View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5218-Insertion-14 (Length: 350)
Name: NF5218-Insertion-14
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218-Insertion-14 |
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| [»] scaffold0209 (2 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0209 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 9548 - 9893
Alignment:
| Q |
8 |
ccaattcctcgtcacttcctagttcgtgcacaatcacttctttctcgaccaacaactctgcatcatctttggtgtgaataagagaatcaagaaaagaaac |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9548 |
ccaattcctcgtcacttcctagttcgtgcacaatcacttctttctcgaccaacaactctgcatcatctttggtgtgaataagagaatcaagaaaagaaac |
9647 |
T |
|
| Q |
108 |
atagttacaaatatagggcttgtctggatagtgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaattgaggg |
207 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9648 |
atagttacaaatatagggctcgtctggatagtgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaattgaggg |
9747 |
T |
|
| Q |
208 |
aatagaaatttagctttgaaacatgttaaacaacctaaacaaagaaaccaactgaaaaagggctttttctgaaatttaatgtcaagta---atcggttgt |
304 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
9748 |
aatagaaatttagctttgaaacatggtaaacaacctaaacaaagaaaccaactgaaaaagggctttttctgaaatttaatgtcaagtaagcatcggttgt |
9847 |
T |
|
| Q |
305 |
gaactttctgaaagcttatgccaacttgtttaagctttgttgcagt |
350 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9848 |
gaactttctgaaagcttatgccaacttgtttaagctttgttgcagt |
9893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 23002 - 23347
Alignment:
| Q |
8 |
ccaattcctcgtcacttcctagttcgtgcacaatcacttctttctcgaccaacaactctgcatcatctttggtgtgaataagagaatcaagaaaagaaac |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23002 |
ccaattcctcgtcacttcctagttcgtgcacaatcacttctttctcgaccaacaactctgcatcatctttggtgtgaataagagaatcaagaaaagaaac |
23101 |
T |
|
| Q |
108 |
atagttacaaatatagggcttgtctggatagtgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaattgaggg |
207 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23102 |
atagttacaaatatagggctcgtctggatagtgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaattgaggg |
23201 |
T |
|
| Q |
208 |
aatagaaatttagctttgaaacatgttaaacaacctaaacaaagaaaccaactgaaaaagggctttttctgaaatttaatgtcaagta---atcggttgt |
304 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
23202 |
aatagaaatttagctttgaaacatggtaaacaacctaaacaaagaaaccaactgaaaaagggctttttctgaaatttaatgtcaagtaagcatcggttgt |
23301 |
T |
|
| Q |
305 |
gaactttctgaaagcttatgccaacttgtttaagctttgttgcagt |
350 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23302 |
gaactttctgaaagcttatgccaacttgtttaagctttgttgcagt |
23347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 607316 - 607094
Alignment:
| Q |
10 |
aattcctcgtcacttcctagttcgtgcacaatcacttctttctcgaccaacaactctgcatcatctttggtgtgaataagagaatcaagaaaagaaacat |
109 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
607316 |
aattcctcgtggcttcctagttcatgcacaatcatatctttctcaaccaacaactctgcatcatctttggtgtcaataagagaatcaagcaaagaaacat |
607217 |
T |
|
| Q |
110 |
agttacaaatatagggcttgtctggatagtgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaattgagggaa |
209 |
Q |
| |
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| || ||||| ||||||||||||||||| ||||| ||||||||||| || || |||||||||| | ||| |||| |||| ||||| ||||| ||||| |
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| T |
607216 |
aattgcaaatgtagggcttgtctggataatgacactgctcaaaagcaattagattcctaagaatgctttctgttgagtggtttacttttaattgtgggaa |
607117 |
T |
|
| Q |
210 |
tagaaatttagctttgaaacatg |
232 |
Q |
| |
|
|||||| |||||||||| |||| |
