View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5218-Insertion-6 (Length: 710)
Name: NF5218-Insertion-6
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218-Insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 299 - 670
Target Start/End: Original strand, 18029001 - 18029373
Alignment:
| Q |
299 |
caactgaaaaactcatcaat-agatatatttaattttatacagatctcagacctaatgaagaacatggagaagaattggccatctctgagctgtccaagt |
397 |
Q |
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| T |
18029001 |
caactgaaaaactaatcaatgagttatatttaattttatatagatctcagacctaatgaagaacatggagaagaattggccatctctgagctgtccaagt |
18029100 |
T |
|
| Q |
398 |
agcaatggttttagactctggtcacatgaatgggagaaacatggtacatgtgcagaatctgagcttgatccacatgactactttgaaactgctcttaaac |
497 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
18029101 |
agcaatggttttagattctggtcacatgaatgggagaaacatggtacatgtgcagaatctgagcttgatcaacatgagtactttgaaactgctcttaaac |
18029200 |
T |
|
| Q |
498 |
ttaaggagaaagcaaacctccttcggagcctcacgaatgcaggtaacaagacatgattttgaagcatctcatatgctatgaagcgctgacacaaacactg |
597 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
18029201 |
ttaaggagaaagcaaacctccttcagagcctcacgaatgcaggtaacaagacatgattttgaagcatctcatatgctatgaagcgctaacacaaacattg |
18029300 |
T |
|
| Q |
598 |
acatagcacacgacacgtagacacgactaataatattagcaaatcgaagtaattgaatgtagtcacttgtatc |
670 |
Q |
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||||| |||||||||||||||||| | |||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
18029301 |
acataacacacgacacgtagacaccaataataatattagaaaattgaagtaattgaatgtagtcacttgtatc |
18029373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 8 - 201
Target Start/End: Original strand, 18028710 - 18028903
Alignment:
| Q |
8 |
gagactaatttacttgttgtgttgtttgtaaatgtagtggccaggagcatactgtgacacaaagcaaagctgctgttatccgaaaaccggaaaaccgacg |
107 |
Q |
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| T |
18028710 |
gagactaatttacttgttgtgttgtttgtaaatgtagtggccaggagcatactgtgacacaaagcagagctgctgttatccgaaaaccggaaaaccgacg |
18028809 |
T |
|
| Q |
108 |
gcagattttggcattcatggactgtggcctaactacaatgatggatcatggccctcaaactgtgatcctgatagtacctttgataaacctcagg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
18028810 |
gcagattttggcattcatggactgtggcctaactacaacgatggatcatggccctcaaactgtgatccagatagtacctttgataaatctcagg |
18028903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 43 - 170
Target Start/End: Original strand, 18034551 - 18034678
Alignment:
| Q |
43 |
agtggccaggagcatactgtgacacaaagcaaagctgctgttatccgaaaaccggaaaaccgacggcagattttggcattcatggactgtggcctaacta |
142 |
Q |
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|||||||||||||| ||||||| ||||||| |||||||||| ||||||||||||||||||||| ||||||||| |||| |||||| ||||||||| |
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| T |
18034551 |
agtggccaggagcaatctgtgactcaaagcagagctgctgttttccgaaaaccggaaaaccgacagcagattttaccattgctggacttaggcctaactt |
18034650 |
T |
|
| Q |
143 |
caatgatggatcatggccctcaaactgt |
170 |
Q |
| |
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| T |
18034651 |
caatgatggatcatctccctcaaactgt |
18034678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 334 - 550
Target Start/End: Original strand, 18034834 - 18035050
Alignment:
| Q |
334 |
tatacagatctcagacctaatgaagaacatggagaagaattggccatctctgagctgtccaagtagcaatggttttagactctggtcacatgaatgggag |
433 |
Q |
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|||| ||||||||||||| || ||| |||| || |||||||||||| ||||||| || ||| | |||||| ||||||| ||||||||||||||| | |
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| T |
18034834 |
tatatagatctcagacctcattaagggtttggaaaataattggccatctttgagctgccctagtggaaatggtattagactttggtcacatgaatggatg |
18034933 |
T |
|
| Q |
434 |
aaacatggtacatgtgcagaatctgagcttgatccacatgactactttgaaactgctcttaaacttaaggagaaagcaaacctccttcggagcctcacga |
533 |
Q |
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||||||||||| ||| |||||||| ||||| || ||||||||||||| |||| ||||| ||||| ||| | ||| | || || || | || ||| | || |
