View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5218-Insertion-12 (Length: 407)
Name: NF5218-Insertion-12
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218-Insertion-12 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 8 - 407
Target Start/End: Original strand, 42509081 - 42509480
Alignment:
| Q |
8 |
ttccaatcacagtagaagaaatgatcacatgaagttgtcttttataagagatgacagagagaggtttgatttgcaagagttgctgagagcttctgctgag |
107 |
Q |
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| T |
42509081 |
ttccaaccacagtagaagaaatgatcacatgaagttgtcttttataagagatgacagagagaggtttgatttgcaagagttgctgagagcttctgccgag |
42509180 |
T |
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| Q |
108 |
attttgggaagtggtttttatagttcttcttacaaggcctctttgacgaatgggccaacaatagtggtgaagaggtttaagcaaatgaacaatgtaggga |
207 |
Q |
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| T |
42509181 |
attttgggaagtggtttttatagttcttcttacaaggcctctttgacgaatgggccaacaatagtggtgaagaggtttaagcaaatgaacaatgtaggga |
42509280 |
T |
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| Q |
208 |
aggaagagtttcaagagcatatgagaaggattggaaggttgaaccatcctaatttgattcctcttgttgcttactattatagaaaagaagaaaagctctt |
307 |
Q |
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| T |
42509281 |
aggaagagtttcaagagcatatgagaaggattggaaggttgaaccatcctaatttgattcctcttgttgcttactattatagaaaagaagagaagctctt |
42509380 |
T |
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| Q |
308 |
ggttactgactttgttcagaacggtagcctagctgttcgccttcatggtacgtcttatttctaannnnnnnaatgacataatcgatcaagagtaatctag |
407 |
Q |
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| T |
42509381 |
ggttaccgactttgttcagaacggtagcctagctgttcgccttcatggtacgtcttatttctaatttttttaatgacagaatcgatcaagagtaatctag |
42509480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 304
Target Start/End: Original strand, 36125383 - 36125513
Alignment:
| Q |
174 |
gtgaagaggtttaagcaaatgaacaatgtagggaaggaagagtttcaagagcatatgagaaggattggaaggttgaaccatcctaatttgattcctcttg |
273 |
Q |
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| T |
36125383 |
gtgaaaagatttaagcacatgaacaaagttggcaaaaaagagttctatgatcatatgagaaggcttggaaggttgacacatcctaatctactccctctag |
36125482 |
T |
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| Q |
274 |
ttgcttactattatagaaaagaagaaaagct |
304 |
Q |
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| T |
36125483 |
ttgcattctattatggaaaagatgagaagct |
36125513 |
T |
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