View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5218_high_4 (Length: 480)

Name: NF5218_high_4
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5218_high_4
NF5218_high_4
[»] chr1 (19 HSPs)
chr1 (69-244)||(40821439-40821614)
chr1 (307-414)||(40821677-40821782)
chr1 (307-392)||(6464459-6464545)
chr1 (413-458)||(40821799-40821844)
chr1 (307-376)||(50977551-50977620)
chr1 (322-392)||(45709915-45709986)
chr1 (307-376)||(13055843-13055912)
chr1 (322-389)||(11561709-11561777)
chr1 (413-463)||(6464582-6464632)
chr1 (413-463)||(12468187-12468237)
chr1 (413-463)||(45710023-45710073)
chr1 (413-463)||(50977441-50977491)
chr1 (416-463)||(1199804-1199851)
chr1 (416-463)||(35569304-35569351)
chr1 (413-463)||(11051412-11051462)
chr1 (413-463)||(20800379-20800429)
chr1 (412-458)||(36205164-36205210)
chr1 (322-379)||(25229859-25229916)
chr1 (92-153)||(45709445-45709501)
[»] chr5 (9 HSPs)
chr5 (307-414)||(2430461-2430567)
chr5 (307-392)||(33954086-33954172)
chr5 (413-463)||(2430394-2430444)
chr5 (322-376)||(28869709-28869763)
chr5 (413-463)||(41834856-41834906)
chr5 (413-458)||(33954004-33954049)
chr5 (416-463)||(22482156-22482203)
chr5 (413-463)||(3060320-3060370)
chr5 (416-457)||(32030683-32030724)
[»] chr3 (18 HSPs)
chr3 (307-392)||(30811719-30811805)
chr3 (308-392)||(35425162-35425247)
chr3 (307-392)||(8424917-8425003)
chr3 (322-392)||(44939602-44939673)
chr3 (413-463)||(35425284-35425334)
chr3 (317-379)||(42318161-42318223)
chr3 (416-463)||(20813099-20813146)
chr3 (413-463)||(30811632-30811682)
chr3 (307-376)||(15511586-15511655)
chr3 (413-457)||(8424836-8424880)
chr3 (323-379)||(38125649-38125705)
chr3 (416-463)||(23496277-23496324)
chr3 (336-378)||(10334006-10334048)
chr3 (413-463)||(10853368-10853418)
chr3 (421-463)||(16246195-16246237)
chr3 (413-463)||(42318280-42318330)
chr3 (413-463)||(48189542-48189592)
chr3 (413-463)||(53179799-53179849)
[»] scaffold0007 (2 HSPs)
scaffold0007 (307-392)||(29310-29396)
scaffold0007 (413-463)||(29223-29273)
[»] chr2 (6 HSPs)
chr2 (307-392)||(14820999-14821085)
chr2 (416-463)||(5916340-5916387)
chr2 (416-463)||(36312239-36312286)
chr2 (413-463)||(7472772-7472822)
chr2 (413-463)||(8170272-8170322)
chr2 (413-463)||(14821122-14821172)
[»] chr8 (3 HSPs)
chr8 (307-392)||(36121721-36121807)
chr8 (413-463)||(6399209-6399259)
chr8 (412-454)||(16915018-16915060)
[»] chr4 (16 HSPs)
chr4 (309-392)||(14072318-14072401)
chr4 (322-392)||(54152872-54152943)
chr4 (307-392)||(32238248-32238334)
chr4 (413-463)||(14072438-14072488)
chr4 (317-379)||(30841948-30842010)
chr4 (416-463)||(16566243-16566290)
chr4 (413-457)||(54152980-54153024)
chr4 (332-379)||(15603191-15603238)
chr4 (332-379)||(48407905-48407952)
chr4 (413-463)||(2175248-2175298)
chr4 (413-463)||(9889435-9889485)
chr4 (413-463)||(19592332-19592382)
chr4 (413-463)||(32238159-32238209)
chr4 (413-458)||(30842067-30842112)
chr4 (413-458)||(48407803-48407848)
chr4 (322-389)||(31520566-31520634)
[»] chr6 (4 HSPs)
chr6 (322-392)||(6208250-6208321)
chr6 (416-463)||(16548092-16548139)
chr6 (419-463)||(17830099-17830143)
chr6 (413-463)||(6208163-6208213)
[»] chr7 (11 HSPs)
chr7 (322-378)||(47301743-47301799)
chr7 (412-463)||(43738027-43738078)
chr7 (413-463)||(47301645-47301695)
chr7 (307-376)||(34366179-34366248)
chr7 (416-463)||(38230042-38230089)
chr7 (420-463)||(48134558-48134601)
chr7 (413-463)||(9456076-9456126)
chr7 (416-458)||(10372051-10372093)
chr7 (413-463)||(47021890-47021940)
chr7 (413-463)||(47217629-47217679)
chr7 (413-453)||(3375461-3375501)
[»] scaffold0369 (1 HSPs)
scaffold0369 (413-463)||(8399-8449)
[»] scaffold0381 (1 HSPs)
scaffold0381 (413-463)||(9061-9111)
[»] scaffold0394 (1 HSPs)
scaffold0394 (416-453)||(5942-5979)


Alignment Details
Target: chr1 (Bit Score: 140; Significance: 4e-73; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 69 - 244
Target Start/End: Original strand, 40821439 - 40821614
Alignment:
Q  69 atatatgttcttaatggggagggatggagaaatggtacgagagaaaaatagtgtaatgaaataggaaagaagaaaggttagaagagttagattagtgaga 168  Q
    ||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||    
T  40821439 atatatgttcttaatggtgagtgatggagaaatggtatgagagaaaaatagtgaaatgaaatggggaagaagaaaggttagaagagttagattagtgaga 40821538  T
Q  169 gatggagaaatagatggaaatgtgaagaagtgtaatgaagcttatggagaaatagtatggaaacatgagggagtat 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||    