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| T |
18034934 |
aaacatggtacctgttcagaatctaagcttactcaacatgactactttcaaacagctctcaaactcaagaaaaaatcgaatcttctccagatccttaaga |
18035033 |
T |
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| Q |
534 |
atgcaggtaacaagaca |
550 |
Q |
| |
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||||||||||||||||| |
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| T |
18035034 |
atgcaggtaacaagaca |
18035050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 18052266 - 18052339
Alignment:
| Q |
43 |
agtggccaggagcatactgtgacacaaagcaaagctgctgttatccgaaaaccggaaaaccgacggcagatttt |
116 |
Q |
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| T |
18052266 |
agtggccaggatcatactgtgactcaaaactaggctgctgttatccgaaaaccggtaaaccggcggcagatttt |
18052339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 416 - 559
Target Start/End: Original strand, 18052596 - 18052739
Alignment:
| Q |
416 |
tggtcacatgaatgggagaaacatggtacatgtgcagaatctgagcttgatccacatgactactttgaaactgctcttaaacttaaggagaaagcaaacc |
515 |
Q |
| |
|
||||||||||||||| ||||||||| |||||| |||||||| ||||| || ||||||||||||| |||| ||||| ||||| ||| | ||| |||| |
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| T |
18052596 |
tggtcacatgaatggatgaaacatggcacatgttcagaatctaagctttctcaacatgactactttcaaacagctctcaaactcaagaaaaaactgaacc |
18052695 |
T |
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| Q |
516 |
tccttcggagcctcacgaatgcaggtaacaagacatgattttga |
559 |
Q |
| |
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| |||| | || | | | |||||||||||||||||||||||| |
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| T |
18052696 |
ttcttcaaatgcttaaggacgcaggtaacaagacatgattttga |
18052739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 416 - 498
Target Start/End: Original strand, 18047613 - 18047695
Alignment:
| Q |
416 |
tggtcacatgaatgggagaaacatggtacatgtgcagaatctgagcttgatccacatgactactttgaaactgctcttaaact |
498 |
Q |
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||||||||||||||| |||||||||||| ||| |||||||| ||||| || ||||||||||||| |||| ||||| ||||| |
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| T |
18047613 |
tggtcacatgaatggatgaaacatggtacctgttcagaatctaagcttactcaacatgactactttcaaacggctctcaaact |
18047695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 43 - 90
Target Start/End: Original strand, 18047112 - 18047159
Alignment:
| Q |
43 |
agtggccaggagcatactgtgacacaaagcaaagctgctgttatccga |
90 |
Q |
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| T |
18047112 |
agtggccaggagcatactgtgactcaaaccagagctgctgttatccga |
18047159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 414 - 456
Target Start/End: Original strand, 17999656 - 17999698
Alignment:
| Q |
414 |
tctggtcacatgaatgggagaaacatggtacatgtgcagaatc |
456 |
Q |
| |
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||||| ||||||||||||||||||||||||| ||| ||||||| |
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| T |
17999656 |
tctggacacatgaatgggagaaacatggtacttgttcagaatc |
17999698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 339 - 442
Target Start/End: Original strand, 3616796 - 3616899
Alignment:
| Q |
339 |
agatctcagacctaatgaagaacatggagaagaattggccatctctgagctgtccaagtagcaatggttttagactctggtcacatgaatgggagaaaca |
438 |
Q |
| |
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|||||| ||||||||| ||||||||| |||||||||| |||||| ||||||||||||| |||||| |||||||| ||| ||||||||||||||||||||| |
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| T |
3616796 |
agatcttagacctaattaagaacatgtagaagaattgaccatctttgagctgtccaagcagcaattgttttagattctagtcacatgaatgggagaaaca |
3616895 |
T |
|
| Q |
439 |
tggt |
442 |
Q |
| |
|
|||| |
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| T |
3616896 |
tggt |
3616899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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