View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5218_high_33 (Length: 250)
Name: NF5218_high_33
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218_high_33 |
 | |
|
| [»] scaffold0458 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 44465095 - 44464860
Alignment:
| Q |
1 |
caacaaaggatttaaaaacgggcgtttgccgcttaagatgacgagcaaaacacgcgcgatttatgagtcagttagtcggagaaagcttcttcagagtaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44465095 |
caacaaaggatttaaaaacgggcgtttgccgcttaagatgacgagcaaaacacgcgcgatttatgagtcagttagtcggagaaagcttcttcagagtaat |
44464996 |
T |
|
| Q |
101 |
caagttggagaggatgttgtggtgagagatattgtgacggttagtcaagatggaagtggaaactttaccacgattaatgatgctattgctgcagctccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44464995 |
caagttggagaggatgttgtggtgagagatattgtgacggttagtcaagatggaagtggaaactttaccacgattaatgatgctattgctgcagctccaa |
44464896 |
T |
|
| Q |
201 |
ataaatctgtttctagtgatggatattttttgatct |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
44464895 |
ataaatctgtttctagtgatggatattttttgatct |
44464860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 44489338 - 44489274
Alignment:
| Q |
140 |
gttagtcaagatggaagtggaaactttaccacgattaatgatgctattgctgcagctccaaataa |
204 |
Q |
| |
|
|||||||||||||| |||||||||||||| || || ||||||||| ||||||| ||||||||||| |
|
|
| T |
44489338 |
gttagtcaagatgggagtggaaactttacaactatcaatgatgctgttgctgctgctccaaataa |
44489274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 44476165 - 44476110
Alignment:
| Q |
131 |
attgtgacggttagtcaagatggaagtggaaactttaccacgattaatgatgctat |
186 |
Q |
| |
|
||||||| |||| |||||||||||||||||| ||||| || |||||||||||||| |
|
|
| T |
44476165 |
attgtgattgttaatcaagatggaagtggaaattttacaacaattaatgatgctat |
44476110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 225
Target Start/End: Complemental strand, 24061911 - 24061826
Alignment:
| Q |
140 |
gttagtcaagatggaagtggaaactttaccacgattaatgatgctattgctgcagctccaaataaatctgtttctagtgatggata |
225 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || |||||||| || ||||| || |||||||| | ||| ||||||||||||| |
|
|
| T |
24061911 |
gttagtcaagatggaagtggaaacttcaccactatcaatgatgcaatagctgctgcaccaaataacacggttgctagtgatggata |
24061826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 225
Target Start/End: Original strand, 39450329 - 39450439
Alignment:
| Q |
115 |
tgttgtggtgagagatattgtgacggttagtcaagatggaagtggaaactttaccacgattaatgatgctattgctgcagctccaaataaatctgtttct |
214 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||||||||||||||||||||||| | || ||||| || | ||||| || |||||||| | ||| || |
|
|
| T |
39450329 |
tgttgtggtgagtgatgttgtcgttgttagtcaagatggaagtggaaactttaccgcaatcaatgacgccgtagctgctgcaccaaataacacggttgct |
39450428 |
T |
|
| Q |
215 |
agtgatggata |
225 |
Q |
| |
|
||||||||||| |
|
|
| T |
39450429 |
agtgatggata |
39450439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 225
Target Start/End: Original strand, 39471201 - 39471311
Alignment:
| Q |
115 |
tgttgtggtgagagatattgtgacggttagtcaagatggaagtggaaactttaccacgattaatgatgctattgctgcagctccaaataaatctgtttct |
214 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||||||||||||||||||||||| | || ||||| || | ||||| || |||||||| | ||| || |
|
|
| T |
39471201 |
tgttgtggtgagtgatgttgtcgttgttagtcaagatggaagtggaaactttaccgcaatcaatgacgccgtagctgctgcaccaaataacacggttgct |
39471300 |
T |
|
| Q |
215 |
agtgatggata |
225 |
Q |
| |
|
||||||||||| |
|
|
| T |
39471301 |
agtgatggata |
39471311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0458 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0458
Description:
Target: scaffold0458; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 225
Target Start/End: Complemental strand, 3292 - 3182
Alignment:
| Q |
115 |
tgttgtggtgagagatattgtgacggttagtcaagatggaagtggaaactttaccacgattaatgatgctattgctgcagctccaaataaatctgtttct |
214 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||||||||||||||||||||||| | || ||||| || | ||||| || |||||||| | ||| || |
|
|
| T |
3292 |
tgttgtggtgagtgatgttgtcgttgttagtcaagatggaagtggaaactttaccgcaatcaatgacgccgtagctgctgcaccaaataacacggttgct |
3193 |
T |
|
| Q |
215 |
agtgatggata |
225 |
Q |
| |
|
||||||||||| |
|
|
| T |
3192 |
agtgatggata |
3182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 186
Target Start/End: Original strand, 19475227 - 19475265
Alignment:
| Q |
148 |
agatggaagtggaaactttaccacgattaatgatgctat |
186 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
19475227 |
agatggaagtggaaactttagcactattaatgatgctat |
19475265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University