T  40821539 gatggagaaatagatggaaatgtgaagaagtgtaatgaagcttatggaaaaatagtagggaaacgtgagggagtat 40821614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 307 - 414
Target Start/End: Original strand, 40821677 - 40821782
Alignment:
Q  307 ctcttataatctgaaattatttttcaataaatttgtgaaccaataaaaaaccatttataattttagataagttaaataattatttttgaagtaaaaatgg 406  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||  || |||||||||    
T  40821677 ctcttataatctgaaattatttttaaataaatttgtgaaccaataaaaattcatttataattttagataagttaaataattatttt--aactaaaaatgg 40821774  T
Q  407 gatattta 414  Q
    ||||||||    
T  40821775 gatattta 40821782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 307 - 392
Target Start/End: Original strand, 6464459 - 6464545
Alignment:
Q  307 ctcttataatctgaaattatttttcaataaatttgtgaaccaataaaaaaccatttataattttagataag-ttaaataattatttt 392  Q
    |||||||||| ||||||||||||| ||||||||||||||||||| |||| |||||||| |||||||||||| |||||||||||||||    
T  6464459 ctcttataatatgaaattatttttaaataaatttgtgaaccaatcaaaatccatttatgattttagataagtttaaataattatttt 6464545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 413 - 458
Target Start/End: Original strand, 40821799 - 40821844
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatc 458  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  40821799 taatttagtcattgcacattcaaactcaattttgattcaaattatc 40821844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 376
Target Start/End: Complemental strand, 50977620 - 50977551
Alignment:
Q  307 ctcttataatctgaaattatttttcaataaatttgtgaaccaataaaaaaccatttataattttagataa 376  Q
    |||| |||| |||| ||||||||  |||||||||||||||||||||||| |||||||| |||||||||||    
T  50977620 ctctcataaactgatattattttaaaataaatttgtgaaccaataaaaatccatttatgattttagataa 50977551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 392
Target Start/End: Original strand, 45709915 - 45709986
Alignment:
Q  322 attatttttcaataaatttgtgaaccaataaaaaaccatttataattttagat-aagttaaataattatttt 392  Q
    ||||||||| ||| ||||||||||||||| |||| |||||||| ||||||||| || |||||||||||||||    
T  45709915 attatttttaaatcaatttgtgaaccaatcaaaatccatttatgattttagataaatttaaataattatttt 45709986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 376
Target Start/End: Original strand, 13055843 - 13055912
Alignment:
Q  307 ctcttataatctgaaattatttttcaataaatttgtgaaccaataaaaaaccatttataattttagataa 376  Q
    |||| |||| |||| ||| ||||  |||||||||||||||||||||||| |||||||| |||||||||||    
T  13055843 ctctcataaactgacattgttttaaaataaatttgtgaaccaataaaaatccatttatgattttagataa 13055912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 389
Target Start/End: Original strand, 11561709 - 11561777
Alignment:
Q  322 attatttttcaataaatttgtgaaccaataaaaaaccatttataattttagataag-ttaaataattat 389  Q
    ||||||||  |||||||||||||| ||||||||| ||| |||| |||||||||||| ||||||||||||    
T  11561709 attattttaaaataaatttgtgaagcaataaaaatccaattatgattttagataagtttaaataattat 11561777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 463
Target Start/End: Original strand, 6464582 - 6464632
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    |||||||||||||  ||||||||| ||||||||||||||||||||| ||||    
T  6464582 taatttagtcattagacattcaaaatcaattttgattcaaactatccaaac 6464632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 463
Target Start/End: Original strand, 12468187 - 12468237
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    |||||| ||||||| ||||||||| ||||||||||||||||||||| ||||    
T  12468187 taatttggtcattgtacattcaaaatcaattttgattcaaactatccaaac 12468237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 463
Target Start/End: Original strand, 45710023 - 45710073
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    |||||||||||||  ||||||||| ||||||||||||||||||||| ||||    
T  45710023 taatttagtcattagacattcaaaatcaattttgattcaaactatccaaac 45710073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 463
Target Start/End: Complemental strand, 50977491 - 50977441
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    ||||||||||||| |||||||||| |||||||| |||||||||||| ||||    
T  50977491 taatttagtcattacacattcaaaatcaatttttattcaaactatccaaac 50977441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 1199804 - 1199851
Alignment:
Q  416 tttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    |||||||||| ||| |||||| ||||||||||||||||||||| ||||    
