View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5218-Insertion-3 (Length: 903)
Name: NF5218-Insertion-3
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218-Insertion-3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 506; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 8 - 585
Target Start/End: Complemental strand, 7962015 - 7961438
Alignment:
| Q |
8 |
agatgaaatgattaaattgaaagaatatccagatgatggtgacttttacaagctccacgctgctaaaaagggttcttctaggccacgtaaaacagggaaa |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7962015 |
agatggaatgattaaattgaaagaatatccagatgatggtgacttttacaagctccacgctgctaaaaagggttcttctaggccacgtaaaacagggaaa |
7961916 |
T |
|
| Q |
108 |
tttaccaagagtcttacataaaaacaatttcgagatgatgcggctctttcaagatcaataactatagacaagatggaagaggttgcacaagggagaattt |
207 |
Q |
| |
|
||||||||||||||| | || |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7961915 |
tttaccaagagtcttgcgtataaacaatttcgagatgatgcggctctttcaagattaatgactatagacaagatggaagaggttgcacaagggagaattt |
7961816 |
T |
|
| Q |
208 |
ggaccggtaaagatgcaatatctaatggtttggtcgatgctattggtggaatatcgcacgctattgctatagcaaaattgaaggccaatattcctcaaaa |
307 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7961815 |
ggactggtaaagatgcaatatctaatgatttggtcgatgctattggtggaatatcgcacgctattgctatagcaaaattgaaggccaatattcctcaaaa |
7961716 |
T |
|
| Q |
308 |
caaacatgttactattgtggagttctcttactcttcctgtggttttaagggttattgactattctttcgttgaatataataactacgaggaaaaaatcat |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7961715 |
caaacatgttactattgtggagttctcttactcttcctgtggttttaagggttattgactattatttcgttgaatataataactacgagggaaaaatcat |
7961616 |
T |
|
| Q |
408 |
attaatattattagttattatttaagatttatgccattactactatgaagtatgaaagtttattataaccaattccttagtttttatcttgcactattca |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7961615 |
attaatattattagttattatttaagatttattccattactactatgatgtatgaaagtttattataaccaattccttagtttttatcttgcactattca |
7961516 |
T |
|
| Q |
508 |
ttgtcttaagcacagtttattactattgcatttggtttctcccttctctgcatcttataaacagtttattaatactct |
585 |
Q |
| |
|
| ||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||| |
|
|
| T |
7961515 |
tcgtcttaagcacaggttaatactattgcatttggtttctcccttctctgcattttataaacaggttattaattctct |
7961438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 700 - 902
Target Start/End: Complemental strand, 7961435 - 7961233
Alignment:
| Q |
700 |
atttgattttgaaatacgattgacacggtagttacatattttgatggcatgcttcaattatgaaactttcccatatgattaggtggttgtatataggggt |
799 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7961435 |
atttgattttgaaatacaattgacacggtagttacatattttgatggcatgcttcaattatgaaactttcccatatgattaggtggttgtatataggggt |
7961336 |
T |
|
| Q |
800 |
gggcaagaattttgaaatggtcaaggaaaacaattctaacaattttgaaatagcaatactaaggactgtgaggactgttgtatagttgttggttttactt |
899 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7961335 |
gggcaagaattttgaaatggtcaaggaaaacaattctaacaattttgaaatagcaatactaaggactgtgaggactgttgtatagttgttggttttactt |
7961236 |
T |
|
| Q |
900 |
tcg |
902 |
Q |
| |
|
||| |
|
|
| T |
7961235 |
tcg |
7961233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 467 - 758
Target Start/End: Complemental strand, 7971603 - 7971312
Alignment:
| Q |
467 |
ttattataaccaattccttagtttttatc-ttgcactattcattgtcttaagcacagtttattactattgcatttggtttctcccttctctgcatcttat |
565 |
Q |
| |
|
||||||| |||||| ||||||||||| || ||||||||||||| |||||||||||| |||||||| ||||||||| |||||||||||||||||| |||| |
|
|
| T |
7971603 |
