View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5218_high_31 (Length: 251)
Name: NF5218_high_31
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218_high_31 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 47652187 - 47652426
Alignment:
| Q |
14 |
atatcttagaaaataagaagactcagacactaatatagtttgctgtcacattgacaatttgtgatcaagaaatcggactgattgtaataataataagtct |
113 |
Q |
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| T |
47652187 |
atatcttagaaaataagaagactcagacactaatatagttagctgtcacattgacaatttgtgatcaagaaatcggactgattgtaataataataagtct |
47652286 |
T |
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| Q |
114 |
tgtgattgtt--attgataatcaaagataatatattaattcaaaaaagtataaaaggtactccaatgataatacatataaaatgatatcatcactaatta |
211 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
47652287 |
tgtgattgttttattgataatcaaagataatatattaattcaaaaaagtataaaaggtactccaatgataatacatataaaatgatataatcactaatta |
47652386 |
T |
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| Q |
212 |
aagtaaatataaacaattataagtgatgtgatttacttct |
251 |
Q |
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| T |
47652387 |
aagtaaatataaacaataataagtgatgtgatttacttct |
47652426 |
T |
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