T  1199804 tttagtcattacacgttcaaaatcaattttgattcaaactatccaaac 1199851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 463
Target Start/End: Complemental strand, 35569351 - 35569304
Alignment:
Q  416 tttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    ||||||||||  ||||||||| ||||||||||||||||||||| ||||    
T  35569351 tttagtcattatacattcaaaatcaattttgattcaaactatccaaac 35569304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 463
Target Start/End: Complemental strand, 11051462 - 11051412
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    |||||| |||||| |||||||||| |||||||| |||||||||||| ||||    
T  11051462 taatttggtcattacacattcaaaatcaatttttattcaaactatccaaac 11051412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 463
Target Start/End: Complemental strand, 20800429 - 20800379
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    |||||||||||||  ||||||||| ||||| ||||||||||||||| ||||    
T  20800429 taatttagtcattatacattcaaaatcaatattgattcaaactatccaaac 20800379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 458
Target Start/End: Original strand, 36205164 - 36205210
Alignment:
Q  412 ttaatttagtcattgcacattcaaactcaattttgattcaaactatc 458  Q
    ||||||| ||||||  ||||||||| |||||||||||||||||||||    
T  36205164 ttaatttggtcattaaacattcaaaatcaattttgattcaaactatc 36205210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 379
Target Start/End: Original strand, 25229859 - 25229916
Alignment:
Q  322 attatttttcaataaatttgtgaaccaataaaaaaccatttataattttagataagtt 379  Q
    ||||||||  ||| |||||||||||||||||||| | |||||| |||||| |||||||    
T  25229859 attattttaaaatgaatttgtgaaccaataaaaacctatttatgattttacataagtt 25229916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 153
Target Start/End: Original strand, 45709445 - 45709501
Alignment:
Q  92 atggagaaatggtacgagagaaaaatagtgtaatgaaataggaaagaagaaaggttagaaga 153  Q
    |||||||||||||| ||||||||||| |     |||||| ||||||||||||||||||||||    
T  45709445 atggagaaatggtatgagagaaaaatgg-----tgaaattggaaagaagaaaggttagaaga 45709501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 307 - 414
Target Start/End: Complemental strand, 2430567 - 2430461
Alignment:
Q  307 ctcttataatctgaaattatttttcaataaatttgtgaaccaataaaaaaccatttataattttagataagtt-aaataattatttttgaagtaaaaatg 405  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||  |||||| ||||    
T  2430567 ctcttataatctgaaattatttttaaataaatttgtgaaccaataaaaatccatttatgattttagataagttaaaataattatttt--aagtaagaatg 2430470  T
Q  406 ggatattta 414  Q
     ||||||||    
T  2430469 agatattta 2430461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 307 - 392
Target Start/End: Complemental strand, 33954172 - 33954086
Alignment:
Q  307 ctcttataatctgaaattatttttcaataaatttgtgaaccaataaaaaaccatttataattttagataagtt-aaataattatttt 392  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||| |||||||||| ||| |||||||||||||    
T  33954172 ctcttataatctcaaattatttttaaataaatttgtgaaccaataaaaatccatttatgattttagatatgttcaaataattatttt 33954086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 463
Target Start/End: Complemental strand, 2430444 - 2430394
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    ||||||||||||| |||| ||||| ||||||||||||||||||||| ||||    
T  2430444 taatttagtcattacacactcaaaatcaattttgattcaaactatccaaac 2430394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 376
Target Start/End: Complemental strand, 28869763 - 28869709
Alignment:
Q  322 attatttttcaataaatttgtgaaccaataaaaaaccatttataattttagataa 376  Q
    ||||||||  ||||||||||||||||||||||||  ||||||| |||||||||||    
T  28869763 attattttaaaataaatttgtgaaccaataaaaattcatttatgattttagataa 28869709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 463
Target Start/End: Original strand, 41834856 - 41834906
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    |||||| ||||||||||||||||| |||||||| |||||||||||| ||||    
T  41834856 taatttggtcattgcacattcaaaatcaattttcattcaaactatccaaac 41834906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 413 - 458
Target Start/End: Complemental strand, 33954049 - 33954004
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatc 458  Q
    ||||||||||||| |||||||||| | |||||||||||||||||||    
T  33954049 taatttagtcattacacattcaaaattaattttgattcaaactatc 33954004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 22482156 - 22482203
Alignment:
