436909 atgtccctcaacaatttttctttactgtatgattgagacactgtgatccatacatgacagtcaaattgttttaagactttgatgttctcaaaaactttct 22437008  T
Q  228 tggcaagagtgatttttcccagtcctcccattccaacaatggagacaactgtgcgctgtgctcttccc 295  Q
    |||| |||||  |||||||  | ||||||||||| ||||| ||||||||||  |||| | ||||||||    
T  22437009 tggccagagtagtttttccttgccctcccattcctacaatagagacaactgcacgctctactcttccc 22437076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 8 - 280
Target Start/End: Original strand, 22458629 - 22458916
Alignment:
Q  8 catacatcatcaaacactacaacatacctttttccttgcaagtagtttctcacttcatcaactaataactttccatccatttgatgaagactttgaggag 107  Q
    |||||||||||||| |||| ||||||||||||| | ||||||||||| |||||||||||||| ||| ||| || || ||||||||||| |||||| ||      
T  22458629 catacatcatcaaaaactataacataccttttttcctgcaagtagttcctcacttcatcaaccaatgactctcgattcatttgatgaatactttggggga 22458728  T
Q  108 gacctttcccttgttg---------------cagtatgtccttcagcaatttttctttattatatggtcgagacaccgtgatccatacatgacagtcaaa 192  Q
    ||  |   ||||||||               ||| |||||| |||||||   |||| |||| |||| | |||||||  |||||||||||||||| |||||    
T  22458729 gatttgctccttgttgttcgtaaaacttgtgcagcatgtccctcagcaagccttctatattgtatgattgagacactctgatccatacatgacaatcaaa 22458828  T
Q  193 atgtttaacgaccttttggttgtcaaaaactttcttggcaagagtgatttttcccagtcctcccattccaacaatggagacaactgtg 280  Q
     |||||||||| ||| | || ||||||||| ||||| ||||||||  |||||||  |||||||| |||||||||||| ||||| ||||    
T  22458829 gtgtttaacgatcttgttgtcgtcaaaaaccttctttgcaagagttgtttttccttgtcctccctttccaacaatggtgacaattgtg 22458916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 8 - 280
Target Start/End: Original strand, 22481610 - 22481897
Alignment:
Q  8 catacatcatcaaacactacaacatacctttttccttgcaagtagtttctcacttcatcaactaataactttccatccatttgatgaagactttgaggag 107  Q
    |||||||||||||| |||| ||||||||||||| | ||||||||||| |||||||||||||| ||| ||| || || ||||||||||| |||||| ||      
T  22481610 catacatcatcaaaaactataacataccttttttcctgcaagtagttcctcacttcatcaaccaatgactctcgattcatttgatgaatactttggggga 22481709  T
Q  108 gacctttcccttgttg---------------cagtatgtccttcagcaatttttctttattatatggtcgagacaccgtgatccatacatgacagtcaaa 192  Q
    ||  |   ||||||||               ||| |||||| |||||||   |||| |||| |||| | |||||||  |||||||||||||||| |||||    
T  22481710 gatttgctccttgttgttcgtaaaacttgtgcagcatgtccctcagcaagccttctatattgtatgattgagacactctgatccatacatgacaatcaaa 22481809  T
Q  193 atgtttaacgaccttttggttgtcaaaaactttcttggcaagagtgatttttcccagtcctcccattccaacaatggagacaactgtg 280  Q
     |||||||||| ||| | || ||||||||| ||||| ||||||||  |||||||  |||||||| |||||||||||| ||||| ||||    
T  22481810 gtgtttaacgatcttgttgtcgtcaaaaaccttctttgcaagagttgtttttccttgtcctccctttccaacaatggtgacaattgtg 22481897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 452 - 499
Target Start/End: Original strand, 22437914 - 22437961
Alignment:
Q  452 taaataatttagctttgaatgggcaattggctatgcaatgtgaagtgt 499  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||    
T  22437914 taaataatttagttttgaatgggcaattggctatgcaatgtgaggtgt 22437961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 402 - 494
Target Start/End: Original strand, 22439904 - 22439998
Alignment:
Q  402 attcggaatagataagatacccagctcttcagatcattcatctaactagttaaataattta-----gctttgaatgggcaattggctatgcaatgtga 494  Q
    ||||||||||||||||| ||| |||||||  |||||||||||| |||||||||||||||||     | ||||||| | ||||||||||||||||||||    
T  22439904 attcggaatagataagacacc-agctctt--gatcattcatctcactagttaaataatttaaattagttttgaatcgccaattggctatgcaatgtga 22439998  T

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Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 294 - 347
Target Start/End: Original strand, 22359155 - 22359208
Alignment:
Q  294 cctctctgtcattgttaaatattttattgagtaccttgacagcataaaaatcaa 347  Q
    ||||||| ||||||| ||||||||||||||||| |||||||||||||| |||||    
T  22359155 cctctctatcattgtcaaatattttattgagtaacttgacagcataaatatcaa 22359208  T

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Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 294 - 347
Target Start/End: Original strand, 22369057 - 22369110
Alignment:
Q  294 cctctctgtcattgttaaatattttattgagtaccttgacagcataaaaatcaa 347  Q
    ||||||| ||||||| ||||||||||||||||| |||||||||||||| |||||    
T  22369057 cctctctatcattgtcaaatattttattgagtaacttgacagcataaatatcaa 22369110  T