ttattatgaccaat-ccttagtttttttccttgcactattcatcatcttaagcacaggttattacttttgcatttgttttctcccttctctgcattttat |
7971505 |
T |
|
| Q |
566 |
aaacagtttattaatactctcaacgctacagaaggaagatagggtaaaaatctctttctgggttttatttgtttcttctctttcaggcaactcaatcttg |
665 |
Q |
| |
|
|||||| ||||||||||| |||| ||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
7971504 |
aaacaggttattaatactttcaaagctacagaaggaagatatggcaaaaatctctttctgggttttttttgtttcttctctttcgggcaactcaatcttg |
7971405 |
T |
|
| Q |
666 |
agaagagtgtgttgtccagtgatgcaatttaatgatttgattttgaaatacgattgacacggtagttacatattttgatggcatgcttcaatt |
758 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7971404 |
agaagagtgtgttgtcttgtgaagcaatttaatgatttgattttgaaatacaattgacacagtagttacatattttgatggcatgcttcaatt |
7971312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 107 - 420
Target Start/End: Complemental strand, 7972286 - 7971969
Alignment:
| Q |
107 |
atttaccaagagtcttacataaaaacaatttcgagatgatgcggctctttcaagatcaataactatagacaagatggaagaggttgcacaagggagaatt |
206 |
Q |
| |
|
|||| ||||||||| || || ||||||||||||||||||| || |||||| |||||||| ||| ||||||||||||||||||||||||| |||| ||| |
|
|
| T |
7972286 |
attttccaagagtcgtatgtataaacaatttcgagatgatgtggatctttccagatcaatgactgtagacaagatggaagaggttgcacagaggaggatt |
7972187 |
T |
|
| Q |
207 |
tggaccggtaaagatgcaatatctaatggtttggtcgatgctattggtggaatatcgcacgctattgctatagcaaaattgaaggccaatattcctcaaa |
306 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7972186 |
tggaccggtaaagatgcagtatctaatggtttggtcgatgctatcagtggactatcgcgtgctattgctatagcaaaattgaaggccaatcttcctcaaa |
7972087 |
T |
|
| Q |
307 |
acaaacatgttactattgtggagttctcttactcttcctgtggttttaagggtt-----attgactattctttcgttgaatataataactacgaggaaaa |
401 |
Q |
| |
|
||| ||||||||||||||||||| |||| ||||||||||||||||| ||||||| |||||||||||| | ||||||||||||||||| |||||||| |
|
|
| T |
7972086 |
acagacatgttactattgtggagctctcatactcttcctgtggtttgaagggttattgtattgactattctcttgttgaatataataacta-gaggaaaa |
7971988 |
T |
|
| Q |
402 |
aatcatattaatattatta |
420 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
7971987 |
aatcataataatattatta |
7971969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 754 - 835
Target Start/End: Complemental strand, 7970199 - 7970118
Alignment:
| Q |
754 |
caattatgaaactttcccatatgattaggtggttgtatataggggtgggcaagaattttgaaatggtcaaggaaaacaattc |
835 |
Q |
| |
|
||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
7970199 |
caattatgacactttccaatatgattacttggttgtatataggggtgggcaagaattttggaatagtcaaggaaaacaattc |
7970118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 92
Target Start/End: Complemental strand, 7972371 - 7972286
Alignment:
| Q |
10 |
atgaaatgattaaattgaaagaatatccagatgatggtgacttttacaagctccacgctgcta---aaaagggttcttctaggcca |
92 |
Q |
| |
|
|||||| |||| | ||| |||||||||||||||||||| | | |||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
7972371 |
atgaaaagattgatttggaagaatatccagatgatggtagatatcacaagctccacgctgctaaacaacagggttcttctaggcca |
7972286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 2e-54; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 145 - 329
Target Start/End: Original strand, 47293429 - 47293613
Alignment:
| Q |
145 |
atgcggctctttcaagatcaataactatagacaagatggaagaggttgcacaagggagaatttggaccggtaaagatgcaatatctaatggtttggtcga |
244 |
Q |
| |
|
||||||||||||| |||||||| || |||||||||||||||||||||||||| || || ||||||||| |||| || ||| ||||| |||||||||| || |
|
|
| T |
47293429 |
atgcggctctttccagatcaatgaccatagacaagatggaagaggttgcacagggaaggatttggaccagtaaggacgcagtatctcatggtttggttga |