Q  416 tttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    ||||||||||  ||||||||| ||||||||||||||||||||| ||||    
T  22482156 tttagtcattatacattcaaaatcaattttgattcaaactatccaaac 22482203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 463
Target Start/End: Complemental strand, 3060370 - 3060320
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    |||||| |||| | |||||||||| ||||||||||||||||||||| ||||    
T  3060370 taatttggtcaatacacattcaaaatcaattttgattcaaactatccaaac 3060320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 457
Target Start/End: Original strand, 32030683 - 32030724
Alignment:
Q  416 tttagtcattgcacattcaaactcaattttgattcaaactat 457  Q
    |||||||||| ||| |||||| ||||||||||||||||||||    
T  32030683 tttagtcattacaccttcaaaatcaattttgattcaaactat 32030724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 307 - 392
Target Start/End: Complemental strand, 30811805 - 30811719
Alignment:
Q  307 ctcttataatctgaaattatttttcaataaatttgtgaaccaataaaaaaccatttataattttagataagtt-aaataattatttt 392  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||    
T  30811805 ctcttataatctgaaattatttttaaataaatttgtgaaccaataaaaatccatttataattttagataagttcaaataaatatttt 30811719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 308 - 392
Target Start/End: Original strand, 35425162 - 35425247
Alignment:
Q  308 tcttataatctgaaattatttttcaataaatttgtgaaccaataaaaaaccatttataattttagataagtt-aaataattatttt 392  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||    
T  35425162 tcttataatctgaaattatttttaaataaatttgtgaaccaataaaaatccatttataattttagataagttcaaataaatatttt 35425247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 307 - 392
Target Start/End: Complemental strand, 8425003 - 8424917
Alignment:
Q  307 ctcttataatctgaaattatttttcaataaatttgtgaaccaataaaaaaccatttataattttagataagtt-aaataattatttt 392  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||| | |||||||||||||| |||||||||||||    
T  8425003 ctcttataatctgaaattatttttaaataaatttgtgaaccaataaaaatccatttttgattttagataagttcaaataattatttt 8424917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 392
Target Start/End: Complemental strand, 44939673 - 44939602
Alignment:
Q  322 attatttttcaataaatttgtgaaccaataaaaaaccatttataattttagataag-ttaaataattatttt 392  Q
    ||||||||  ||||||||| ||||||||| |||| |||||||| |||||||||||| |||||||||||||||    
T  44939673 attattttgaaataaatttctgaaccaatcaaaatccatttatgattttagataagtttaaataattatttt 44939602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 413 - 463
Target Start/End: Original strand, 35425284 - 35425334
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||| ||||    
T  35425284 taatttagtcattacacattcaaaatcaattttgattcaaactatccaaac 35425334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 317 - 379
Target Start/End: Original strand, 42318161 - 42318223
Alignment:
Q  317 ctgaaattatttttcaataaatttgtgaaccaataaaaaaccatttataattttagataagtt 379  Q
    |||| ||||||||  ||||||||| |||||||||||||| |||||||| ||||||||||||||    
T  42318161 ctgatattattttaaaataaatttttgaaccaataaaaatccatttatgattttagataagtt 42318223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 20813099 - 20813146
Alignment:
Q  416 tttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    |||||||||| |||||||||| ||||||||||||||||||||| ||||    
T  20813099 tttagtcattacacattcaaaatcaattttgattcaaactatccaaac 20813146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 463
Target Start/End: Complemental strand, 30811682 - 30811632
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    ||||||| ||||| |||||||||| ||||||||||||||||||||| ||||    
T  30811682 taatttaatcattacacattcaaaatcaattttgattcaaactatccaaac 30811632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 376
Target Start/End: Complemental strand, 15511655 - 15511586
Alignment:
Q  307 ctcttataatctgaaattatttttcaataaatttgtgaaccaataaaaaaccatttataattttagataa 376  Q
    |||| |||| |||| ||| ||||  ||||||||||||||||||||||||  ||||||| |||||||||||    
T  15511655 ctctcataaactgacattgttttaaaataaatttgtgaaccaataaaaattcatttatgattttagataa 15511586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 457
Target Start/End: Complemental strand, 8424880 - 8424836
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactat 457  Q
    ||||||||||||| |||| ||||| ||||||||||||||||||||    
T  8424880 taatttagtcattacacactcaaaatcaattttgattcaaactat 8424836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 379