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Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 456 - 492
Target Start/End: Complemental strand, 22449392 - 22449356
Alignment:
Q  456 taatttagctttgaatgggcaattggctatgcaatgt 492  Q
    |||||||| ||||||||||||||||||||||||||||    
T  22449392 taatttagttttgaatgggcaattggctatgcaatgt 22449356  T

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Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 30989448 - 30989504
Alignment:
Q  11 acatcatcaaacactacaacatacctttttccttgcaagtagtttctcacttcatca 67  Q
    |||||||||||||| || ||||||||||||    |||||||||||||||||||||||    
T  30989448 acatcatcaaacacaacgacatacctttttaaccgcaagtagtttctcacttcatca 30989504  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 261
Target Start/End: Complemental strand, 21945781 - 21945682
Alignment:
Q  162 gagacaccgtgatccatacatgacagtcaaaatgtttaacgaccttttggttgtcaaaaactttcttggcaagagtgatttttcccagtcctcccattcc 261  Q
    ||||||| |||||||||||| |||| ||||| |||  || ||| |  | | ||||||||||||||||||| |||||| |||||||  | |||||||||||    
T  21945781 gagacacagtgatccatacaagacaatcaaagtgtcaaatgacatccttgctgtcaaaaactttcttggctagagtggtttttccttgccctcccattcc 21945682  T

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Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 294
Target Start/End: Original strand, 22615621 - 22615700
Alignment:
Q  215 tcaaaaactttcttggcaagagtgatttttcccagtcctcccattccaacaatggagacaactgtgcgctgtgctcttcc 294  Q
    |||||||| ||||||||||||||| |||| ||| | ||||||||||| || |  |||||||| ||||||| | |||||||    
T  22615621 tcaaaaacattcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttcc 22615700  T

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Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 261
Target Start/End: Complemental strand, 2818708 - 2818650
Alignment:
Q  203 accttttggttgtcaaaaactttcttggcaagagtgatttttcccagtcctcccattcc 261  Q
    ||||||||| |||||||||||  ||||||||||||| ||||||| || || ||||||||    
T  2818708 accttttggctgtcaaaaactagcttggcaagagtggtttttcctagaccccccattcc 2818650  T

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Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 296
Target Start/End: Complemental strand, 21937310 - 21937176
Alignment:
Q  162 gagacaccgtgatccatacatgacagtcaaaatgtttaacgaccttttggttgtcaaaaactttcttggcaagagtgatttttcccagtcctcccattcc 261  Q
    ||||||| |||||||||||| |||| ||||| |||  |||||| |  | | |||||||| ||||||| || |||||| |||||||  | |||||||||||    
T  21937310 gagacactgtgatccatacacgacaatcaaagtgtccaacgacatccttgctgtcaaaagctttcttagctagagtggtttttccttgccctcccattcc 21937211  T
Q  262 aacaatggagacaactgtgcgctgtgctcttccct 296  Q
     || |  || ||||| ||||||| ||| |||||||    
T  21937210 taccacagaaacaacagtgcgctctgcccttccct 21937176  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 2797512 - 2797451
Alignment:
Q  203 accttttggttgtcaaaaactttcttggcaagagtgatttttcccagtcctcccattccaac 264  Q
    ||||||||  |||| ||||||  ||||||||||||| ||||||| || ||||||||||||||    
T  2797512 accttttgactgtcgaaaactagcttggcaagagtggtttttcctagacctcccattccaac 2797451  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 22115408 - 22115327
Alignment:
Q  11 acatcatcaaacactacaacatacctttttccttgcaagtagtttctcacttcatcaactaataactttccatccatttgat 92  Q
    |||||||||||||| ||||| ||||| |||   |||||||| |||||||||||||||  ||||||   || |||||||||||    
T  22115408 acatcatcaaacacgacaacgtacctctttttctgcaagtattttctcacttcatcagttaataatcctcgatccatttgat 22115327  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 29610707 - 29610771
Alignment:
Q  8 catacatcatcaaacactacaacatacctttttccttgcaagtagtttctcacttcatcaactaa 72  Q
    |||||||| |||||||||||||  ||||||||  | |||||||| |||||||||||||| |||||    
T  29610707 catacatcgtcaaacactacaaggtaccttttctcctgcaagtaatttctcacttcatcgactaa 29610771  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 27294654 - 27294606
Alignment:
Q  213 tgtcaaaaactttcttggcaagagtgatttttcccagtcctcccattcc 261  Q
    ||||||||||||||||| | |||||| |||||||  |||||||||||||    
T  27294654 tgtcaaaaactttcttgactagagtggtttttccttgtcctcccattcc 27294606  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 264
Target Start/End: Complemental strand, 34980317 - 34980217
Alignment:
Q  164 gacaccgtgatccatacatgacagtcaaaatgtttaacgaccttttggttgtcaaaaactttcttggcaagagtgatttttcccagtcctcccattccaa 263  Q
    ||||| |||||||||||| |||| ||||| |||   || |||| || | | ||||||||||| || |||||||| ||||||||  | |||||||||||||    
T  34980317 gacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacttttttagcaagagttatttttccttgccctcccattccaa 34980218  T
Q  264 c 264  Q
    |    
T  34980217 c 34980217  T

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