47293528 |
T |
|
| Q |
245 |
tgctattggtggaatatcgcacgctattgctatagcaaaattgaaggccaatattcctcaaaacaaacatgttactattgtggag |
329 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||| ||| || ||| |||||||| |
|
|
| T |
47293529 |
tgctattggtggactatcgcgcgctattgctatagcaaaattgaaggccaatatacctcaaaacagacaggtcactcttgtggag |
47293613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 129 - 328
Target Start/End: Complemental strand, 56208719 - 56208520
Alignment:
| Q |
129 |
aaacaatttcgagatgatgcggctctttcaagatcaataactatagacaagatggaagaggttgcacaagggagaatttggaccggtaaagatgcaatat |
228 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||| |||||||| ||||||||||||||||||| ||||| ||| |||||||||||||||| ||| |
|
|
| T |
56208719 |
aaacaatttcgagataatgcggctctttccagatcaatgactatagatgagatggaagaggttgcacaggggagggtttagaccggtaaagatgcactat |
56208620 |
T |
|
| Q |
229 |
ctaatggtttggtcgatgctattggtggaatatcgcacgctattgctatagcaaaattgaaggccaatattcctcaaaacaaacatgttactattgtgga |
328 |
Q |
| |
|
|| ||||||||| |||||||||||||| |||| | |||||||||||||||||||||||||| ||| |||||| |||||||||||||| ||||||| |
|
|
| T |
56208619 |
ctcttggtttggttgatgctattggtgggctatctcgtgctattgctatagcaaaattgaaggctggtatacctcaagacaaacatgttactgttgtgga |
56208520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 147 - 334
Target Start/End: Original strand, 55705856 - 55706043
Alignment:
| Q |
147 |
gcggctctttcaagatcaataactatagacaagatggaagaggttgcacaagggagaatttggaccggtaaagatgcaatatctaatggtttggtcgatg |
246 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||||||||||||||| || ||||| |||||||||||||||| ||| |||| |||||||||| |||| |
|
|
| T |
55705856 |
gcggctctttccagatctatgactatagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatg |
55705955 |
T |
|
| Q |
247 |
ctattggtggaatatcgcacgctattgctatagcaaaattgaaggccaatattcctcaaaacaaacatgttactattgtggagttctc |
334 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| |||||||||| || ||||| |||||||||| | | |||| | |||||||| |||| |
|
|
| T |
55705956 |
ctattggtgggatatcgcgtgctattgctattacaaaattgaaagctaatatacctcaaaacagagaggttattgttgtggagctctc |
55706043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 172 - 305
Target Start/End: Complemental strand, 45876881 - 45876748
Alignment:
| Q |
172 |
tagacaagatggaagaggttgcacaagggagaatttggaccggtaaagatgcaatatctaatggtttggtcgatgctattggtggaatatcgcacgctat |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| |||||||||| |||||||||||||| |||| | ||||| |
|
|
| T |
45876881 |
tagacaagatggaagaggttgcacaagggagggtttggaccggtaaggatgcagcatcccatggtttggttgatgctattggtgggctatctcgtgctat |
45876782 |
T |
|
| Q |
272 |
tgctatagcaaaattgaaggccaatattcctcaa |
305 |
Q |
| |
|
|||||||||||||||||| || ||||| |||||| |
|
|
| T |
45876781 |
tgctatagcaaaattgaaagctaatatacctcaa |
45876748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 172 - 305
Target Start/End: Complemental strand, 45858950 - 45858817
Alignment:
| Q |
172 |
tagacaagatggaagaggttgcacaagggagaatttggaccggtaaagatgcaatatctaatggtttggtcgatgctattggtggaatatcgcacgctat |
271 |
Q |
| |
|
|||||||||||||||||| |||||| | ||| ||||||||||||| |||||| ||||| ||||| |||| |||||||||||||| |||| | ||||| |
|
|
| T |
45858950 |
tagacaagatggaagaggctgcacaggagagggtttggaccggtaaggatgcagtatctcatggtctggttgatgctattggtgggctatcacgtgctat |
45858851 |
T |
|
| Q |
272 |
tgctatagcaaaattgaaggccaatattcctcaa |
305 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||| |
|
|
| T |
45858850 |
tgctatagccaaattgaaggccaatatacctcaa |