Target Start/End: Complemental strand, 38125705 - 38125649
Alignment:
Q  323 ttatttttcaataaatttgtgaaccaataaaaaaccatttataattttagataagtt 379  Q
    |||||||  |||||| || |||||||||||||| |||||||| ||||||||||||||    
T  38125705 ttattttaaaataaaattttgaaccaataaaaatccatttatgattttagataagtt 38125649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 23496277 - 23496324
Alignment:
Q  416 tttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    ||||||||||  ||||||||| ||||||||||||||||||||| ||||    
T  23496277 tttagtcattatacattcaaaatcaattttgattcaaactatccaaac 23496324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 378
Target Start/End: Original strand, 10334006 - 10334048
Alignment:
Q  336 aatttgtgaaccaataaaaaaccatttataattttagataagt 378  Q
    |||||||||||||||| ||| |||||||| |||||||||||||    
T  10334006 aatttgtgaaccaatacaaatccatttatgattttagataagt 10334048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 463
Target Start/End: Complemental strand, 10853418 - 10853368
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    |||||| |||| | |||||||||| ||||||||||||||||||||| ||||    
T  10853418 taatttggtcaatacacattcaaaatcaattttgattcaaactatccaaac 10853368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 421 - 463
Target Start/End: Complemental strand, 16246237 - 16246195
Alignment:
Q  421 tcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    ||||| |||||||||| ||||||||||||||||||||| ||||    
T  16246237 tcattacacattcaaaatcaattttgattcaaactatccaaac 16246195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 463
Target Start/End: Original strand, 42318280 - 42318330
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    |||||| ||||||  ||||||||| ||||||||||||||||||||| ||||    
T  42318280 taattttgtcattttacattcaaaatcaattttgattcaaactatccaaac 42318330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 463
Target Start/End: Complemental strand, 48189592 - 48189542
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    |||||||||||||  ||||||||| |||||||| |||||||||||| ||||    
T  48189592 taatttagtcattatacattcaaaatcaattttaattcaaactatccaaac 48189542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 463
Target Start/End: Original strand, 53179799 - 53179849
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    |||||| ||||||| ||||||||| |||||||||||| |||||||| ||||    
T  53179799 taatttggtcattgtacattcaaaatcaattttgatttaaactatccaaac 53179849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 307 - 392
Target Start/End: Complemental strand, 29396 - 29310
Alignment:
Q  307 ctcttataatctgaaattatttttcaataaatttgtgaaccaataaaaaaccatttataattttagataagtt-aaataattatttt 392  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||| || |||||||||||||| |||||||||||||    
T  29396 ctcttataatctgaaattatttttaaataaatttgtgaaccaataaaaatccattaatgattttagataagttcaaataattatttt 29310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 413 - 463
Target Start/End: Complemental strand, 29273 - 29223
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||| ||||    
T  29273 taatttagtcattacacattcaaaatcaattttgattcaaactatccaaac 29223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 307 - 392
Target Start/End: Original strand, 14820999 - 14821085
Alignment:
Q  307 ctcttataatctgaaattatttttcaataaatttgtgaaccaataaaaaaccatttataattttagataag-ttaaataattatttt 392  Q
    |||||||||| ||||||||||||| ||||||||||||||||||| |||| |||||||| |||||||||||| |||||||||||||||    
T  14820999 ctcttataatatgaaattatttttaaataaatttgtgaaccaatcaaaatccatttatgattttagataagtttaaataattatttt 14821085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 416 - 463
Target Start/End: Complemental strand, 5916387 - 5916340
Alignment:
Q  416 tttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    |||||||||| |||||||||| ||||||||||||||||||||| ||||    
T  5916387 tttagtcattacacattcaaaatcaattttgattcaaactatccaaac 5916340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 36312239 - 36312286
Alignment:
Q  416 tttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    |||||||||| |||||||||| ||||||||||||||||||||| ||||    
T  36312239 tttagtcattacacattcaaaatcaattttgattcaaactatccaaac 36312286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 463
Target Start/End: Complemental strand, 7472822 - 7472772
