View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5218_high_16 (Length: 353)
Name: NF5218_high_16
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 11 - 333
Target Start/End: Complemental strand, 10593630 - 10593308
Alignment:
| Q |
11 |
cataggtaacagctagacccacaatgccttcaaagatcagaaaaattacactgagacacaattatgcccaacttttcattacacaggatgagtaagtttt |
110 |
Q |
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| T |
10593630 |
cataggtaacagctagacccacaatgccttaaaagatcaaaaaaattacactgagacacaattatgcccaacttttcattacacaggatgagtaagtttt |
10593531 |
T |
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| Q |
111 |
gatcgatatatgattccaggtggaatcgatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccat |
210 |
Q |
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| T |
10593530 |
gatcgatatatgattccaggtggaatcgatatcaagaatatcaaagtaaaggaaaatgtgatcaaagacgacatgtctaaactgaaacatatataaccat |
10593431 |
T |
|
| Q |
211 |
tccgtagcagcagcaatgttcaactttggccgagaatacctattaatcagtttcatatttgtttcatgaaatcttgacagttgatcaaagcttctaatta |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10593430 |
tccgtagcagcagcaatgttcaactttggccgagaatacccattaatcagtttcatatttgtttcatgaaatcttgacagttgatcaaagcttctaatta |
10593331 |
T |
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| Q |
311 |
acatgaaatctttacgaactata |
333 |
Q |
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| T |
10593330 |
acatgaaatctttacgaactata |
10593308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 133; Significance: 4e-69; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 119 - 308
Target Start/End: Complemental strand, 14375686 - 14375501
Alignment:
| Q |
119 |
tatgattccaggtggaatcgatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccattccgtagc |
218 |
Q |
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| T |
14375686 |
tatgattccaggtggaatcgatatcaagaatatcaaagaaaaggcaaatgtgatcaaagacaacatatctaaacggaaacat----aaccattccatagc |
14375591 |
T |
|
| Q |
219 |
agcagcaatgttcaactttggccgagaatacctattaatcagtttcatatttgtttcatgaaatcttgacagttgatcaaagcttctaat |
308 |
Q |
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| T |
14375590 |
agcagcaatgttgaactttggccgagaatacccatcaatcagtttcatatttgtttcatgaaatcttgactgtttatcaaagcttctaat |
14375501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 119 - 308
Target Start/End: Original strand, 41449536 - 41449721
Alignment:
| Q |
119 |
tatgattccaggtggaatcgatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccattccgtagc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||| ||||| ||||| |||| ||||| | ||| | ||||||||||| |||| |
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| T |
41449536 |
tatgattccaggtggaatcgatatcaagaatatcaaggaaaaggcaaacgtgatggaagacaacatatctaagcggaagc----ataaccattccatagc |
41449631 |
T |
|
| Q |
219 |
agcagcaatgttcaactttggccgagaatacctattaatcagtttcatatttgtttcatgaaatcttgacagttgatcaaagcttctaat |
308 |
Q |
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| T |
41449632 |
agcagcaatattgaactttggccgagaatacccatcagtcagtttcatgtttgtttcatgaaatctagactgttgatcaaagcttctaat |
41449721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 119 - 308
Target Start/End: Original strand, 41436323 - 41436508
Alignment:
| Q |
119 |
tatgattccaggtggaatcgatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccattccgtagc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||| |||| ||||| | ||| | ||||||||||| |||| |
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| T |
41436323 |
tatgattccaggtggaatcgatatcaagaatatcaaggaaaaggcaaatgtgatggaagacaacatatctaagcggaagc----ataaccattccatagc |
41436418 |
T |
|
| Q |
219 |
agcagcaatgttcaactttggccgagaatacctattaatcagtttcatatttgtttcatgaaatcttgacagttgatcaaagcttctaat |
308 |
Q |
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|||| |||| || ||||||||||||||||||| || | |||||||||| |||||||||| |||||| ||| ||||||||||||||||||| |
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| T |
41436419 |
agcaacaatattgaactttggccgagaatacccatcagtcagtttcatgtttgtttcataaaatctagactgttgatcaaagcttctaat |
41436508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 120 - 308
Target Start/End: Original strand, 14238453 - 14238637
Alignment:
| Q |
120 |
atgattccaggtggaatcgatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccattccgtagca |
219 |
Q |
| |
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|||||||||||||||||||||||||||||| ||| | |||||||||| |||| ||||| |||| ||||| | ||| || ||||||||| ||||| |
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| T |
14238453 |
atgattccaggtggaatcgatatcaagaatgccaaggaaaaggcaaatatgatggaagacaacatatctaagcgtaaagat----aaccattccatagca |
14238548 |
T |
|
| Q |
220 |
gcagcaatgttcaactttggccgagaatacctattaatcagtttcatatttgtttcatgaaatcttgacagttgatcaaagcttctaat |
308 |
Q |
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|||| |||||| || |||||||||||||||| || | |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14238549 |
gcagaaatgttgaaatttggccgagaatacccatcagtcagtttcatatttgtttcatgaaatcttgactgttgatcaaagcttctaat |
14238637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 14376964 - 14376914
Alignment:
| Q |
11 |
cataggtaacagctagacccacaatgccttcaaagatcagaaaaattacac |
61 |
Q |
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||||||||||||||||||| ||||||||||||| ||||||||||| |||| |
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| T |
14376964 |
cataggtaacagctagaccagcaatgccttcaaaaatcagaaaaatgacac |
14376914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 41436186 - 41436230
Alignment:
| Q |
11 |
cataggtaacagctagacccacaatgccttcaaagatcagaaaaa |
55 |
Q |
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||||||||||||||||||| ||||||||||||| ||||| |||| |
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| T |
41436186 |
cataggtaacagctagaccagcaatgccttcaaaaatcaggaaaa |
41436230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 119 - 274
Target Start/End: Original strand, 32119103 - 32119255
Alignment:
| Q |
119 |
tatgattccaggtggaatc-gatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccattccgtag |
217 |
Q |
| |
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|||||||||||||||| || ||||||||||||||||||| |||| ||||| ||||||||||| |||| |||| || || || ||||||||||| ||| |
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| T |
32119103 |
tatgattccaggtggattctgatatcaagaatatcaaagaaaagacaaatctgatcaaagacaacatatctatacggagac----ataaccattccatag |
32119198 |
T |
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| Q |
218 |
cagcagcaatgttcaactttggccgagaatacctattaatcagtttcatatttgttt |
274 |
Q |
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||||||||||||| ||||||||| |||||| | ||||||||| ||||||| ||||| |
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| T |
32119199 |
cagcagcaatgttgaactttggcaaagaatatccattaatcaggttcatatatgttt |
32119255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 32118988 - 32119075
Alignment:
| Q |
40 |
tcaaagatcagaaaaattacact---gagacacaattatgcccaacttttcattacacaggatgagtaagttttgatcgatatatgat |
124 |
Q |
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||||| ||||||||||| ||||| |||| ||||||||||| ||||| ||| |||||| | |||||| ||||||| |||||||||| |
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| T |
32118988 |
tcaaaaatcagaaaaatgacactaaggagagacaattatgcctaacttctcaatacacaagcagagtaaattttgattgatatatgat |
32119075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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