View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5218-Insertion-4 (Length: 810)
Name: NF5218-Insertion-4
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 8 - 405
Target Start/End: Complemental strand, 28714084 - 28713689
Alignment:
| Q |
8 |
agttcaaagcaaacaaaagttgatccaaaaggcatgcaaaggggtcaaatcagacatcacaagcaaaatattagatgctgacacggacacacatgcttgc |
107 |
Q |
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| T |
28714084 |
agttcaaagcaaacaaaagttgatccaaaaggcgtgcaaaggggtcaaatcagacatcgcaagcaa--tattagatgctgacactgacacacatgcttgc |
28713987 |
T |
|
| Q |
108 |
aagctgcaagcattgctggtattagacattatgtgatggttgtgattctccatagaatctcatccatttttatgcctaactttttcaaaatcaacctctg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28713986 |
aagctgcaagcattgctggtattagacattatgtgatggttgtgattctccatagaatctcatccatttttatgcctaactttttcaacatcaacctctg |
28713887 |
T |
|
| Q |
208 |
aactcaaacgatgattaggaagtgatcagtgtctgacaatggcacgacgccgagacatgtggttacatgcatttttattccattttctcaaattattatc |
307 |
Q |
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| T |
28713886 |
aactcaaacaatgattaggaagtgatcagtgtctgacaatggcacgacgccgagacatgtggttacatgcatttttattccattttctcaaattattatc |
28713787 |
T |
|
| Q |
308 |
ggtgttgacagtgcttgtatgtgtgttagtgctctgtagattttaacattaatagattcttttctcggaagttatcatcgcgatgaattcatgcaatt |
405 |
Q |
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| T |
28713786 |
ggtgttgacagtgcctgtatgtgtgttagtgctctgtagattttaacattaatagattcttttctcggaagttatcatcgcgatgaattcatgcaatt |
28713689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 436 - 623
Target Start/End: Complemental strand, 28713657 - 28713470
Alignment:
| Q |
436 |
tggcaatacctaacaccaagaatgcgagctgcttccctcttatccatgatagctttgaaaccaccttcataaaatttacgcatcccagatggtctagcca |
535 |
Q |
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| T |
28713657 |
tggcaatacctaacaccaagaatgcgagctgcttccctcttatccatgatagctttgaaaccaccttcataaaatttacgcatcccagctggcctagcca |
28713558 |
T |
|
| Q |
536 |
tgaatgcttgccaagcctggatactatatcttgcggcataagctgcagcagccacagcaatccctgaaattaatggtgcttcctgtcc |
623 |
Q |
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| T |
28713557 |
tgaatgcttgccaagtctggatactatatcttgcggcataagctgcagcagccacagcaatccctgaaattaatggtgtttcctgtcc |
28713470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 690 - 810
Target Start/End: Complemental strand, 28713401 - 28713281
Alignment:
| Q |
690 |
actcctccatccaacataccacccttcaactgttccactatatcataacataagggtcccctaagatgcagccgagtgctgacttagaaggagagtatta |
789 |
Q |
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| T |
28713401 |
actcctccatccaacataccacccttcaactgttccactatatcataacataagggtcccctaagatgcagccgagtgctgacttagaaggagagtatta |
28713302 |
T |
|
| Q |
790 |
agaaggaggtttggggttcga |
810 |
Q |
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| T |
28713301 |
agaaggaggttcggggttcga |
28713281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 440 - 613
Target Start/End: Original strand, 48904681 - 48904854
Alignment:
| Q |
440 |
aatacctaacaccaagaatgcgagctgcttccctcttatccatgatagctttgaaaccaccttcataaaatttacgcatcccagatggtctagccatgaa |
539 |
Q |
| |
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|||||||||||||||| ||| |||||||||||||||| ||| ||| | ||||||||||||||||||||||||| ||| ||||||||| |||| |
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| T |
48904681 |
aatacctaacaccaagtatgagagctgcttccctcttcgtcatagtaggctgaaaaccaccttcataaaatttacgcaatgcaggtggtctagctttgaa |
48904780 |
T |
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| Q |
540 |
tgcttgccaagcctggatactatatcttgcggcataagctgcagcagccacagcaatccctgaaattaatggtg |
613 |
Q |
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| T |
48904781 |
tgcttgccaagcctggataccatatttaccggcatatgctgcagcagccacagcaatcccagcaattaaaggtg |
48904854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 288 - 319
Target Start/End: Complemental strand, 18570997 - 18570966
Alignment:
| Q |
288 |
cattttctcaaattattatcggtgttgacagt |
319 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
18570997 |
cattttctcaaattattatcggtgttgacagt |
18570966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 288 - 317
Target Start/End: Original strand, 18919056 - 18919085
Alignment:
| Q |
288 |
cattttctcaaattattatcggtgttgaca |
317 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
18919056 |
cattttctcaaattattatcggtgttgaca |
18919085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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