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| T |
607116 |
cagaaatctagctttgaagcatg |
607094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 10 - 350
Target Start/End: Original strand, 115149 - 115501
Alignment:
| Q |
10 |
aattcctcgtcacttcctagttcgtgcacaatcacttctttctcgaccaacaactctgcatcatctttggtgtgaataagagaatcaagaaaagaaacat |
109 |
Q |
| |
|
|||||||||| ||||| || ||||||||||||||||||||||| || | ||||||||| || |||| |||||||||||||||||||| |||||||||| |
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| T |
115149 |
aattcctcgttgcttcccagatcgtgcacaatcacttctttctcaactagcaactctgcgtcttcttcggtgtgaataagagaatcaatcaaagaaacat |
115248 |
T |
|
| Q |
110 |
agttacaaatatagggcttgtctggatagtgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaattgagggaa |
209 |
Q |
| |
|
| || ||||| || |||| || ||||||||||| ||||||||||| | | |||||| | |||||||||||| | ||| || ||||| || || ||||| |
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|
| T |
115249 |
aattgcaaatgtaaggctcatcaggatagtgacactgctcaaaagcaactatgttcctcaaaacacattcggtcgcatgatctacttttaactgtgggaa |
115348 |
T |
|
| Q |
210 |
tagaaatttagctttga---------aacatgttaaacaacctaaacaaagaaaccaactgaaaaagggctttttctgaaatttaatgtcaag---taat |
297 |
Q |
| |
|
||||||| ||||||||| |||| | ||||||||||||||||||||||||||| || || || ||||||| ||| || |||||||| | || |
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|
| T |
115349 |
tagaaatctagctttgaagcacttgcaacacggtaaacaacctaaacaaagaaaccaactcaacaaaggttttttctcaaactttatgtcaagcaatgat |
115448 |
T |
|
| Q |
298 |
cggttgtgaactttctgaaagcttatgccaacttgtttaagctttgttgcagt |
350 |
Q |
| |
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| ||| ||||| |||| ||||||||| ||| ||| || | |||||||||||| |
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| T |
115449 |
ctgttatgaaccttctcaaagcttataccagcttcattcaactttgttgcagt |
115501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 9 - 348
Target Start/End: Complemental strand, 178642 - 178291
Alignment:
| Q |
9 |
caattcctcgtcacttcctagttcgtgcacaatcacttctttctcgaccaacaactctgcatcatctttggtgtgaataagagaatcaagaaaagaaaca |
108 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| | | ||||||||| || | | ||||| ||||||||||||| |||||||||||||||| ||||||||| |
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|
| T |
178642 |
caattcctcgtcgcttcccagttcgtgcaccacaatttctttctcaacaagccactctacatcatctttggtttgaataagagaatcaatcaaagaaaca |
178543 |
T |
|
| Q |
109 |
tagttacaaatatagggcttgtctggatagtgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaattgaggga |
208 |
Q |
| |
|
|| || ||||| || |||| ||| || |||||||||||||| |||| || ||||| |||||||||||||| ||||||||||| ||||| || || |||| |
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|
| T |
178542 |
taattgcaaatgtaaggctcgtcagggtagtgacattgctcgtaagcgattaggtttctaagaacacattcagttgtatggtctacttttaactgtggga |
178443 |
T |
|
| Q |
209 |
atagaaatttagct---------ttgaaacatgttaaacaacctaaacaaagaaaccaactgaaaaagggctttttctgaaatttaatgtcaagta---a |
296 |
Q |
| |
|
| ||||| ||||| ||| |||||| ||||||||||||||| | ||||||||| || || || ||||||| ||| ||||||||||||| | |
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| T |
178442 |
actgaaatctagctttaacacacttgcaacatggtaaacaacctaaacataaaaaccaactcaacaaagggtttttctcaaacttaatgtcaagtaagga |
178343 |
T |
|
| Q |
297 |
tcggttgtgaactttctgaaagcttatgccaacttgtttaagctttgttgca |
348 |
Q |
| |
|
|| ||| ||||| |||| ||||||||| ||| ||| || | |||||||||| |
|
|
| T |
178342 |
tctgttatgaaccttctcaaagcttataccagcttcattcaactttgttgca |
178291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 152855 - 152670
Alignment:
| Q |
18 |