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    |||||| ||||||  ||||||||| ||||||||||||||||||||| ||||    
T  7472822 taatttggtcattttacattcaaaatcaattttgattcaaactatccaaac 7472772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 463
Target Start/End: Original strand, 8170272 - 8170322
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    |||||||||||||  ||||||||| |||||||| |||||||||||| ||||    
T  8170272 taatttagtcattatacattcaaaatcaattttaattcaaactatccaaac 8170322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 463
Target Start/End: Original strand, 14821122 - 14821172
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    |||||||||||||  ||||||||| |||||||||||||||| |||| ||||    
T  14821122 taatttagtcattagacattcaaaatcaattttgattcaaaatatccaaac 14821172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 307 - 392
Target Start/End: Complemental strand, 36121807 - 36121721
Alignment:
Q  307 ctcttataatctgaaattatttttcaataaatttgtgaaccaataaaaaaccatttataattttagataag-ttaaataattatttt 392  Q
    |||||||||| ||||||||||||| ||||||||||||||| ||| |||| |||||||| |||||||||||| |||||||||||||||    
T  36121807 ctcttataatatgaaattatttttaaataaatttgtgaacaaatcaaaatccatttatgattttagataagtttaaataattatttt 36121721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 463
Target Start/End: Complemental strand, 6399259 - 6399209
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    |||||| ||||||||||||||||| |||||||||||| ||| |||| ||||    
T  6399259 taatttggtcattgcacattcaaaatcaattttgattaaaattatccaaac 6399209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 454
Target Start/End: Original strand, 16915018 - 16915060
Alignment:
Q  412 ttaatttagtcattgcacattcaaactcaattttgattcaaac 454  Q
    |||||||||||||| |||||||||| ||||||||||| |||||    
T  16915018 ttaatttagtcattacacattcaaaatcaattttgatacaaac 16915060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 309 - 392
Target Start/End: Original strand, 14072318 - 14072401
Alignment:
Q  309 cttataatctgaaattatttttcaataaatttgtgaaccaataaaaaaccatttataattttagataagtt-aaataattatttt 392  Q
    |||||||||| ||||||||||| ||||||||||||||||||| ||||| ||||||| |||||||||| ||| |||||||||||||    
T  14072318 cttataatctcaaattatttttaaataaatttgtgaaccaat-aaaaatcatttatgattttagatatgttcaaataattatttt 14072401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 322 - 392
Target Start/End: Original strand, 54152872 - 54152943
Alignment:
Q  322 attatttttcaataaatttgtgaaccaataaaaaaccatttataattttagataag-ttaaataattatttt 392  Q
    ||||||||| ||||||||||||||||||| |||| |||||||| |||||||||||| |||||||||||||||    
T  54152872 attatttttaaataaatttgtgaaccaatcaaaatccatttatgattttagataagtttaaataattatttt 54152943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 307 - 392
Target Start/End: Complemental strand, 32238334 - 32238248
Alignment:
Q  307 ctcttataatctgaaattatttttcaataaatttgtgaaccaataaaaaaccatttataattttagataag-ttaaataattatttt 392  Q
    |||||||||| |||| |||||||| ||||||||  ||||||||| |||| |||||||| |||||||||||| |||||||||||||||    
T  32238334 ctcttataatatgaagttatttttaaataaattgttgaaccaatcaaaatccatttatgattttagataagtttaaataattatttt 32238248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 413 - 463
Target Start/End: Original strand, 14072438 - 14072488
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||| ||||    
T  14072438 taatttagtcattacacattcaaaatcaattttgattcaaactatccaaac 14072488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 317 - 379
Target Start/End: Original strand, 30841948 - 30842010
Alignment:
Q  317 ctgaaattatttttcaataaatttgtgaaccaataaaaaaccatttataattttagataagtt 379  Q
    |||| ||||||||  ||||||||| |||||||||||||| |||||||| ||||||||||||||    
T  30841948 ctgatattattttaaaataaatttttgaaccaataaaaatccatttatgattttagataagtt 30842010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 16566243 - 16566290
Alignment:
Q  416 tttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    |||||||||| |||||||||| ||||||||||||||||||||| ||||    
T  16566243 tttagtcattacacattcaaaatcaattttgattcaaactatccaaac 16566290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 457
Target Start/End: Original strand, 54152980 - 54153024
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactat 457  Q
    |||||||||||||  ||||||||| ||||||||||||||||||||    
T  54152980 taatttagtcattagacattcaaaatcaattttgattcaaactat 54153024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 379
