View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5218_high_12 (Length: 376)
Name: NF5218_high_12
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218_high_12 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 24493849 - 24494224
Alignment:
| Q |
1 |
tcatcaacgtcctggactagattatgatcaaacattcagtcctgtgattaagccttcaacagttcggttggttcttacattggccattcaacaacgctgg |
100 |
Q |
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| T |
24493849 |
tcatcaacgtcctggactagattatgatcaaacattcagtcctgtgattaagccttcaacagttcggttggttcttacattggccattcaacaacgctgg |
24493948 |
T |
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| Q |
101 |
cacattcaccagttggatgtaaacaatgcgttcttgcatggtaagctttcagaaactgtatacatgcaacaaccaccgggatttcatcatccagattacc |
200 |
Q |
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| T |
24493949 |
cacattcaccagttggatgtaaacaatgcgttcttgcatggtaagctttcagaaattgtatacatgcaacaaccaccgggatttcatcatccagattacc |
24494048 |
T |
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| Q |
201 |
ctaatcatgtttgtcggctaaagaaatctttgtatggcctaaaacaggcccctcgggcatggtttaacaccttacattctttcttactctcctatgggtt |
300 |
Q |
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| T |
24494049 |
ctaatcatgtttgtcggctaaagaaatctttgtatggcctaaaacaggcccctcgggcatggtttaacaccttacattctttcttactctcctatgggtt |
24494148 |
T |
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| Q |
301 |
tgtcaattccaaatctgatccatcattattcatctatctcaaagttgatgataaactctacactttggaatatgtt |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||| |
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| T |
24494149 |
tgtcaattccaaatctgatccatcattattcatctatctcaaaggtgatgtcaaactctacactttggtatatgtt |
24494224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 93199 - 93574
Alignment:
| Q |
1 |
tcatcaacgtcctggactagattatgatcaaacattcagtcctgtgattaagccttcaacagttcggttggttcttacattggccattcaacaacgctgg |
100 |
Q |
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||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
93199 |
tcatcaatgtcatggactagattatgatcaaacattcagtcctgcgattaagccttcaacagttcggttggttcttacattggccattcaacaacgctgg |
93298 |
T |
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| Q |
101 |
cacattcaccagttggatgtaaacaatgcgttcttgcatggtaagctttcagaaactgtatacatgcaacaaccaccgggatttcatcatccagattacc |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
93299 |
cacattcaccagttggatgtaaacaatgtgttcttgcatggtaagctttcagaaactgtatacatgcaacaaccaccaggatttcatcatctagattacc |
93398 |
T |
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| Q |
201 |
ctaatcatgtttgtcggctaaagaaatctttgtatggcctaaaacaggcccctcgggcatggtttaacaccttacattctttcttactctcctatgggtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
93399 |
ctaatcatgtttgtcggctaaagaaatctttgtatggcctaaaacaggcccctcgggcatggttcaacaccttacattctttcttactctcctatggatt |
93498 |
T |
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| Q |
301 |
tgtcaattccaaatctgatccatcattattcatctatctcaaagttgatgataaactctacactttggaatatgtt |
376 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||| |
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| T |
93499 |
tgtcaattcaaaatctgatccatcattattcatctatctcaaaggtgatgtcaaactctacactttggtatatgtt |
93574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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