45858817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 161 - 307
Target Start/End: Original strand, 54304207 - 54304359
Alignment:
| Q |
161 |
atcaataactatagacaagatggaagaggttgcacaagggag----aa--tttggaccggtaaagatgcaatatctaatggtttggtcgatgctattggt |
254 |
Q |
| |
|
|||||| || |||||||| |||||||||||| |||| ||||| || ||||||| ||||| || |||| |||| |||||||| ||||||||||| |
|
|
| T |
54304207 |
atcaatgacaatagacaaaatggaagaggttccacaggggagggggaaggtttggactggtaaggacgcaacatctctcggtttggttgatgctattggc |
54304306 |
T |
|
| Q |
255 |
ggaatatcgcacgctattgctatagcaaaattgaaggccaatattcctcaaaa |
307 |
Q |
| |
|
|| || || | |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
54304307 |
gggatgtctcgtgctattgctatagcaaaattgaaggccaatatacctcaaaa |
54304359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 8e-39; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 172 - 318
Target Start/End: Original strand, 35854542 - 35854688
Alignment:
| Q |
172 |
tagacaagatggaagaggttgcacaagggagaatttggaccggtaaagatgcaatatctaatggtttggtcgatgctattggtggaatatcgcacgctat |
271 |
Q |
| |
|
||||||||||| || |||||||||| ||||| |||||||||||||| || ||| |||| |||||||||| |||||||||||||| ||||||| ||||| |
|
|
| T |
35854542 |
tagacaagatgaaaaaggttgcacatgggaggatttggaccggtaaggacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctat |
35854641 |
T |
|
| Q |
272 |
tgctatagcaaaattgaaggccaatattcctcaaaacaaacatgtta |
318 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||| |||| |
|
|
| T |
35854642 |
tgctatagcaaaattgaaggccaatatacctcaaaacagacaggtta |
35854688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 174 - 318
Target Start/End: Original strand, 10521303 - 10521447
Alignment:
| Q |
174 |
gacaagatggaagaggttgcacaagggagaatttggaccggtaaagatgcaatatctaatggtttggtcgatgctattggtggaatatcgcacgctattg |
273 |
Q |
| |
|
||||||||| ||||| || |||| |||| ||||||| ||| || || ||| |||| | |||||||| |||||||||||||| ||||||| ||||||| |
|
|
| T |
10521303 |
gacaagatgaaagagattccacataggaggatttggatcgggaaggacgcagcatctcaaggtttggttgatgctattggtgggatatcgcgtgctattg |
10521402 |
T |
|
| Q |
274 |
ctatagcaaaattgaaggccaatattcctcaaaacaaacatgtta |
318 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||||||||||| |||| |
|
|
| T |
10521403 |
ctatcgcaaaattcaaggccaatatacctcaaaacaaacaggtta |
10521447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 248
Target Start/End: Complemental strand, 35802580 - 35802504
Alignment:
| Q |
172 |
tagacaagatggaagaggttgcacaagggagaatttggaccggtaaagatgcaatatctaatggtttggtcgatgct |
248 |
Q |
| |
|
||||||||||| || |||||||||| ||||| |||||||||||||| || ||| |||| |||||||||| |||||| |
|
|
| T |
35802580 |
tagacaagatgaaaaaggttgcacatgggaggatttggaccggtaaggacgcagcatctcatggtttggttgatgct |
35802504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 174 - 318
Target Start/End: Original strand, 24357457 - 24357601
Alignment:
| Q |
174 |
gacaagatggaagaggttgcacaagggagaatttggaccggtaaagatgcaatatctaatggtttggtcgatgctattggtggaatatcgcacgctattg |
273 |
Q |
| |
|
||||||||||| |||| ||||| |||||| ||||||| |||||||||||| ||| |||||||||| |||||||||||||| | || | ||||||| |
|
|
| T |
24357457 |
gacaagatggagaaggtagcacaggggagagtttggactggtaaagatgcagcatcacatggtttggttgatgctattggtggcctttcccgagctattg |
24357556 |
T |
|
| Q |
274 |
ctatagcaaaattgaaggccaatattcctcaaaacaaacatgtta |
318 |
Q |
| |
|
| ||||||||||||||||||||||| |||||| || |||| |||| |
|
|
| T |
24357557 |
ccatagcaaaattgaaggccaatatacctcaagacgaacaggtta |
24357601 |
T |
|
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