View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5218_high_38 (Length: 242)
Name: NF5218_high_38
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 96 - 207
Target Start/End: Complemental strand, 39146594 - 39146483
Alignment:
| Q |
96 |
tttcaattcacacacccgttcaaaatcttaagattcgatgtttactcttcaatttcccaccaattccggctaaggttccaacactatttagttctcgtca |
195 |
Q |
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| T |
39146594 |
tttcaattcacaaatccgttcaaaatcttaagatttgatgtttactcttcaatttcacaccaattccagctaaggctccaacactgtttaattctcctcg |
39146495 |
T |
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| Q |
196 |
taaaaattaacc |
207 |
Q |
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| T |
39146494 |
taaaatttaacc |
39146483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 39146637 - 39146588
Alignment:
| Q |
30 |
ctagtctagtctagtatataaacactaatagttggtgctaatttttcaat |
79 |
Q |
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| T |
39146637 |
ctagtctagtctagtatataaacaccaatagttggtgctaatatttcaat |
39146588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 39146770 - 39146729
Alignment:
| Q |
1 |
ccctaaaggcatacccttaaaatccacttctagtctagtcta |
42 |
Q |
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| T |
39146770 |
ccctaaaggcatacccttaaaatccacttctagtctagtcta |
39146729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 161
Target Start/End: Original strand, 10480957 - 10481079
Alignment:
| Q |
39 |
tctagtatataaacactaatagttggtgctaatttttcaatgccggacatcgacaattttcaattcacacacccgttcaaaatcttaagattcgatgttt |
138 |
Q |
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| T |
10480957 |
tctactatataaacactaatagttggtgctaattttctgatgcaggactttcactattttcaattgacacagtagtttaaagttttaagactcggtgtct |
10481056 |
T |
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| Q |
139 |
actcttcaatttcccaccaattc |
161 |
Q |
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| T |
10481057 |
cctcttcaatttcccatcaattc |
10481079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 5171046 - 5171090
Alignment:
| Q |
134 |
tgtttactcttcaatttcccaccaattccggctaaggttccaaca |
178 |
Q |
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| T |
5171046 |
tgtttactcttcaatttcccaccaaatccagctaaggttccaaca |
5171090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 9693726 - 9693808
Alignment:
| Q |
95 |
ttttcaattcacacacccgttcaaaatcttaagattcgatgtttactcttcaatttcccaccaattccggctaaggttccaaca |
178 |
Q |
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| T |
9693726 |
ttttcaattcacacactagttcaaaatctaaagacttg-tgtttactcttcaatttcctactaattccatctaaagttccaaca |
9693808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 23380655 - 23380721
Alignment:
| Q |
114 |
ttcaaaatcttaagattcgatgtttactcttcaatttcccaccaattccggctaaggttccaacact |
180 |
Q |
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| T |
23380655 |
ttcaaaatcttaagacttagtgtgtactcttcaatttcccgccaattccaactaagtttccaacact |
23380721 |
T |
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