View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5218_high_20 (Length: 317)
Name: NF5218_high_20
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 8e-61; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 1329170 - 1328982
Alignment:
| Q |
1 |
gaaaagagagaatagtatggaaatagaaatggtaaaagactaaagattgaatcatatgctacatgtttctttttcataca--tcataagtcataataaaa |
98 |
Q |
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| T |
1329170 |
gaaaagagagaagagcgtggaaatagaaatggtaaa-gacttaagaacaaatcatatgctacatgtttctttttcatacacttcatacgtcataataaac |
1329072 |
T |
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| Q |
99 |
taaaaaa-tctaacagcatgaaagctttaaacttgggatgcaaatacaactaattcttaattcggccaattggaagaagatttttcttat |
187 |
Q |
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| T |
1329071 |
taaaaaaatctaacagtatgaaagctttaaacttgggatccaaatacaactaattcttaattcggccaattggaagaagatttttcttat |
1328982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 186 - 295
Target Start/End: Complemental strand, 1328914 - 1328806
Alignment:
| Q |
186 |
atcaaaataggctaatccattgtcattttatccaaattccatattatgagtgactgtatgattgtcaagaataatgtgtttatgtaaacatcgatgcagg |
285 |
Q |
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| T |
1328914 |
atcaaaacaggctaatccattgtcattt-atccaaattccatataacgagtgactgtatgattgtcaagaataatatgtttatgtaaacatttatgcagg |
1328816 |
T |
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| Q |
286 |
tgaatacaat |
295 |
Q |
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| T |
1328815 |
tgaatacaat |
1328806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 186 - 295
Target Start/End: Complemental strand, 44187578 - 44187470
Alignment:
| Q |
186 |
atcaaaataggctaatccattgtcattttatccaaattccatattatgagtgactgtatgattgtcaagaataatgtgtttatgtaaacatcgatgcagg |
285 |
Q |
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| T |
44187578 |
atcaaaacagtctagtccgttgtcattt-atccaaatttcataatatgagtaactatatggttgtcaagaataatatgtttatgtaaaaattgttgcaag |
44187480 |
T |
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| Q |
286 |
tgaatacaat |
295 |
Q |
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| T |
44187479 |
tgaatacaat |
44187470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 182
Target Start/End: Complemental strand, 44187717 - 44187651
Alignment:
| Q |
116 |
tgaaagctttaaacttgggatgcaaatacaactaattcttaattcggccaattggaagaagattttt |
182 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||||||| ||||| |||| ||||||||| |
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| T |
44187717 |
tgaaagctttaaacttggaatgcaagtacaactaattcttaattcagccaacaggaataagattttt |
44187651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 276
Target Start/End: Original strand, 19161355 - 19161418
Alignment:
| Q |
213 |
ttatccaaattccatattatgagtgactgtatgattgtcaagaataatgtgtttatgtaaacat |
276 |
Q |
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| T |
19161355 |
ttatccaaattccatatttggagtgactatatcattgtcaagaatattatgttcatgcaaacat |
19161418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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