View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5218-Insertion-19 (Length: 161)
Name: NF5218-Insertion-19
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218-Insertion-19 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 7e-69; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 7e-69
Query Start/End: Original strand, 6 - 161
Target Start/End: Original strand, 39543250 - 39543405
Alignment:
| Q |
6 |
caaaatcaaccttcgactctggaaatctctgccctgaagacaccacaaatgttggtccctcttctccaccagtgctaccacaataaatccttgccaatcc |
105 |
Q |
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| T |
39543250 |
caaaatcaaccttcgactctggaaacctctgccctgaagataccacaaatgttggtccttcttctccaccagtgctgccacaataaatcctagccaatcc |
39543349 |
T |
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| Q |
106 |
cggaactggtcgatgctcttccacccaatcaattagacccaagaaatgctcctctg |
161 |
Q |
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| T |
39543350 |
aggaactggtcgatgctcttccacccaatcaattagacccaagaaatgctcctctg |
39543405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 6 - 161
Target Start/End: Original strand, 39553269 - 39553424
Alignment:
| Q |
6 |
caaaatcaaccttcgactctggaaatctctgccctgaagacaccacaaatgttggtccctcttctccaccagtgctaccacaataaatccttgccaatcc |
105 |
Q |
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| T |
39553269 |
caaaatcaaccttcgactctggaaacctctgccctgaagatacaacaaatgttggtccttcttctccaccagtgctgccacaataaatcctagccaatcc |
39553368 |
T |
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| Q |
106 |
cggaactggtcgatgctcttccacccaatcaattagacccaagaaatgctcctctg |
161 |
Q |
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| T |
39553369 |
aggaactggtcgatgctcttccacccaatcaattagacccaagaaatgctcctctg |
39553424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 39586378 - 39586523
Alignment:
| Q |
8 |
aaatcaaccttcgactctggaaatctctgccctgaagacaccacaaatgttggtccctcttctccaccagtgctaccacaataaatccttgccaatcccg |
107 |
Q |
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| T |
39586378 |
aaatctaccttcgactctgaaaacctttgcccagaagacaccacaaatgtcggtccatctgctccaccagttactccgcaataaatccttgccaatcccg |
39586477 |
T |
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| Q |
108 |
gaactggtcgatgctcttccacccaatcaattagacccaagaaatg |
153 |
Q |
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| T |
39586478 |
gaaccggtcgatgctcttccacccaatcaattagtcccaagaaatg |
39586523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 159
Target Start/End: Original strand, 17503152 - 17503234
Alignment:
| Q |
77 |
gtgctaccacaataaatccttgccaatcccggaactggtcgatgctcttccacccaatcaattagacccaagaaatgctcctc |
159 |
Q |
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| T |
17503152 |
gtgccaccactataaatcttcgccaatccaggaacaggtcgatgtgcttccacccaatcaatgagccctaggaaatgttcctc |
17503234 |
T |
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