View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5218_high_48 (Length: 231)
Name: NF5218_high_48
Description: NF5218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5218_high_48 |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 9e-91; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 1694914 - 1695121
Alignment:
| Q |
16 |
tcatatgtaacaagtttagagaaaatacagtataatcttcataggatctgaa------attaatggaatagactttacttaccatgatagtaagaggaga |
109 |
Q |
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| T |
1694914 |
tcatatgtaacaagtttagagaaaatacagtataatcttcatatgatctgaatataaaattaatggaatagaagttacttaccatgatcgtaagaggaga |
1695013 |
T |
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| Q |
110 |
agcatacatcaatatgttgaagatatcacaaataatcccaacaattaaagacctcttggtagtgccatgtaatgccaacattgttatcagaacaatgata |
209 |
Q |
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| T |
1695014 |
agcatacatcaatatgttgaagatatcacaaataatcccaacaattaaagacctcttggtagtgccatgtaatgccaacattgttatcagaacaatgata |
1695113 |
T |
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| Q |
210 |
gcaaaaaa |
217 |
Q |
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|||||||| |
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| T |
1695114 |
gcaaaaaa |
1695121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 73 - 206
Target Start/End: Original strand, 1684554 - 1684687
Alignment:
| Q |
73 |
tggaatagactttacttaccatgatagtaagaggagaagcatacatcaatatgttgaagatatcacaaataatcccaacaattaaagacctcttggtagt |
172 |
Q |
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| T |
1684554 |
tggaatagaagttacttaccatgattgtaagaggagaaatatacatcaatatgttgaagacatcacaaacaataccaacaattaaagacctgccggtagt |
1684653 |
T |
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| Q |
173 |
gccatgtaatgccaacattgttatcagaacaatg |
206 |
Q |
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| T |
1684654 |
gccatgaaataccaacattgttatcagaacaatg |
1684687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 214
Target Start/End: Original strand, 1700096 - 1700224
Alignment:
| Q |
86 |
acttaccatgatagtaagaggagaagcatacatcaatatgttgaagatatcacaaataatcccaacaattaaagacctcttggtagtgccatgtaatgcc |
185 |
Q |
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| T |
1700096 |
acttaccatgattgtaagaggagatgcatacatcatgacattgaagacatcacatagaacaccaacaattaacgatctttttttagtgccatgaagtgcc |
1700195 |
T |
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| Q |
186 |
aacattgttatcagaacaatgatagcaaa |
214 |
Q |
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| T |
1700196 |
aacattgttattagaacaatgacagcaaa |
1700224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 1971015 - 1971087
Alignment:
| Q |
71 |
aatggaatagactttacttaccatgatagtaagaggagaagcatacatcaatatgttgaagatatcacaaata |
143 |
Q |
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| T |
1971015 |
aatggaatagaagttacttaccacgatggtaagaggagagacatacatcaatatggggaagatatcacaaata |
1971087 |
T |
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