Target Start/End: Original strand, 15603191 - 15603238
Alignment:
Q  332 aataaatttgtgaaccaataaaaaaccatttataattttagataagtt 379  Q
    ||||||||| ||||||||||||||  ||||||| ||||||||||||||    
T  15603191 aataaatttatgaaccaataaaaatgcatttatgattttagataagtt 15603238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 379
Target Start/End: Complemental strand, 48407952 - 48407905
Alignment:
Q  332 aataaatttgtgaaccaataaaaaaccatttataattttagataagtt 379  Q
    ||||||||| |||||||||||||| ||| |||| ||||||||||||||    
T  48407952 aataaatttttgaaccaataaaaatccacttatgattttagataagtt 48407905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 463
Target Start/End: Complemental strand, 2175298 - 2175248
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    |||||||||||||| || |||||| |||||||| |||||||||||| ||||    
T  2175298 taatttagtcattgtacgttcaaaatcaattttaattcaaactatccaaac 2175248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 463
Target Start/End: Complemental strand, 9889485 - 9889435
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    |||||||||||||  ||||||||| |||||||| |||||||||||| ||||    
T  9889485 taatttagtcattatacattcaaaatcaattttaattcaaactatccaaac 9889435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 463
Target Start/End: Complemental strand, 19592382 - 19592332
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    |||||| ||||||| ||||||||| |||||||| |||||||||||| ||||    
T  19592382 taatttggtcattgtacattcaaaatcaattttcattcaaactatccaaac 19592332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 463
Target Start/End: Complemental strand, 32238209 - 32238159
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    |||||||||||||  ||||||||| ||| ||||||||||||||||| ||||    
T  32238209 taatttagtcattagacattcaaaatcagttttgattcaaactatccaaac 32238159  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 458
Target Start/End: Original strand, 30842067 - 30842112
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatc 458  Q
    |||||| ||||||  ||||||||| |||||||||||||||||||||    
T  30842067 taattttgtcattttacattcaaaatcaattttgattcaaactatc 30842112  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 458
Target Start/End: Complemental strand, 48407848 - 48407803
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatc 458  Q
    |||||| ||||||  ||||||||| |||||||||||||||||||||    
T  48407848 taattttgtcattttacattcaaaatcaattttgattcaaactatc 48407803  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 389
Target Start/End: Complemental strand, 31520634 - 31520566
Alignment:
Q  322 attatttttcaataaatttgtgaaccaataaaaaaccatttataattttagataagtt-aaataattat 389  Q
    ||||||||  ||||| |||||||| |||||||||  || |||| |||||||||||||| ||||||||||    
T  31520634 attattttaaaataagtttgtgaagcaataaaaattcaattatgattttagataagttcaaataattat 31520566  T

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Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 322 - 392
Target Start/End: Complemental strand, 6208321 - 6208250
Alignment:
Q  322 attatttttcaataaatttgtgaaccaataaaaaaccatttataattttagataag-ttaaataattatttt 392  Q
    ||||||||| ||||||||||||||||||| ||||  ||||||| |||||||||||| |||||||||||||||    
T  6208321 attatttttaaataaatttgtgaaccaatcaaaattcatttatgattttagataagtttaaataattatttt 6208250  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 16548092 - 16548139
Alignment:
Q  416 tttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    |||||||||| |||||||||| ||||||||||||||||||||| ||||    
T  16548092 tttagtcattacacattcaaaatcaattttgattcaaactatccaaac 16548139  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 419 - 463
Target Start/End: Complemental strand, 17830143 - 17830099
Alignment:
Q  419 agtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    ||||||| |||||||||| ||||||||||||||||||||| ||||    
T  17830143 agtcattacacattcaaaatcaattttgattcaaactatccaaac 17830099  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 463
Target Start/End: Complemental strand, 6208213 - 6208163
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    |||||||||||||  ||||||||| | ||||||||||||||||||| ||||    
T  6208213 taatttagtcattagacattcaaaattaattttgattcaaactatctaaac 6208163  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 47301799 - 47301743
Alignment:
Q  322 attatttttcaataaatttgtgaaccaataaaaaaccatttataattttagataagt 378  Q