gtcacttcctagttcgtgcacaatcacttctttctcgaccaacaactctgcatcatctttggtgtgaataagagaatcaagaaaagaaacatagttacaa |
117 |
Q |
| |
|
||||||||| | ||| |||||||||||||| |||||||||||||| || ||||| ||| || || ||||||||||||| || |||||||| || || |
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|
| T |
152855 |
gtcacttcccatttcatgcacaatcacttccttctcgaccaacaaatcaacatcaacttgtgtatgtataagagaatcaacaagtgaaacataattgcat |
152756 |
T |
|
| Q |
118 |
atatagggcttgtctggatagtgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaattg |
203 |
Q |
| |
|
||||| || | ||| |||| |||||||| || | || ||||||||||| ||||| ||||| ||||| || || || |||||||| |
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|
| T |
152755 |
atataaggttgttcttgatactgacattgttctagggcaatgaggttccttagaacgcattctgttgtgtgatcaaccttcaattg |
152670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 161331 - 161147
Alignment:
| Q |
19 |
tcacttcctagttcgtgcacaatcacttctttctcgaccaacaactctgcatcatctttggtgtgaataagagaatcaagaaaagaaacatagttacaaa |
118 |
Q |
| |
|
|||||||| | ||| |||||||||||||| |||||||||||||| || ||||| | | || || ||||||||||||| || |||||||| || || | |
|
|
| T |
161331 |
tcacttcccatttcatgcacaatcacttccttctcgaccaacaaatcaacatcaacatgtgtatgtataagagaatcaacaagtgaaacataattgcata |
161232 |
T |
|
| Q |
119 |
tatagggcttgtctggatagtgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaattg |
203 |
Q |
| |
|
|||| || | ||| |||| |||||||| || | || ||||||||||| | ||||||||| ||||| || || || |||||||| |
|
|
| T |
161231 |
tataaggttgttcttgataatgacattgttctagggcaatgaggttccttaaaacacattctgttgtgtgatcaaccttcaattg |
161147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 106551 - 106618
Alignment:
| Q |
139 |
tgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaattgagg |
206 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||||||||| ||||| |||| ||||| |||||||| |
|
|
| T |
106551 |
tgacattgttccaaagcaatgaggttcctaagaacacattcagttgtttggtgtactttgaattgagg |
106618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 143299 - 143245
Alignment:
| Q |
130 |
tctggatagtgacattgctcaaaagccatgaggttcctaagaacacattcggttg |
184 |
Q |
| |
|
|||| |||||||||||| ||||| || || |||||||||||||||||||| |||| |
|
|
| T |
143299 |
tctgaatagtgacattgttcaaatgcgattaggttcctaagaacacattctgttg |
143245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 298674 - 298613
Alignment:
| Q |
139 |
tgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaa |
200 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||||||||||| |||| ||||| |||||||| |
|
|
| T |
298674 |
tgacattgttcaaacgcgatgaggttcctaagaacacattcagttgcttggtctactttcaa |
298613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 37437899 - 37437954
Alignment:
| Q |
55 |
accaacaactctgcatcatctttggtgtgaataagagaatcaagaaaagaaacata |
110 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
37437899 |
accaacaactccacgtcatctttggtgtgaataagacaatcaatcaaagaaacata |
37437954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 200
Target Start/End: Original strand, 45958323 - 45958433
Alignment:
| Q |
90 |
agaatcaagaaaagaaacatagttacaaatatagggcttgtctggatagtgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatgg |
189 |
Q |
| |
|
|||||||| |||||||||||||| || || | || | || || |||||||||||| ||| | || |||||||||||||||||||||| |||| ||| |
|
|
| T |
45958323 |
agaatcaattaaagaaacatagttccatatgaaaggttggtttgaatagtgacattgttcacacgcgatgaggttcctaagaacacattatgttgcttgg |
45958422 |
T |
|
| Q |
190 |
tccactttcaa |
200 |
Q |
| |
|
|| |||||||| |
|
|
| T |
45958423 |
tctactttcaa |
45958433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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