    ||||||||  ||||||||| |||||||||||||| |||||||| |||||||||||||    
T  47301799 attattttaaaataaatttttgaaccaataaaaatccatttatgattttagataagt 47301743  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 412 - 463
Target Start/End: Complemental strand, 43738078 - 43738027
Alignment:
Q  412 ttaatttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    ||||||| |||||| |||||||||| ||||||||||||||||||||| ||||    
T  43738078 ttaatttggtcatttcacattcaaaatcaattttgattcaaactatccaaac 43738027  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 463
Target Start/End: Complemental strand, 47301695 - 47301645
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    |||||||||||||  ||||||||| ||||||||||||||||||||| ||||    
T  47301695 taatttagtcattttacattcaaaatcaattttgattcaaactatccaaac 47301645  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 376
Target Start/End: Complemental strand, 34366248 - 34366179
Alignment:
Q  307 ctcttataatctgaaattatttttcaataaatttgtgaaccaataaaaaaccatttataattttagataa 376  Q
    |||| |||| |||| ||| ||||  ||||||||||||||||||||||||  ||||||| |||||||||||    
T  34366248 ctctcataaactgatattgttttaaaataaatttgtgaaccaataaaaattcatttatgattttagataa 34366179  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 38230042 - 38230089
Alignment:
Q  416 tttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    |||||||||| |||||| ||| ||||||||||||||||||||| ||||    
T  38230042 tttagtcattacacatttaaaatcaattttgattcaaactatccaaac 38230089  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 463
Target Start/End: Original strand, 48134558 - 48134601
Alignment:
Q  420 gtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    |||||| |||||||||| ||||||||||||||||||||| ||||    
T  48134558 gtcattacacattcaaaatcaattttgattcaaactatccaaac 48134601  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 463
Target Start/End: Original strand, 9456076 - 9456126
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    |||||| ||||||  ||||||||| ||||||||||||||||||||| ||||    
T  9456076 taatttggtcattttacattcaaaatcaattttgattcaaactatccaaac 9456126  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 416 - 458
Target Start/End: Complemental strand, 10372093 - 10372051
Alignment:
Q  416 tttagtcattgcacattcaaactcaattttgattcaaactatc 458  Q
    |||||||||| | |||||||| |||||||||||||||||||||    
T  10372093 tttagtcattacgcattcaaaatcaattttgattcaaactatc 10372051  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 463
Target Start/End: Original strand, 47021890 - 47021940
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    |||||| ||||||||||||||||| |||||||| ||||||| |||| ||||    
T  47021890 taatttggtcattgcacattcaaaatcaattttcattcaaattatccaaac 47021940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 463
Target Start/End: Complemental strand, 47217679 - 47217629
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    |||||||||||||| || |||||| |||||||| |||||||||||| ||||    
T  47217679 taatttagtcattgtacgttcaaaatcaattttaattcaaactatccaaac 47217629  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 453
Target Start/End: Original strand, 3375461 - 3375501
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaa 453  Q
    |||||| ||||||||||||||||| ||||||||||| ||||    
T  3375461 taatttggtcattgcacattcaaaatcaattttgatccaaa 3375501  T

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Target: scaffold0369 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 463
Target Start/End: Original strand, 8399 - 8449
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    |||||| ||||||| ||||||||| ||||||||||||||||||||| ||||    
T  8399 taatttggtcattgtacattcaaaatcaattttgattcaaactatccaaac 8449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 463
Target Start/End: Original strand, 9061 - 9111
Alignment:
Q  413 taatttagtcattgcacattcaaactcaattttgattcaaactatcgaaac 463  Q
    |||||||||||||  ||||||||| |||||||| |||||||||||| ||||    
T  9061 taatttagtcattatacattcaaaatcaattttaattcaaactatccaaac 9111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 453
Target Start/End: Complemental strand, 5979 - 5942
Alignment:
Q  416 tttagtcattgcacattcaaactcaattttgattcaaa 453  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  5979 tttagtcattacacattcaaaatcaattttgattcaaa 5942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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